BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0027.p
         (69 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_691392.1| hypothetical protein OB0471 [Oceanobacillus ihe...    75   3e-13
ref|NP_781350.1| conserved protein [Clostridium tetani E88] >gi|...    59   3e-08
ref|NP_349334.1| Hypothetical protein, CF-30 family [Clostridium...    57   1e-07

>ref|NP_691392.1| hypothetical protein OB0471 [Oceanobacillus iheyensis HTE831]
 dbj|BAC12427.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 246

 Score = 75.5 bits (184), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 42/65 (64%)

Query: 5   TFAIDPGGIRRCLFRNTYIWLNNGEQFWFFPVFVGRTSIAXXXXXXXXXXXXXIDLNQIR 64
           TFA+DPGGIRRCLFR TYIW   G  FW+FP FVGR SIA             +DL++I 
Sbjct: 182 TFAVDPGGIRRCLFRFTYIWPERGRGFWYFPTFVGRNSIAGFRWSGFRWVYFGMDLDRIE 241

Query: 65  SFTCF 69
           SF C+
Sbjct: 242 SFQCY 246


>ref|NP_781350.1| conserved protein [Clostridium tetani E88]
 gb|AAO35287.1| conserved protein [Clostridium tetani E88]
          Length = 120

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 34/67 (50%)

Query: 3   ATTFAIDPGGIRRCLFRNTYIWLNNGEQFWFFPVFVGRTSIAXXXXXXXXXXXXXIDLNQ 62
           A   A+DPG IR C FR  YIW   G  FW F  FVG  SIA             IDLN+
Sbjct: 54  AQILAVDPGSIRPCRFRFVYIWPERGRPFWMFITFVGPRSIAGWRWTGFSWSYFGIDLNR 113

Query: 63  IRSFTCF 69
           I SF CF
Sbjct: 114 IDSFVCF 120


>ref|NP_349334.1| Hypothetical protein, CF-30 family [Clostridium acetobutylicum]
 pir||G97235 hypothetical protein CAC2728 [imported] - Clostridium
           acetobutylicum
 gb|AAK80674.1| Hypothetical protein, CF-30 family [Clostridium acetobutylicum]
          Length = 210

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 34/62 (54%)

Query: 7   AIDPGGIRRCLFRNTYIWLNNGEQFWFFPVFVGRTSIAXXXXXXXXXXXXXIDLNQIRSF 66
           A+D G IR C ++ TYIWLNN   FW +  FVG  SIA             +DL QIRSF
Sbjct: 148 AVDSGAIRMCRYKYTYIWLNNRRSFWAYLTFVGPRSIAGYRWNGRRWIYFGLDLRQIRSF 207

Query: 67  TC 68
            C
Sbjct: 208 VC 209


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.335    0.146    0.508 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 82,462,632
Number of extensions: 1991390
Number of successful extensions: 4439
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4439
Number of HSP's successfully gapped: 3
Length of query: 69
Length of database: 757,237,578
Length adjustment: 40
Effective length of query: 29
Effective length of database: 648,633,618
Effective search space: 18810374922
Effective search space used: 18810374922
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 120 (50.8 bits)