BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0006.p
         (67 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_980885.1| transcriptional regulator, TetR family [Bacillu...    84   1e-15
ref|NP_658514.1| tetR, Bacterial regulatory proteins, tetR famil...    84   1e-15
ref|NP_834209.1| Transcriptional regulator, TetR family [Bacillu...    82   3e-15

>ref|NP_980885.1| transcriptional regulator, TetR family [Bacillus cereus ATCC
          10987]
 gb|AAS43493.1| transcriptional regulator, TetR family [Bacillus cereus ATCC
          10987]
          Length = 212

 Score = 84.0 bits (206), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/58 (68%), Positives = 48/58 (82%)

Query: 1  VRKAVSVETYIEKIKPVIRRTKFSQLKVDDLAKYMDISKVTLYKYFASKDDIIEQVVD 58
          +RK     TYI KIKPVIR+T FSQLK+D++AKYMDISK TLYK F+SKD+IIE VV+
Sbjct: 1  MRKVACANTYINKIKPVIRKTSFSQLKIDEIAKYMDISKATLYKRFSSKDEIIEAVVE 58


>ref|NP_658514.1| tetR, Bacterial regulatory proteins, tetR family [Bacillus
          anthracis A2012]
 ref|NP_846932.1| transcriptional regulator, TetR family [Bacillus anthracis str.
          Ames]
 gb|AAP28418.1| transcriptional regulator, TetR family [Bacillus anthracis str.
          Ames]
          Length = 212

 Score = 84.0 bits (206), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/58 (68%), Positives = 48/58 (82%)

Query: 1  VRKAVSVETYIEKIKPVIRRTKFSQLKVDDLAKYMDISKVTLYKYFASKDDIIEQVVD 58
          +RK     TYI KIKPVIR+T FSQLK+D++AKYMDISK TLYK F+SKD+IIE VV+
Sbjct: 1  MRKVACANTYINKIKPVIRKTSFSQLKIDEIAKYMDISKATLYKRFSSKDEIIEAVVE 58


>ref|NP_834209.1| Transcriptional regulator, TetR family [Bacillus cereus ATCC
          14579]
 gb|AAP11410.1| Transcriptional regulator, TetR family [Bacillus cereus ATCC
          14579]
          Length = 212

 Score = 82.4 bits (202), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/58 (67%), Positives = 48/58 (82%)

Query: 1  VRKAVSVETYIEKIKPVIRRTKFSQLKVDDLAKYMDISKVTLYKYFASKDDIIEQVVD 58
          +RK     TYI KIKP+IR+T FSQLK+D++AKYMDISK TLYK F+SKD+IIE VV+
Sbjct: 1  MRKVACANTYINKIKPIIRKTSFSQLKIDEIAKYMDISKATLYKRFSSKDEIIEVVVE 58


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.319    0.135    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 76,576,581
Number of extensions: 2099466
Number of successful extensions: 9301
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9301
Number of HSP's successfully gapped: 3
Length of query: 67
Length of database: 757,237,578
Length adjustment: 38
Effective length of query: 29
Effective length of database: 654,063,816
Effective search space: 18967850664
Effective search space used: 18967850664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)