BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0042.p (237 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAD31223.1| hypothetical protein [Streptococcus salivarius] 308 9e-83 ref|NP_780950.1| ABC transporter ATP-binding protein [Clostridiu... 259 2e-68 ref|NP_622501.1| ABC-type multidrug transport system, ATPase com... 252 5e-66 ref|NP_561221.1| probable ABC transporter [Clostridium perfringe... 247 2e-64 ref|NP_346909.1| ABC transporter ATP-binding protein [Clostridiu... 240 1e-62 >emb|CAD31223.1| hypothetical protein [Streptococcus salivarius] Length = 236 Score = 308 bits (788), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 152/237 (64%), Positives = 185/237 (78%), Gaps = 1/237 (0%) Query: 1 MLTITHFTKSYKGGKKAVNDLNLVVERGDIYGFIGHNGAGKTTTIRAVVGVLDFEEGDIE 60 ML I +F+KSY G KK V++L++ V+ GDIYGFIG NGAGKTTTI+AVVG+ DFE+G I Sbjct: 1 MLEIKNFSKSY-GDKKVVDNLSISVQPGDIYGFIGANGAGKTTTIKAVVGIHDFEDGSII 59 Query: 61 IDGVSIKKDPVACKAKTAYIPDNPDLYDHLTGIQYLNFIGDLFRVSKADRERLIKKYSDA 120 I+G SIK++PV CK AYIPDNPDLY+H+TG+QY+NFI DLF + R I+ Y D Sbjct: 60 INGHSIKEEPVICKKMMAYIPDNPDLYEHMTGLQYINFIADLFEIPTKIRRERIQNYGDL 119 Query: 121 FQITANLGDMISSYSHGMKQKLAIISALIHKPKLLVLDEPFVGLDPKAAHMLKTIMVELC 180 F +T +L +ISSYSHGMKQ+ AIISAL+H PKLL+LDEPFVGLDPKA +LK IM E Sbjct: 120 FDMTEHLSGIISSYSHGMKQRTAIISALVHSPKLLILDEPFVGLDPKATFLLKKIMHECV 179 Query: 181 SSGSAIFFSTHVLDVAEKLCNKIAIIKGGQLIAHGRTEEVKGKNSLEDVFLELIDND 237 S G AIFFSTHVLDVAEKLCNKIAIIK G+L+A G T ++KG SLE F+E+ N+ Sbjct: 180 SDGGAIFFSTHVLDVAEKLCNKIAIIKNGKLVASGNTGDIKGNESLEAFFMEVQGNE 236 >ref|NP_780950.1| ABC transporter ATP-binding protein [Clostridium tetani E88] gb|AAO34887.1| ABC transporter ATP-binding protein [Clostridium tetani E88] Length = 241 Score = 259 bits (663), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 120/241 (49%), Positives = 178/241 (73%), Gaps = 4/241 (1%) Query: 1 MLTITHFTKSYKGGKKAVNDLNLVVERGDIYGFIGHNGAGKTTTIRAVVGVLDFEEGDIE 60 M+ + + +KSY G KAV++++L +E+G+I+GF+G NGAGKTTTI+ + G+L+ +EG+I+ Sbjct: 1 MIHLENVSKSYNGTTKAVDNISLSIEKGEIFGFLGPNGAGKTTTIKMITGILNADEGEIK 60 Query: 61 IDGVSIKKDPVACKAKTAYIPDNPDLYDHLTGIQYLNFIGDLFRVSKADRERLIKKYSDA 120 I+GV IKKDP+ K + ++PDNPD++ L GI+YLNFI D+++VS+ RE IK+ S Sbjct: 61 INGVDIKKDPLRAKMQFGFVPDNPDMFLRLKGIEYLNFIADIYKVSQEKREEKIKELSLR 120 Query: 121 