BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0598.0025.p (201 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_694176.1| L-fuculose-phosphate aldolase [Oceanobacillus i... 207 2e-52 ref|NP_929745.1| hypothetical protein [Photorhabdus luminescens ... 97 2e-19 ref|NP_437913.1| putative aldolase, possibly L-fuculose-phosphat... 93 3e-18 ref|NP_670251.1| putative epimerase/aldolase [Yersinia pestis KI... 93 4e-18 ref|NP_404835.1| putative class II aldolase-family protein [Yers... 93 4e-18 >ref|NP_694176.1| L-fuculose-phosphate aldolase [Oceanobacillus iheyensis HTE831] dbj|BAC15210.1| L-fuculose-phosphate aldolase [Oceanobacillus iheyensis HTE831] Length = 214 Score = 207 bits (526), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 105/201 (52%), Positives = 134/201 (66%), Gaps = 4/201 (1%) Query: 1 MMHYGLAWGNSGNISSRVDADSMLITGSGTYMGHLEDGDLVRVNISSGEYDAAGKRPSKE 60 MM LAWG +GNIS+R D +I+ +GTY+G LE D GE+ GK+PSKE Sbjct: 16 MMDKDLAWGTAGNISAR-SGDGYIISATGTYLGELEVEDFSFC--KEGEH-VVGKKPSKE 71 Query: 61 IPMHAAIYEARPDAGFIIHASPFWTTLAACSDLQIESKLFVESMYYAERIAYVDYYHPGS 120 MH IYE RP+ ++HASPF++TL A SD+++ S FVESMYY ERI V +YHPGS Sbjct: 72 FLMHEWIYEERPEINAVLHASPFYSTLIANSDIELPSNYFVESMYYLERITRVPFYHPGS 131 Query: 121 RELGEAVREKAKEANVIILKNHGIIVFDSSMKEARMGLETIEMTCRMAATMQMTGLTPTV 180 +EL +AV+E+AK+ANV +L+NHGIIV D ++KEAR L+T+E T RM T + Sbjct: 132 KELAQAVKERAKDANVFLLENHGIIVCDVNLKEARTALQTLEYTARMHITALEKNININS 191 Query: 181 LKPETQQDFLQHSGYKPSRLW 201 L ET DFL HSGYKP R W Sbjct: 192 LSDETVYDFLHHSGYKPLRDW 212 >ref|NP_929745.1| hypothetical protein [Photorhabdus luminescens subsp. laumondii TTO1] emb|CAE14883.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 219 Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 101/181 (55%), Gaps = 6/181 (3%) Query: 1 MMHYGLAWGNSGNISSRVDADSMLITGSGTYMGHLEDGDLVRVNISSGEYDAAGKRPSKE 60 M + G + G +GNIS++++ +++IT + + G L+ L +++ + G + +G +P+KE Sbjct: 23 MFYRGYSSGGAGNISAKLEDGTIIITPTNSSFGDLQANRLSKLD-AEGNW-LSGDKPTKE 80 Query: 61 IPMHAAIYEARPDAGFIIHA-SPFWTTLAACSDLQIESKLFVESMYYAERIA---YVDYY 116 + MH A+Y RP+ ++H SP+ T L+ S+L + L + YY R+ V Y Sbjct: 81 VSMHLAMYRNRPECHAVVHLHSPWLTALSCLSNLDRSNCLPPITPYYVMRVGKLPLVKYL 140 Query: 117 HPGSRELGEAVREKAKEANVIILKNHGIIVFDSSMKEARMGLETIEMTCRMAATMQMTGL 176 PG +GE + + A + N I+L NHG +V ++++A E +E T R+ T+ G Sbjct: 141 PPGDERIGEEIAKLAAKHNAILLSNHGPVVGGKTLRQAFFNAEELEDTARLYLTLLPHGF 200 Query: 177 T 177 T Sbjct: 201 T 201 >ref|NP_437913.1| putative aldolase, possibly L-fuculose-phosphate aldolase protein [Sinorhizobium meliloti 1021] pir||E96013 probable aldolase, possibly L-fuculose-phosphate aldolase protein [imported] - Sinorhizobium meliloti (strain 1021) magaplasmid pSymB emb|CAC49773.1| putative aldolase, possibly L-fuculose-phosphate aldolase protein [Sinorhizobium meliloti] Length = 225 Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 8/195 (4%) Query: 1 MMHYGLAWGNSGNISSRVDADSMLITGSGTYMGHLEDGDLVRVNISSGEYDAAGKRPSKE 60 + GL G+SGNIS R++ L+T + +G L+ + R++ +G +G +P+KE Sbjct: 17 