BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0016.p (278 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00020541.1| hypothetical protein [Chloroflexus aurantiacus] 230 3e-59 ref|NP_691697.1| sugar ABC transporter permease [Oceanobacillus ... 207 2e-52 ref|NP_244549.1| sugar ABC transporter (permease) [Bacillus halo... 186 4e-46 ref|NP_694043.1| sugar ABC transporter permease [Oceanobacillus ... 184 1e-45 ref|NP_623884.1| Sugar permeases [Thermoanaerobacter tengcongens... 184 2e-45 >ref|ZP_00020541.1| hypothetical protein [Chloroflexus aurantiacus] Length = 288 Score = 230 bits (586), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 105/257 (40%), Positives = 169/257 (65%) Query: 22 IQVYPLVWVFISSFKATTDFSGDNPLSLPSQFTFGNYYSVWNKGNLGTYFSNSXXXXXXX 81 I++YPL W+ +SSFKA +FS + +LP F + NY W +G +G YF NS Sbjct: 32 IELYPLTWLLLSSFKAPAEFSLNPIYALPEGFYWQNYIRAWTEGRMGVYFRNSLMVTIPS 91 Query: 82 XXXXXXFSAMAAFVIEKMSFKWSQSVLFLFLCGIMIPIQVVLIPLFILYNKIGIINTLTS 141 +MAAF IE + ++++ VL +FL GIMIP+Q++L+PLF +YN++ ++NT T Sbjct: 92 LFLILCLGSMAAFGIEILKWRFNNVVLVIFLLGIMIPVQMILLPLFAIYNQLQLLNTFTG 151 Query: 142 LILPQVGFALPISIYLFVSFYKYISNEIMEAAVMDGCGVYQVFWRMIFPLSRNTIVTVVV 201 LIL F LP++I+L VSF K + +E++EAA++DG +YQ+F + P+ N I+TV + Sbjct: 152 LILVYTAFGLPLTIFLLVSFAKSLPHEVLEAALIDGANIYQIFLYIALPMMANAIITVGL 211 Query: 202 MNLIFVWNEFIFANTFIHDLKSRTIPVGLMDYIGQYGLTDWGATFAAISITTIPTMVVYF 261 + F+WN+ + + TFI D + RT+ GL+ ++G++G +WG TFA+I+ + IP + +Y Sbjct: 212 VQFFFIWNDLLISLTFISDSELRTVQTGLLSFVGRFGQREWGPTFASITTSVIPILFLYL 271 Query: 262 IFNKSVISGMTAGATKG 278 I N +++ G+T+GA KG Sbjct: 272 ILNNAIMKGLTSGAVKG 288 >ref|NP_691697.1| sugar ABC transporter permease [Oceanobacillus iheyensis HTE831] dbj|BAC12732.1| sugar ABC transporter permease [Oceanobacillus iheyensis HTE831] Length = 290 Score = 207 bits (527), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 95/257 (36%), Positives = 161/257 (62%), Gaps = 2/257 (0%) Query: 22 IQVYPLVWVFISSFKATTDFSGDNPLSLPSQFTFGNYYSVWNKGNLGTYFSNSXXXXXXX 81 + VYP++W+ I+SFK+ +F+ N P++F NY + W NLG F NS Sbjct: 36 VNVYPIIWMAINSFKSEQEFT-VNQFGFPNEFILENYANAWEIANLGVLFKNSIFVCVTA 94 Query: 82 XXXXXXFSAMAAFVIEKMSFKWSQSVLFLFLCGIMIPIQVVLIPLFILYNKIGIINTLTS 141 A+A++ + + F++++ + F+ G++IPI L+P+FIL +G++NT + Sbjct: 95 TLVTVIIGALASYFLARFKFRFNKIMYTFFIFGLLIPIHATLVPMFILMKNLGLLNTEIT 154 Query: 