BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0598.0023.p
         (312 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00097476.1| hypothetical protein [Desulfitobacterium hafn...   142   1e-32

>ref|ZP_00097476.1| hypothetical protein [Desulfitobacterium hafniense]
          Length = 303

 Score =  142 bits (357), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 149/293 (50%), Gaps = 1/293 (0%)

Query: 3   NWREQLEISLVHPGLWPAAATDEQVWERSVRLVLEDSFFGRIEVAPIANPQRRRRFAEWL 62
           ++R+ +++ LVH   +P+ +  E     ++R +  D +F  +E+  I +P  R++  + +
Sbjct: 4   SFRKYMKVGLVHFMAYPSTSKGEGPILETLRRIAMDEYFEVVEMTWIKDPAVRKKARQII 63

Query: 63  RVTNMKASYLLQPLIFGQGYNLQSADQAERELAIKALIAAMDDALESGADRVTVISGPED 122
             ++M+ SY   P +     N+ S ++ ER  A+  +   +D+A E GA     +SG  +
Sbjct: 64  ETSHMEFSYAGMPRLLPTKQNINSLNEEERLQALANVKEGIDEAYEMGAKDFAFLSGKYE 123

Query: 123 PQAXXXXXXXXXXXXXXXXXXAAAERKLKLDLELFDTAVDKKRLFGDSRMADKLMQQLAG 182
                                A ++  +K+ +E+FD  VDK  L G   +  +  +++  
Sbjct: 124 EPRKEEAYQALIRSTKEICAYAKSKGDMKIAIEVFDYDVDKCSLIGPVALTQRYAKEIRR 183

Query: 183 RTTHLALLADLSHVPLLGETIEDTVSNTQAWLGHVHIGNCCTNPE-DERYGDKHPYFGYP 241
              +  L+ DLSH+P L ET  +++   + ++ H H+GN     +    YGD+HP FG+P
Sbjct: 184 EYDNFGLMVDLSHLPQLRETPAESLIPVKDYIIHAHMGNTLVKDKLSPVYGDEHPRFGFP 243

Query: 242 GGCHDVPEVARFLQALISAGYLSSDRIAGLGIEIITAVDEDPGLLIAGAKRTL 294
           G  +DV E+  +L+ L+  G+L+ +    + +E+    DEDP L+IA AKR L
Sbjct: 244 GSENDVAELVEYLRVLLDIGFLNKENRPIVSLEVKPYEDEDPELVIANAKRVL 296


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 431,400,420
Number of extensions: 16245992
Number of successful extensions: 32661
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 32659
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 757,237,578
Length adjustment: 125
Effective length of query: 187
Effective length of database: 417,850,203
Effective search space: 78137987961
Effective search space used: 78137987961
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)