BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0011.p
         (57 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_388760.1| similar to reticuline oxidase [Bacillus subtili...    78   7e-14
emb|CAB04812.1| hypothetical 54.4 kd protein [Bacillus subtilis]       78   7e-14
ref|NP_830251.1| FAD-dependent oxidase [Bacillus cereus ATCC 145...    75   6e-13
ref|NP_976806.1| conserved hypothetical protein [Bacillus cereus...    72   5e-12
ref|NP_824931.1| putative FAD-dependent oxygenase [Streptomyces ...    67   1e-10

>ref|NP_388760.1| similar to reticuline oxidase [Bacillus subtilis]
 pir||F69816 reticuline oxidase homolog ygaK - Bacillus subtilis
 emb|CAB12708.1| ygaK [Bacillus subtilis subsp. subtilis str. 168]
          Length = 367

 Score = 77.8 bits (190), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/49 (65%), Positives = 39/49 (79%)

Query: 2   EFKGDYVNFPDLQIKNWPKAYYGENFGRLKQVKRKYDPHNVFHFAQSIP 50
           E  GDYVN+PD++I+NWP+ YYGEN  RL++VK  YDP NVF F QSIP
Sbjct: 311 ETMGDYVNWPDIEIRNWPRTYYGENVERLRRVKTTYDPENVFRFEQSIP 359


>emb|CAB04812.1| hypothetical 54.4 kd protein [Bacillus subtilis]
          Length = 480

 Score = 77.8 bits (190), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/49 (65%), Positives = 39/49 (79%)

Query: 2   EFKGDYVNFPDLQIKNWPKAYYGENFGRLKQVKRKYDPHNVFHFAQSIP 50
           E  GDYVN+PD++I+NWP+ YYGEN  RL++VK  YDP NVF F QSIP
Sbjct: 424 ETMGDYVNWPDIEIRNWPRTYYGENVERLRRVKTTYDPENVFRFEQSIP 472


>ref|NP_830251.1| FAD-dependent oxidase [Bacillus cereus ATCC 14579]
 gb|AAP07452.1| FAD-dependent oxidase [Bacillus cereus ATCC 14579]
          Length = 444

 Score = 74.7 bits (182), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/46 (67%), Positives = 37/46 (80%)

Query: 5   GDYVNFPDLQIKNWPKAYYGENFGRLKQVKRKYDPHNVFHFAQSIP 50
           GDYVN+PD+ IKNW  +YYG NF RL++VK  YDP +VFHF QSIP
Sbjct: 395 GDYVNWPDIDIKNWQTSYYGSNFHRLRKVKTMYDPCDVFHFQQSIP 440


>ref|NP_976806.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAS39414.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 328

 Score = 71.6 bits (174), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/46 (67%), Positives = 36/46 (78%)

Query: 5   GDYVNFPDLQIKNWPKAYYGENFGRLKQVKRKYDPHNVFHFAQSIP 50
           GDYVN+PD+ IKNW  +YYG NF RL++VK  YDP NVF F QSIP
Sbjct: 279 GDYVNWPDIDIKNWQTSYYGPNFQRLRKVKTIYDPCNVFRFQQSIP 324


>ref|NP_824931.1| putative FAD-dependent oxygenase [Streptomyces avermitilis MA-4680]
 dbj|BAC71466.1| putative FAD-dependent oxygenase [Streptomyces avermitilis MA-4680]
          Length = 497

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/46 (54%), Positives = 35/46 (76%)

Query: 5   GDYVNFPDLQIKNWPKAYYGENFGRLKQVKRKYDPHNVFHFAQSIP 50
           G YVN P++ +++W  AY+G NF RL+++K KYDP NVF + QSIP
Sbjct: 448 GAYVNVPNIGMQDWETAYWGSNFDRLRKIKAKYDPRNVFQYEQSIP 493


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.321    0.140    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 97,259,297
Number of extensions: 3085459
Number of successful extensions: 5997
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 6005
Number of HSP's successfully gapped: 14
Length of query: 57
Length of database: 757,237,578
Length adjustment: 29
Effective length of query: 28
Effective length of database: 678,499,707
Effective search space: 18997991796
Effective search space used: 18997991796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)