BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0598.0026.p (217 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00124192.1| COG1802: Transcriptional regulators [Pseudomo... 100 2e-20 ref|ZP_00084621.1| COG1802: Transcriptional regulators [Pseudomo... 100 2e-20 gb|EAG65866.1| unknown [environmental sequence] 100 2e-20 ref|NP_792105.1| transcriptional regulator, GntR family [Pseudom... 100 2e-20 ref|NP_249488.1| probable transcriptional regulator [Pseudomonas... 100 4e-20 >ref|ZP_00124192.1| COG1802: Transcriptional regulators [Pseudomonas syringae pv. syringae B728a] Length = 242 Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 108/206 (52%), Gaps = 13/206 (6%) Query: 9 DTLDQAVYLRLREMIINGEFQPDQLIIQNQLTETLGVSRTPLRKAMAELEMEGLLYRTSK 68 +TL + V+ R++ I+ GE P I + +L T G+SR PLR+A+ LE + L+ R Sbjct: 19 ETLSENVFRRIQSAIVKGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQRLVVRVPH 78 Query: 69 -GWYAKSFTLDDMISVFELRAVLEGLACRLIAPVIEEEKIIYMRAIFQSAYQKRQDQDKD 127 G S + ++I ++E+R LEG+ACRL A + + +I +R + + + Q Sbjct: 79 VGARVVSLSHAELIELYEIRESLEGMACRLAAERMTQAEIDELRGVLDTHERDAAFQAGI 138 Query: 128 AYYL--ADKKFHNLIASEIQDFHLSKSL--ESFKV-----IQTSLTQGLYRSPDETYPEH 178 YY D FH I + LS+ L E +++ IQ S T P + + EH Sbjct: 139 GYYQQEGDFDFHYRIIQGSGNRTLSQMLCGELYQLVRMYRIQYSTTPN---RPRQAFAEH 195 Query: 179 MAIIDAIEKRDGDLAEELMRNHIRAT 204 I+DAI RDG+LAE LMR HI A+ Sbjct: 196 HRILDAIADRDGELAELLMRRHIGAS 221 >ref|ZP_00084621.1| COG1802: Transcriptional regulators [Pseudomonas fluorescens PfO-1] Length = 241 Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 109/219 (49%), Gaps = 39/219 (17%) Query: 9 DTLDQAVYLRLREMIINGEFQPDQLIIQNQLTETLGVSRTPLRKAMAELEMEGLLYRTSK 68 +TL + V+ R++ I+ GE P I + +L T G+SR PLR+A+ LE + LL R Sbjct: 16 ETLSENVFRRIQAAIVKGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQRLLVRVPH 75 Query: 69 -GWYAKSFTLDDMISVFELRAVLEGLACRLIAPVIEEEKIIYMRAIFQSAYQKRQDQDKD 127 G S + +++ ++E+R LEG+ACRL A + E+I +R + ++ + Q Sbjct: 76 VGARVVSLSHAELLELYEIRESLEGMACRLAAERMTVEEIDELRRVLETHERDAAFQAGV 135 Query: 128 AYYLADKKFHNLIASEIQDFHLSKSLESFKVIQTS----LTQGL----------YR---- 169 YY + F DFH +++IQ S LTQ L YR Sbjct: 136 GYYQQEGDF---------DFH-------YRIIQGSGNRTLTQMLCGELYQLVRMYRIQFS 179 Query: 170 ----SPDETYPEHMAIIDAIEKRDGDLAEELMRNHIRAT 204 P + + EH I+DAI RDG+LAE LMR HI A+ Sbjct: 180 TTPNRPRQAFAEHHRILDAIADRDGELAELLMRRHIGAS 218 >gb|EAG65866.1| unknown [environmental sequence] Length = 252 Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 110/221 (49%), Gaps = 27/221 (12%) Query: 7 VKDTLDQAV--YLRLREMIINGEFQPDQLIIQNQLTETLGVSRTPLRKAMAELEMEGLLY 64 V+ QAV LRLREMI+ GE I + L E LGVSRTP+R A+ LE EGLL+ Sbjct: 10 VEAGASQAVKAQLRLREMILAGELPGGARIAELTLVEKLGVSRTPIRAALMRLEQEGLLH 69 Query: 65 RTSKGWYA-KSFTLDDMISVFELRAVLEGLACRLIA-----PVIEEEKIIYMRAIFQS-A 117 R G YA ++F+ D+ ELR +EGLA RL A P + E + AI + A Sbjct: 70 RLPGGGYAVRTFSETDVADAIELRGTMEGLAARLAAERGVPPALLAEAHACLDAIDATLA 129 Query: 118 