FQITANLGDMISSYSHGMKQKLAIISALIHKPKLLVLDEPFVGLDPKAAHMLKTIMVELC 180 F + L D I SYSHGM+QK+ I+ LIH P++ +LDEP GLDPK+A++LK +M E Sbjct: 121 FNMENALDDRIQSYSHGMRQKIIIMGVLIHDPEVWILDEPMTGLDPKSAYILKEMMREHV 180 Query: 181 SSGSAIFFSTHVLDVAEKLCNKIAIIKGGQLIAHGRTEEVKGK----NSLEDVFLELIDN 236 SG +FFSTHVL+VAEKLC+++AII G+++ G+ E+K K SLE +FLE+ +N Sbjct: 181 KSGKTVFFSTHVLEVAEKLCDRLAIINNGKVLLCGKLNEIKEKFKEDESLEKIFLEVTEN 240 Query: 237 D 237 + Sbjct: 241 E 241 >ref|NP_622501.1| ABC-type multidrug transport system, ATPase component [Thermoanaerobacter tengcongensis] gb|AAM24105.1| ABC-type multidrug transport system, ATPase component [Thermoanaerobacter tengcongensis] Length = 245 Score = 252 bits (643), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 116/239 (48%), Positives = 176/239 (73%), Gaps = 4/239 (1%) Query: 1 MLTITHFTKSYKGGK-KAVNDLNLVVERGDIYGFIGHNGAGKTTTIRAVVGVLDFEEGDI 59 ++ + + +KSY GK KAV+ LNLVV G+I+GF+G NGAGKTTTI+ +VG+L +EG+I Sbjct: 6 LIELKNVSKSYNNGKIKAVDGLNLVVNPGEIFGFLGPNGAGKTTTIKMIVGILKPDEGEI 65 Query: 60 EIDGVSIKKDPVACKAKTAYIPDNPDLYDHLTGIQYLNFIGDLFRVSKADRERLIKKYSD 119 +DG+ I+K+P+ K K Y+PD P +YD LTG++YLNFI D++ +S+ +R ++ + + Sbjct: 66 LVDGIDIQKNPIEAKKKIGYVPDEPYIYDKLTGLEYLNFIADVYGISEKERREKLEYFLE 125 Query: 120 AFQITANLGDMISSYSHGMKQKLAIISALIHKPKLLVLDEPFVGLDPKAAHMLKTIMVEL 179 F++ +GD+I SYSHGMKQKL I +AL+H P + +LDEP GLDP+++ +LK +M Sbjct: 126 IFELKNAIGDLIQSYSHGMKQKLLITAALLHSPSVWILDEPMTGLDPRSSFLLKELMANH 185 Query: 180 CSSGSAIFFSTHVLDVAEKLCNKIAIIKGGQLIAHGRTEEVKGKN---SLEDVFLELID 235 +G +FFSTH+L+VAE+LC++IAII G+++A G EE+K ++ SLE +FLEL + Sbjct: 186 TKAGFTVFFSTHILEVAERLCDRIAIINKGKIVACGTMEEIKKQHEWESLEKIFLELTE 244 >ref|NP_561221.1| probable ABC transporter [Clostridium perfringens] dbj|BAB80011.1| probable ABC transporter [Clostridium perfringens str. 13] Length = 241 Score = 247 bits (630), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 117/241 (48%), Positives = 170/241 (70%), Gaps = 4/241 (1%) Query: 1 MLTITHFTKSYKGGKKAVNDLNLVVERGDIYGFIGHNGAGKTTTIRAVVGVLDFEEGDIE 60 M+ + K Y G KAV++LNL ++ G+I+G +G NGAGKTTTI + G+ + G+I+ Sbjct: 1 MIILKGVDKEYTQGVKAVDNLNLEIKDGEIFGILGPNGAGKTTTISMITGITEPTMGEIK 60 Query: 61 IDGVSIKKDPVACKAKTAYIPDNPDLYDHLTGIQYLNFIGDLFRVSKADRERLIKKYSDA 120 I+ + I K+PV K + Y+PD+PD++ GI+YLNF+GD++ VS++DRE IK + Sbjct: 61 INNIDISKNPVEAKMQFGYVPDSPDMFLRYKGIEYLNFMGDVYNVSESDREERIKDLAKR 