LFERGLTPGSSGNISMRLEDGGWLVTPTNASLGFLDPARISRLD--AGGRLVSGDKPTKE 74 Query: 61 IPMHAAIYEARPDAGFIIHA-SPFWTTLAACSDLQIESKLFVESMYYAER---IAYVDYY 116 IP+H+A+YE R A I+H S L ++ + L + YY R A V YY Sbjct: 75 IPLHSALYETRGSARAIVHLHSTHAVALTMLPEIDARAALPPMTPYYLMRAGETALVPYY 134 Query: 117 HPGSRELGEAVREKAKEANVIILKNHGIIVFDSSMKEARMGLETIEMTCRMAATMQMTGL 176 PG + +A+R A + ++L NHG +V S++ A E +E T ++ + + L Sbjct: 135 RPGDPAVADAIRGLAGRYSSVLLSNHGPVVAGDSLEAAVFATEELEETAKL--YLLLRNL 192 Query: 177 TPTVLKPETQQDFLQ 191 P L P+ D ++ Sbjct: 193 NPRYLSPQQVADLVE 207 >ref|NP_670251.1| putative epimerase/aldolase [Yersinia pestis KIM] ref|NP_992284.1| putative class II aldolase-family protein [Yersinia pestis biovar Mediaevails str. 91001] gb|AAM86502.1| putative epimerase/aldolase [Yersinia pestis KIM] gb|AAS61161.1| putative class II aldolase-family protein [Yersinia pestis biovar Mediaevails str. 91001] Length = 209 Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 88/160 (55%), Gaps = 6/160 (3%) Query: 1 MMHYGLAWGNSGNISSRVDADSMLITGSGTYMGHLEDGDLVRVNISSGEYDAAGKRPSKE 60 + GL+ G +GNIS ++ S L+T + + +G L+ L +++ +G +PSKE Sbjct: 46 LFQRGLSSGGAGNISVKLPDGSFLVTPTNSCLGELDSQTLSKLDAEGNHI--SGDKPSKE 103 Query: 61 IPMHAAIYEARPDAGFIIHA-SPFWTTLAACSDLQIESKLFVESMYYAERIA---YVDYY 116 +PMH A+Y AR G ++H SP+ T L+ +++ + L + YY RI + Y Sbjct: 104 VPMHLAMYRARSTCGAVVHLHSPYLTALSCLTNIDHTNCLPPITPYYVMRIGRLPLLSYM 163 Query: 117 HPGSRELGEAVREKAKEANVIILKNHGIIVFDSSMKEARM 156 PG + A+ + A++ N ++L NHG +V S++K ++ Sbjct: 164 KPGDPAIATALADTARDHNAVLLANHGPVVSGSTLKNLKI 203 >ref|NP_404835.1| putative class II aldolase-family protein [Yersinia pestis] pir||AC0151 probable class II aldolase-family protein YPO1236 [imported] - Yersinia pestis (strain CO92) emb|CAC90070.1| putative class II aldolase-family protein [Yersinia pestis CO92] Length = 203 Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 88/160 (55%), Gaps = 6/160 (3%) Query: 1 MMHYGLAWGNSGNISSRVDADSMLITGSGTYMGHLEDGDLVRVNISSGEYDAAGKRPSKE 60 + GL+ G +GNIS ++ S L+T + + +G L+ L +++ +G +PSKE Sbjct: 40 LFQRGLSSGGAGNISVKLPDGSFLVTPTNSCLGELDSQTLSKLDAEGNHI--SGDKPSKE 97 Query: 61 IPMHAAIYEARPDAGFIIHA-SPFWTTLAACSDLQIESKLFVESMYYAERIA---YVDYY 116 +PMH A+Y AR G ++H SP+ T L+ +++ + L + YY RI + Y Sbjct: 98 VPMHLAMYRARSTCGAVVHLHSPYLTALSCLTNIDHTNCLPPITPYYVMRIGRLPLLSYM 157 Query: 117 HPGSRELGEAVREKAKEANVIILKNHGIIVFDSSMKEARM 156 PG + A+ + A++ N ++L NHG +V S++K ++ Sbjct: 158 KPGDPAIATALADTARDHNAVLLANHGPVVSGSTLKNLKI 197 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.132 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 290,764,925 Number of extensions: 10874783 Number of successful extensions: 26791 Number of sequences better than 1.0e-05: 185 Number of HSP's gapped: 26892 Number of HSP's successfully gapped: 186 Length of query: 201 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 81 Effective length of database: 431,425,698 Effective search space: 34945481538 Effective search space used: 34945481538 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)