YQKRQDQDKDAYYLADKKFH----NLIASEIQDFHLSK-------SLESFKVIQTSLTQG 166 D+ Y + +FH ++ S++ L + S +F V+QT Q Sbjct: 130 PSTLDDEGFSRYVELNARFHLLLSRMVGSDVVARELDRVKGLPFASPSAFVVVQTHSAQA 189 Query: 167 ---LYRSPDETYPEHMAIIDAIEKRDGDLAEELMRNHIRAT 204 L + D +H +DAIE+R+G AE ++R H R T Sbjct: 190 RDMLVVAQD----QHRQALDAIERREGARAEAILREHSRIT 226 >ref|NP_792105.1| transcriptional regulator, GntR family [Pseudomonas syringae pv. tomato str. DC3000] gb|AAO55800.1| transcriptional regulator, GntR family [Pseudomonas syringae pv. tomato str. DC3000] Length = 232 Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 13/206 (6%) Query: 9 DTLDQAVYLRLREMIINGEFQPDQLIIQNQLTETLGVSRTPLRKAMAELEMEGLLYRTSK 68 +TL + V+ R++ I+ GE P I + +L T G+SR PLR+A+ LE + L+ R Sbjct: 9 ETLSENVFRRIQSAIVKGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQRLVVRVPH 68 Query: 69 -GWYAKSFTLDDMISVFELRAVLEGLACRLIAPVIEEEKIIYMRAIFQSAYQKRQDQDKD 127 G + + ++I ++E+R LEG+ACRL A + + +I +R++ + + Q Sbjct: 69 VGARVVALSHAELIELYEIRESLEGMACRLAAERMSQAEIDELRSVLDTHERDAAFQAGI 128 Query: 128 AYYL--ADKKFHNLIASEIQDFHLSKSL--ESFKV-----IQTSLTQGLYRSPDETYPEH 178 YY D FH I + LS+ L E +++ IQ S T P + + EH Sbjct: 129 GYYQQEGDFDFHYRIIQGSGNRTLSQMLCGELYQLVRMYRIQFSTTPN---RPRQAFAEH 185 Query: 179 MAIIDAIEKRDGDLAEELMRNHIRAT 204 I+DAI +RDG+LAE LMR HI A+ Sbjct: 186 HRILDAIAERDGELAELLMRRHIGAS 211 >ref|NP_249488.1| probable transcriptional regulator [Pseudomonas aeruginosa PA01] pir||B83545 probable transcription regulator PA0797 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG04186.1| probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Length = 240 Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 13/206 (6%) Query: 9 DTLDQAVYLRLREMIINGEFQPDQLIIQNQLTETLGVSRTPLRKAMAELEMEGLLYRTSK 68 +TL + V+ +++ I++GE P I + +L T G+SR PLR+A+ LE LL R Sbjct: 16 ETLSEHVFRKIQSAIVSGEIAPGSKISEPELARTYGISRGPLREAIHRLEGLRLLVRVPH 75 Query: 69 -GWYAKSFTLDDMISVFELRAVLEGLACRLIAPVIEEEKIIYMRAIFQSAYQKRQDQDKD 127 G S + ++I ++E+R LEG+ACRL A + + +I +R + + + Q Sbjct: 76 VGARVVSLSHAELIELYEIRESLEGMACRLAAERMSQAEIDELRRVLDTHERDEAFQAGR 135 Query: 128 AYYL--ADKKFHNLIASEIQDFHLSKSL--ESFKV-----IQTSLTQGLYRSPDETYPEH 178 YY D FH I + L++ L E +++ IQ S T P + + EH Sbjct: 136 GYYQQEGDYDFHYRIIQGSGNATLTRMLCGELYQLVRMYRIQYSTTPN---RPRQAFAEH 192 Query: 179 MAIIDAIEKRDGDLAEELMRNHIRAT 204 I+DAI RDG+LAE LMR HI A+ Sbjct: 193 HRILDAIADRDGELAELLMRRHISAS 218 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.136 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 283,036,588 Number of extensions: 10371126 Number of successful extensions: 30023 Number of sequences better than 1.0e-05: 460 Number of HSP's gapped: 29795 Number of HSP's successfully gapped: 460 Length of query: 217 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 96 Effective length of database: 428,710,599 Effective search space: 41156217504 Effective search space used: 41156217504 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)