142 LILPQVGFALPISIYLFVSFYKYISNEIMEAAVMDGCGVYQVFWRMIFPLSRNTIVTVVV 201 L+ P V F LPI+I++ SF K +I E+A+MDG G++++FW +I P+SR I TVV+ Sbjct: 155 LLFPYVAFHLPITIFILTSFMKAFPKDIEESAIMDGAGIFRIFWSIILPMSRPAIATVVI 214 Query: 202 MNLIFVWNEFIFANTFIHDLKSRTIPVGLMDYIGQYGLTDWGATFAAISITTIPTMVVYF 261 +N I+ WNEF FA I+D +T+P+GL ++ GQ+ T++GA A ++++ +P ++ Y Sbjct: 215 LNFIYNWNEFSFALVLINDPALQTLPLGLANFAGQFT-TNYGAQMAGLTMSLVPIVIFYL 273 Query: 262 IFNKSVISGMTAGATKG 278 K +++GMT+GA KG Sbjct: 274 FLEKEIVNGMTSGAVKG 290 >ref|NP_244549.1| sugar ABC transporter (permease) [Bacillus halodurans] pir||B84110 sugar ABC transporter (permease) BH3682 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07401.1| sugar ABC transporter (permease) [Bacillus halodurans] Length = 293 Score = 186 bits (473), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 148/245 (60%), Gaps = 1/245 (0%) Query: 34 SFKATTDFSGDNPLSLPSQFTFGNYYSVWNKGNLGTYFSNSXXXXXXXXXXXXXFSAMAA 93 S K + PL+LP+ + NY VW +GN+G YF NS ++ Sbjct: 50 SLKDNQEVFNLPPLALPTDPKWENYAKVWTEGNIGLYFLNSVIVTGSAVILTVLLASFVT 109 Query: 94 FVIEKMSFKWSQSVLFLFLCGIMIPIQVVLIPLFILYNKIGIINTLTSLILPQVGFALPI 153 F + +M +K S+ VL LF+ G+MIP+ LIPLF + +G+++ ++IL F LP+ Sbjct: 110 FALTRMRWKLSKLVLGLFMVGLMIPVHSTLIPLFNFFLNVGLMDHPLAIILTYTAFNLPL 169 Query: 154 SIYLFVSFYKYISNEIMEAAVMDGCGVYQVFWRMIFPLSRNTIVTVVVMNLIFVWNEFIF 213 +I + + FY + E+ EAA+MDGC ++++F+++I P++ + T ++N+I+ WNEF+F Sbjct: 170 TIMILLGFYYTLPRELEEAAIMDGCSIHRLFFQIILPMTAPVVATTAIINMIYNWNEFVF 229 Query: 214 ANTFIHDLKSRTIPVGLMDYIGQYGLTDWGATFAAISITTIPTMVVYFIFNKSVISGMTA 273 NTFI K +T+ VG+ ++IGQY TDWGA A + I+ +P ++ + + ++ G+TA Sbjct: 230 VNTFISSDKYKTLTVGIQNFIGQYS-TDWGAIGATLVISILPILLAFIFLSNRIVEGITA 288 Query: 274 GATKG 278 G+ KG Sbjct: 289 GSVKG 293 >ref|NP_694043.1| sugar ABC transporter permease [Oceanobacillus iheyensis HTE831] dbj|BAC15077.1| sugar ABC transporter permease [Oceanobacillus iheyensis HTE831] Length = 273 Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 91/256 (35%), Positives = 158/256 (61%), Gaps = 2/256 (0%) Query: 23 QVYPLVWVFISSFKATTDFSGDNPLSLPSQFTFGNYYSVWNKGNLGTYFSNSXXXXXXXX 82 Q++P++W+ S K + NP +LP+ + NY V+ +G +GTYF NS Sbjct: 20 QIFPIIWLVSFSLKTNQEIFAGNPFALPTDPKWENYLKVF-EGGIGTYFWNSIWITVVAT 78 Query: 83 XXXXXFSAMAAFVIEKMSFKWSQSVLFLFLCGIMIPIQVVLIPLFILYNKIGIINTLTSL 142 ++MA F I +M +K S VL + + G+MIPI LIPL+ ++ + +I+ S+ Sbjct: 79 ILTILIASMATFAITRMKWKLSSFVLGIIMIGLMIPIHSALIPLYNMFLNVNLIDNPVSI 138 Query: 143 ILPQVGFALPISIYLFVSFYKYISNEIMEAAVMDGCGVYQVFWRMIFPLSRNTIVTVVVM 202 ++ + + LPI++ + + FY + EI EAA++DG ++++F+++I PLS + T V++ Sbjct: 139 VVTYMTYNLPITVMILLGFYTTLPREIEEAAIIDGSSIHRLFFKIILPLSAPIMSTTVII 198 Query: 203 NLIFVWNEFIFANTFIHDLKSRTIPVGLMDYIGQYGLTDWGATFAAISITTIPTMVVYFI 262 N+I+ WNEF+F NTFI K +T+ VG+ ++IGQY +TDWGA A + I+ +P ++ + Sbjct: 199 NMIYNWNEFVFVNTFISSDKFKTLTVGIQNFIGQY-MTDWGAIGATLVISVLPIIIAFIF 257 Query: 263 FNKSVISGMTAGATKG 278 F+ ++ G++A A KG Sbjct: 258 FSDKIMEGLSASAVKG 273 >ref|NP_623884.1| Sugar permeases [Thermoanaerobacter tengcongensis] gb|AAM25488.1| Sugar permeases [Thermoanaerobacter tengcongensis] Length = 289 Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 100/256 (39%), Positives = 148/256 (57%), Gaps = 1/256 (0%) Query: 23 QVYPLVWVFISSFKATTDFSGDNPLSLPSQFTFGNYYSVWNKGNLGTYFSNSXXXXXXXX 82 Q++PLVW+ S + D G N L +PS F NYY W G + YF NS Sbjct: 35 QLFPLVWLIDFSLCKSGDVYGANILKIPSPPQFQNYYIAWKDGKIPHYFINSVIVNVTSV 94 Query: 83 XXXXXFSAMAAFVIEKMSFKWSQSVLFLFLCGIMIPIQVVLIPLFILYNKIGIINTLTSL 142 S M A+ +M +K S VL L G+MIPI L+P FI++ +I I+++ +L Sbjct: 95 GLTVILSLMMAYAFVRMKWKLSNKVLMYVLLGLMIPIHATLLPNFIIFKEIHILDSYLAL 154 Query: 143 ILPQVGFALPISIYLFVSFYKYISNEIMEAAVMDGCGVYQVFWRMIFPLSRNTIVTVVVM 202 ILP V F+LP +++L F I EI E+AVMDG G++ + +++IFPLS IVTV V Sbjct: 155 ILPYVAFSLPQAVFLMTGFIGSIPREIEESAVMDGAGIFTILFKIIFPLSTPAIVTVTVT 214 Query: 203 NLIFVWNEFIFANTFIHDLKSRTIPVGLMDYIGQYGLTDWGATFAAISITTIPTMVVYFI 262 + WNEFI A T++ K RT+P + ++ GQY +++ FA ++I +P+++VY + Sbjct: 215 TFLTTWNEFIMAATYLTSDKFRTLPFSVYNFAGQYA-SNYAVQFAVMTIVALPSLIVYIL 273 Query: 263 FNKSVISGMTAGATKG 278 N+ V G+T GA KG Sbjct: 274 LNEQVTKGVTLGALKG 289 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.329 0.142 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 366,104,883 Number of extensions: 13821025 Number of successful extensions: 51705 Number of sequences better than 1.0e-05: 1356 Number of HSP's gapped: 50066 Number of HSP's successfully gapped: 1356 Length of query: 278 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 154 Effective length of database: 420,565,302 Effective search space: 64767056508 Effective search space used: 64767056508 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 125 (52.8 bits)