BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0031.p (133 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_464435.1| similar to transcription regulator, GntR family... 140 1e-32 ref|NP_470249.1| similar to transcription regulator, GntR family... 140 1e-32 ref|NP_347237.1| Transcriptional regulator, GntR family [Clostri... 122 2e-27 ref|NP_814093.1| transcriptional regulator, GntR family [Enteroc... 97 1e-19 ref|NP_343009.1| Conserved hypothetical protein [Sulfolobus solf... 80 2e-14 >ref|NP_464435.1| similar to transcription regulator, GntR family [Listeria monocytogenes EGD-e] pir||AE1188 transcription regulator, GntR family homolog lmo0909 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98987.1| lmo0909 [Listeria monocytogenes] Length = 130 Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 61/121 (50%), Positives = 89/121 (73%) Query: 1 LFIELDLQSETPIYAQLIDQLIEGIASGELKPGDPLPSVRRLAEDLGINLHTVNKSYNLL 60 + + +DLQS+ PIY Q+ +Q+IEG+A EL PGD LPSVR L D+GIN HTVNK+Y +L Sbjct: 1 MLLAIDLQSDEPIYTQICNQIIEGMAKRELLPGDKLPSVRSLGADIGINFHTVNKAYQIL 60 Query: 61 KQEGFLQVHRKKGVIVQPDGMPGVTEAFEEKLRQQLRSLXXXXXVRGMSEEAFTQKSRSV 120 KQEGF+Q+HR+KGV++ PDG+ E F KL+ +L+ L VRG++EE + + S+++ Sbjct: 61 KQEGFIQIHRQKGVVIHPDGVAKADELFFTKLQTKLKPLIAESVVRGVTEEKWLEVSKAI 120 Query: 121 Y 121 + Sbjct: 121 F 121 >ref|NP_470249.1| similar to transcription regulator, GntR family [Listeria innocua] pir||AE1546 transcription regulator, GntR family homolog lin0909 [imported] - Listeria innocua (strain Clip11262) emb|CAC96141.1| lin0909 [Listeria innocua] Length = 130 Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 65/131 (49%), Positives = 93/131 (70%), Gaps = 1/131 (0%) Query: 1 LFIELDLQSETPIYAQLIDQLIEGIASGELKPGDPLPSVRRLAEDLGINLHTVNKSYNLL 60 + + +DLQS+ PIY Q+ +Q+IEG+A EL PGD LPSVR L D+GIN HTVNK+Y +L Sbjct: 1 MLLAIDLQSDEPIYTQICNQIIEGMAKRELLPGDKLPSVRSLGADIGINFHTVNKAYQIL 60 Query: 61 KQEGFLQVHRKKGVIVQPDGMPGVTEAFEEKLRQQLRSLXXXXXVRGMSEEAFTQKSRSV 120 KQEGF+Q+HR+KGV++ PDG+ + F KL+ +LR L VR +SEE + + S+++ Sbjct: 61 KQEGFIQIHRQKGVVIHPDGVAKADQLFFTKLQTKLRPLIAESIVRSVSEEEWLEISKAI 120 Query: 121 YRNAITNRGGE 131 + + I RG E Sbjct: 121 F-DEIKGRGVE 130 >ref|NP_347237.1| Transcriptional regulator, GntR family [Clostridium acetobutylicum] pir||F96973 transcription regulator, GntR family [imported] - Clostridium acetobutylicum gb|AAK78577.1| Transcriptional regulator, GntR family [Clostridium acetobutylicum] Length = 125 Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 58/121 (47%), Positives = 83/121 (68%), Gaps = 1/121 (0%) Query: 1 LFIELDLQSETPIYAQLIDQLIEGIASGELKPGDPLPSVRRLAEDLGINLHTVNKSYNLL 60 + I +D +SETPIY QL +QL+ G+A GEL+ G+ LPSVR++AED+GINLHTVNK YN+L Sbjct: 1 MLIRIDFESETPIYEQLKNQLVIGMAKGELRRGESLPSVRQMAEDIGINLHTVNKVYNIL 60 Query: 61 KQEGFLQVHRKKGVIVQPDGMPGVTEAFEEKLRQQLRSLXXXXXVRGMSEEAFTQKSRSV 120 KQEG+L + R+ G ++ + MP TE F EKL ++L + R +S++ F + Sbjct: 61 KQEGYLNIDRRIGAVIN-ENMPERTEEFSEKLIKELEYVIADCKCRDISKKEFLDICSKI 119 Query: 121 Y 121 Y Sbjct: 120 Y 120 >ref|NP_814093.1| transcriptional regulator, GntR family [Enterococcus faecalis V583] gb|AAO80164.1| transcriptional regulator, GntR family [Enterococcus faecalis V583] Length = 129 Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 49/123 (39%), Positives = 78/123 (63%), Gaps = 2/123 (1%) Query: 1 LFIELDLQSETPIYAQLIDQLIEGIASGELKPGDPLPSVRRLAEDLGINLHTVNKSYNLL 60 + +E+D QSE PIY QLIDQ+I GIA GEL P + LPS+R+LA+++G+N+ TV+K+YN L Sbjct: 1 MLLEIDEQSEQPIYQQLIDQIIVGIAKGELVPNESLPSIRQLADEIGVNMMTVSKAYNKL 60 Query: 61 KQEGFLQVHRKKGVIVQPDGMPGVTEAFEEKLRQQLRSLXXXXXVRGMSEEAFTQKSRSV 120 KQ G++ R+ G + +P T ++++L ++L L + SE + + Sbjct: 61 KQSGYIVTDRRNGTKIAAK-LPA-TAVWQQQLHERLELLLAESFLHQQSEAEIQALIQKI 118 Query: 121 YRN 123 Y+N Sbjct: 119 YQN 121 >ref|NP_343009.1| Conserved hypothetical protein [Sulfolobus solfataricus] pir||H90317 conserved hypothetical protein [imported] - Sulfolobus solfataricus gb|AAK41799.1| Conserved hypothetical protein [Sulfolobus solfataricus] Length = 117 Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 37/73 (50%), Positives = 52/73 (71%) Query: 3 IELDLQSETPIYAQLIDQLIEGIASGELKPGDPLPSVRRLAEDLGINLHTVNKSYNLLKQ 62 I +DL S+ IY Q+ +Q+IE IA G L PGDPLPSVR +A L +N+ TV K+Y L+ Sbjct: 6 IRIDLNSKKQIYEQIANQIIELIAKGVLNPGDPLPSVREMAAMLSVNMLTVEKAYKYLEG 65 Query: 63 EGFLQVHRKKGVI 75 EGF+ V++K+ V+ Sbjct: 66 EGFVTVYKKRFVV 78 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.136 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 182,320,470 Number of extensions: 6756614 Number of successful extensions: 20930 Number of sequences better than 1.0e-05: 173 Number of HSP's gapped: 20978 Number of HSP's successfully gapped: 173 Length of query: 133 Length of database: 757,237,578 Length adjustment: 95 Effective length of query: 38 Effective length of database: 499,303,173 Effective search space: 18973520574 Effective search space used: 18973520574 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 120 (50.8 bits)