BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0598.0016.p
         (92 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_241349.1| transcriptional regulator (AraC/XylS family) [B...   101   4e-21
ref|NP_390893.1| similar to transcriptional regulator (AraC/XylS...   101   6e-21
gb|AAC00388.1| transcription regulator [Bacillus subtilis]            100   8e-21
ref|NP_693014.1| transcriptional regulator [Oceanobacillus iheye...    99   4e-20
ref|ZP_00035514.1| COG2207: AraC-type DNA-binding domain-contain...    83   2e-15

>ref|NP_241349.1| transcriptional regulator (AraC/XylS family) [Bacillus halodurans]
 pir||C83710 transcription regulator (AraC/XylS family) BH0483 [imported] -
           Bacillus halodurans (strain C-125)
 dbj|BAB04202.1| transcriptional regulator (AraC/XylS family) [Bacillus halodurans]
          Length = 769

 Score =  101 bits (252), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 66/81 (81%)

Query: 7   EKLESQNKNISERMMEIIHKEYDVELTLDVCASRLNYHPNYLKTVFRKEAGVNFSEYVSN 66
           E+++SQ + IS++++ II  E+D+ELTL+  A RL+Y+PNYL ++FRKE  ++FSEY+S+
Sbjct: 657 ERMDSQYRTISDQIIHIIQNEFDMELTLESIAERLHYNPNYLSSIFRKETNISFSEYLSS 716

Query: 67  YRLGIAKRWLLETDMKISDIA 87
           YRL +AK+WLLET M I +IA
Sbjct: 717 YRLAMAKKWLLETSMPIREIA 737


>ref|NP_390893.1| similar to transcriptional regulator (AraC/XylS family) [Bacillus
           subtilis]
 pir||C69990 transcription regulator AraC/XylS family homolog ytdP - Bacillus
           subtilis
 emb|CAB14993.1| ytdP [Bacillus subtilis subsp. subtilis str. 168]
          Length = 772

 Score =  101 bits (251), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 65/87 (74%)

Query: 1   MASAFHEKLESQNKNISERMMEIIHKEYDVELTLDVCASRLNYHPNYLKTVFRKEAGVNF 60
           M    + + ++Q KNIS+ ++ IIH E++ ELTLD  A RL+Y+PNYL ++F+KE G++F
Sbjct: 653 MTDKVNARADAQYKNISDNIIHIIHHEFESELTLDEIARRLHYNPNYLSSIFKKEMGISF 712

Query: 61  SEYVSNYRLGIAKRWLLETDMKISDIA 87
           SEYVS+YR  +AK WL ETDM + DIA
Sbjct: 713 SEYVSSYRHHMAKSWLAETDMAVKDIA 739


>gb|AAC00388.1| transcription regulator [Bacillus subtilis]
          Length = 244

 Score =  100 bits (250), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 47/90 (52%), Positives = 66/90 (73%)

Query: 1   MASAFHEKLESQNKNISERMMEIIHKEYDVELTLDVCASRLNYHPNYLKTVFRKEAGVNF 60
           M    + + ++Q KNIS+ ++ IIH E++ ELTLD  A RL+Y+PNYL ++F+KE G++F
Sbjct: 125 MTDKVNARADAQYKNISDNIIHIIHHEFESELTLDEIARRLHYNPNYLSSIFKKEMGISF 184

Query: 61  SEYVSNYRLGIAKRWLLETDMKISDIAIPL 90
           SEYVS+YR  +AK WL ETDM + DIA  L
Sbjct: 185 SEYVSSYRHHMAKSWLAETDMAVKDIAEKL 214


>ref|NP_693014.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
 dbj|BAC14049.1| transcriptional regulator (AraC/XylS family) [Oceanobacillus
           iheyensis HTE831]
          Length = 769

 Score = 98.6 bits (244), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 64/84 (76%)

Query: 7   EKLESQNKNISERMMEIIHKEYDVELTLDVCASRLNYHPNYLKTVFRKEAGVNFSEYVSN 66
           E+ ES+ K IS++++ II KEYD  ++LD  A+RL+Y+PNYL ++F+KE    FSEY+  
Sbjct: 655 ERTESKYKTISDKIIHIIQKEYDTAISLDSIAARLHYNPNYLSSIFQKEMKTTFSEYLLK 714

Query: 67  YRLGIAKRWLLETDMKISDIAIPL 90
           YR+ IAK+WL++TD+ + DIAI L
Sbjct: 715 YRINIAKKWLVDTDLSVKDIAIKL 738


>ref|ZP_00035514.1| COG2207: AraC-type DNA-binding domain-containing proteins
          [Enterococcus faecium]
          Length = 98

 Score = 82.8 bits (203), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 51/67 (76%)

Query: 21 MEIIHKEYDVELTLDVCASRLNYHPNYLKTVFRKEAGVNFSEYVSNYRLGIAKRWLLETD 80
          M I++ EYD +L+LDV A RL+Y+PNYL  VF+KE G  F ++V N+RL +AK+WL ET+
Sbjct: 1  MHIVYTEYDRDLSLDVIADRLHYNPNYLSNVFKKETGEKFGDFVQNHRLEVAKKWLKETN 60

Query: 81 MKISDIA 87
          + + +IA
Sbjct: 61 LSVKEIA 67


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.320    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 127,930,374
Number of extensions: 4246438
Number of successful extensions: 13733
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 13736
Number of HSP's successfully gapped: 18
Length of query: 92
Length of database: 757,237,578
Length adjustment: 60
Effective length of query: 32
Effective length of database: 594,331,638
Effective search space: 19018612416
Effective search space used: 19018612416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)