120 Query: 121 FQITANLGDMISSYSHGMKQKLAIISALIHKPKLLVLDEPFVGLDPKAAHMLKTIMVELC 180 F++T LGD I SYSHGM+QK+ I+ LIHKP + +LDEP GLDPK++++LK +M E Sbjct: 121 FEMTNALGDKIQSYSHGMRQKIIIMGVLIHKPSIWILDEPLTGLDPKSSYILKEMMREHA 180 Query: 181 SSGSAIFFSTHVLDVAEKLCNKIAIIKGGQLIAHGRTEEV----KGKNSLEDVFLELIDN 236 S G+ + FSTHVL+VAEKLC+++ IIK G+LI G EE+ KG SLE +FLE+ +N Sbjct: 181 SEGNTVLFSTHVLEVAEKLCDRVGIIKKGKLIFVGTLEELKEEFKGDESLEKMFLEITEN 240 Query: 237 D 237 + Sbjct: 241 E 241 >ref|NP_346909.1| ABC transporter ATP-binding protein [Clostridium acetobutylicum] pir||F96932 ABC transporter ATP-binding protein CAC0268 [imported] - Clostridium acetobutylicum gb|AAK78249.1| ABC transporter ATP-binding protein [Clostridium acetobutylicum] Length = 258 Score = 240 bits (613), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 109/241 (45%), Positives = 171/241 (70%), Gaps = 5/241 (2%) Query: 1 MLTITHFTKSYKGGKKAVNDLNLVVERGDIYGFIGHNGAGKTTTIRAVVGVLDFEEGDIE 60 ++ + + KSY G KAV++LN + G+I+GF+G NGAGK+TTI+ + G++ + G+I+ Sbjct: 15 VIELLNVNKSYNGKNKAVDNLNFTINSGEIFGFLGPNGAGKSTTIKMITGIIKADSGEIK 74 Query: 61 IDGVSIKKDPVACKAKTAYIPDNPDLYDHLTGIQYLNFIGDLFRVSKADRERLIKKYSDA 120 +DG++IK++P+ K K Y+PD+PD++ L GI+YLNF+ D++ V+ +DR+ I+ S Sbjct: 75 VDGLNIKENPIEAKRKIGYVPDSPDMFLRLKGIEYLNFMADIYDVTTSDRKERIESLSKY 134 Query: 121 FQITANLGDMISSYSHGMKQKLAIISALIHKPKLLVLDEPFVGLDPKAAHMLKTIMVELC 180 F + + L D I SYSHGM+QK+ ++ ALIH P + +LDEP GLDPKA++ LK +M + Sbjct: 135 FDMESALDDKIQSYSHGMRQKIVVMGALIHDPDVWILDEPMTGLDPKASYNLKEMMRKHA 194 Query: 181 SSGSAIFFSTHVLDVAEKLCNKIAIIKGGQLIAHGRTEEVKGK-----NSLEDVFLELID 235 SG +FFSTHVL+VAEKLC++I I+ G+++ G E+K K +SLE +FLEL++ Sbjct: 195 DSGKTVFFSTHVLEVAEKLCDRIGIVSKGKIVFCGTMNEMKQKLQEEGSSLERMFLELVE 254 Query: 236 N 236 + Sbjct: 255 D 255 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.139 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 348,014,265 Number of extensions: 13984308 Number of successful extensions: 97895 Number of sequences better than 1.0e-05: 15867 Number of HSP's gapped: 86338 Number of HSP's successfully gapped: 16666 Length of query: 237 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 115 Effective length of database: 425,995,500 Effective search space: 48989482500 Effective search space used: 48989482500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)