BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0598.0018.p (203 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_201555.2| glycosyl hydrolase family protein 43 [Arabidops... 175 7e-43 ref|NP_975008.1| glycosyl hydrolase family protein 43 [Arabidops... 174 8e-43 emb|CAA10760.1| hypothetical protein [Arabidopsis thaliana] 174 9e-43 ref|NP_812596.1| conserved hypothetical protein [Bacteroides the... 172 4e-42 ref|NP_190557.1| glycosyl hydrolase family protein 43 [Arabidops... 168 6e-41 >ref|NP_201555.2| glycosyl hydrolase family protein 43 [Arabidopsis thaliana] gb|AAL48230.1| AT5g67540/K9I9_10 [Arabidopsis thaliana] gb|AAM26649.1| AT5g67540/K9I9_10 [Arabidopsis thaliana] Length = 466 Score = 175 bits (443), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 88/188 (46%), Positives = 118/188 (62%), Gaps = 6/188 (3%) Query: 1 MWMHLDNPTRTYAGAGVAVSDTPQGPFSFLHAKKPNRLDSRDMTLFQDTDGKVYLVHSAN 60 MWMH+D+ T A GVA+S++P GPF +L++K+P+ DSRDMT+F+D DG YL++S+ Sbjct: 247 MWMHIDDANYTKASVGVAISNSPTGPFEYLYSKRPHGFDSRDMTVFKDDDGVAYLIYSSE 306 Query: 61 YNRTLYISELTDDYCDVTGLTFPVLEDQMREAPALMKRDEKYYMITSGCTGWEPNSALYA 120 N L+I LT+DY DVT + V+ Q REAPA+ K YYM+TS CTGW PN AL Sbjct: 307 VNSVLHIGPLTEDYLDVTPVMKRVMVGQHREAPAIFKHQNIYYMVTSWCTGWAPNEALAH 366 Query: 121 ESEYLFNSWRLIDNPCEGPN--YR-QTFFGQSTYIFYVNGQP---YLMLDHWVPHNLQGS 174 +E + W + NPC G N +R TFF QSTY+ + G P M D W P +L+ S Sbjct: 367 AAESIMGPWEKLGNPCIGGNKVFRLTTFFAQSTYVIPLPGVPGAFIFMADRWNPADLRDS 426 Query: 175 GYSILPVT 182 Y LP+ Sbjct: 427 RYVWLPLV 434 >ref|NP_975008.1| glycosyl hydrolase family protein 43 [Arabidopsis thaliana] dbj|BAB08462.1| unnamed protein product [Arabidopsis thaliana] Length = 471 Score = 174 bits (442), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 88/188 (46%), Positives = 118/188 (62%), Gaps = 6/188 (3%) Query: 1 MWMHLDNPTRTYAGAGVAVSDTPQGPFSFLHAKKPNRLDSRDMTLFQDTDGKVYLVHSAN 60 MWMH+D+ T A GVA+S++P GPF +L++K+P+ DSRDMT+F+D DG YL++S+ Sbjct: 252 MWMHIDDANYTKASVGVAISNSPTGPFEYLYSKRPHGFDSRDMTVFKDDDGVAYLIYSSE 311 Query: 61 YNRTLYISELTDDYCDVTGLTFPVLEDQMREAPALMKRDEKYYMITSGCTGWEPNSALYA 120 N L+I LT+DY DVT + V+ Q REAPA+ K YYM+TS CTGW PN AL Sbjct: 312 VNSVLHIGPLTEDYLDVTPVMKRVMVGQHREAPAIFKHQNIYYMVTSWCTGWAPNEALAH 371 Query: 121 ESEYLFNSWRLIDNPCEGPN--YR-QTFFGQSTYIFYVNGQP---YLMLDHWVPHNLQGS 174 +E + W + NPC G N +R TFF QSTY+ + G P M D W P +L+ S Sbjct: 372 AAESIMGPWEKLGNPCIGGNKVFRLTTFFAQSTYVIPLPGVPGAFIFMADRWNPADLRDS 431 Query: 175 GYSILPVT 182 Y LP+ Sbjct: 432 RYVWLPLV 439 >emb|CAA10760.1| hypothetical protein [Arabidopsis thaliana] Length = 239 Score = 174 bits (442), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 88/188 (46%), Positives = 118/188 (62%), Gaps = 6/188 (3%) Query: 1 MWMHLDNPTRTYAGAGVAVSDTPQGPFSFLHAKKPNRLDSRDMTLFQDTDGKVYLVHSAN 60 MWMH+D+ T A GVA+S++P GPF +L++K+P+ DSRDMT+F+D DG YL++S+ Sbjct: 20 MWMHIDDANYTKASVGVAISNSPTGPFEYLYSKRPHGFDSRDMTVFKDDDGVAYLIYSSE 79 Query: 61 YNRTLYISELTDDYCDVTGLTFPVLEDQMREAPALMKRDEKYYMITSGCTGWEPNSALYA 120 N L+I LT+DY DVT + V+ Q REAPA+ K YYM+TS CTGW PN AL Sbjct: 80 VNSVLHIGPLTEDYLDVTPVMKRVMVGQHREAPAIFKHQNIYYMVTSWCTGWAPNEALAH 139 Query: 121 ESEYLFNSWRLIDNPCEGPN--YR-QTFFGQSTYIFYVNGQP---YLMLDHWVPHNLQGS 174 +E + W + NPC G N +R TFF QSTY+ + G P M D W P +L+ S Sbjct: 140 AAESIMGPWEKLGNPCIGGNKVFRLTTFFAQSTYVIPLPGVPGAFIFMADRWNPADLRDS 199 Query: 175 GYSILPVT 182 Y LP+ Sbjct: 200 RYVWLPLV 207 >ref|NP_812596.1| conserved hypothetical protein [Bacteroides thetaiotaomicron VPI-5482] gb|AAO78790.1| conserved hypothetical protein [Bacteroides thetaiotaomicron VPI-5482] Length = 355 Score = 172 bits (436), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 86/199 (43%), Positives = 123/199 (61%), Gaps = 3/199 (1%) Query: 1 MWMHLDNPTRTYAGAGVAVSDTPQGPFSFLHAKKPNRLDSRDMTLFQDTDGKVYLVHSAN 60 MW H+++ + A AGVAVSD P GPF++L + +PN SRD T+F D DG+ Y +S+ Sbjct: 135 MWAHVESADYSKACAGVAVSDFPNGPFTYLGSFRPNNAMSRDQTVFVDDDGRAYQFYSSE 194 Query: 61 YNRTLYISELTDDYCDVTGLTFPVLEDQMREAPALMKRDEKYYMITSGCTGWEPNSALYA 120 N T+YIS LTDDY +G + REAPA+ K KYYM++SGCTGW+PN A A Sbjct: 195 NNETMYISLLTDDYLKPSGRFTRNFIKESREAPAVFKHKGKYYMLSSGCTGWDPNVAEIA 254 Query: 121 ESEYLFNSWRLIDNPCEGPNYRQTFFGQSTYIFYVNGQP---YLMLDHWVPHNLQGSGYS 177 ++ + +W+ I NPC GP+ +TF+ QSTY+ V G+ M D W +L+ S Y Sbjct: 255 VADSIMGTWKTIGNPCTGPDADKTFYAQSTYVQPVIGKKNAYIAMFDRWKKKDLEDSRYV 314 Query: 178 ILPVTSEKGLLTVKWKDEF 196 LPV + G +T+ W +++ Sbjct: 315 WLPVLIKDGAITIPWHEKW 333 >ref|NP_190557.1| glycosyl hydrolase family protein 43 [Arabidopsis thaliana] pir||T46054 hypothetical protein T16K5.230 - Arabidopsis thaliana emb|CAB66926.1| putative protein [Arabidopsis thaliana] gb|AAL36342.1| unknown protein [Arabidopsis thaliana] gb|AAM20364.1| unknown protein [Arabidopsis thaliana] Length = 466 Score = 168 bits (426), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 84/187 (44%), Positives = 115/187 (61%), Gaps = 6/187 (3%) Query: 1 MWMHLDNPTRTYAGAGVAVSDTPQGPFSFLHAKKPNRLDSRDMTLFQDTDGKVYLVHSAN 60 MWMH+D+ T A GVA+SD P GPF +L+++ P+ DSRDMT+++D D YL++S+ Sbjct: 239 MWMHIDDANYTKASVGVAISDNPTGPFDYLYSRSPHGFDSRDMTVYKDDDNVAYLIYSSE 298 Query: 61 YNRTLYISELTDDYCDVTGLTFPVLEDQMREAPALMKRDEKYYMITSGCTGWEPNSALYA 120 N L+I LT++Y DV + ++ Q REAPA+ K YYMITSGCTGW PN AL Sbjct: 299 DNSVLHIGPLTENYLDVKPVMKRIMVGQHREAPAIFKHQNTYYMITSGCTGWAPNEALAH 358 Query: 121 ESEYLFNSWRLIDNPCEGPN--YRQ-TFFGQSTYIFYVNGQP---YLMLDHWVPHNLQGS 174 +E + W + NPC G N +R TFF QST++ + G P M D W P +L+ S Sbjct: 359 AAESIMGPWETLGNPCVGGNSIFRSTTFFAQSTFVIPLPGVPGVFIFMADRWNPADLRDS 418 Query: 175 GYSILPV 181 Y LP+ Sbjct: 419 RYLWLPL 425 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.136 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 338,363,149 Number of extensions: 14307776 Number of successful extensions: 24686 Number of sequences better than 1.0e-05: 22 Number of HSP's gapped: 24659 Number of HSP's successfully gapped: 22 Length of query: 203 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 83 Effective length of database: 431,425,698 Effective search space: 35808332934 Effective search space used: 35808332934 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)