BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0598.0013.p
         (121 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_241349.1| transcriptional regulator (AraC/XylS family) [B...    89   2e-17
ref|NP_693014.1| transcriptional regulator [Oceanobacillus iheye...    77   1e-13
ref|NP_390893.1| similar to transcriptional regulator (AraC/XylS...    59   5e-08
gb|AAC00389.1| YtdP [Bacillus subtilis]                                59   5e-08

>ref|NP_241349.1| transcriptional regulator (AraC/XylS family) [Bacillus halodurans]
 pir||C83710 transcription regulator (AraC/XylS family) BH0483 [imported] -
           Bacillus halodurans (strain C-125)
 dbj|BAB04202.1| transcriptional regulator (AraC/XylS family) [Bacillus halodurans]
          Length = 769

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 76/116 (65%)

Query: 5   KSAFLARLMLFSILLGTIPVIVLGSLSYLKTGSIVQEKVNEGSMQTMTQTQLKVEQILQM 64
           K+ F  RL+LF ++L T+PV+++G+ SY+K    + E+V+E    ++ QTQ  +E IL+ 
Sbjct: 5   KTTFYVRLILFILILSTLPVLLVGTFSYIKASDAIHEQVSEDKRSSVYQTQTNIEHILKT 64

Query: 65  IDNSIIQFINSPLVKESIHMNLSTMDYMGIADLTESLHCLQTYDLGIQEVELLQTG 120
            D+S+  F+NS L++++++  L+   +    D+ + L  LQTY++GI+++ LL T 
Sbjct: 65  ADHSLTYFVNSSLLRDTLNQPLTATQFQLYNDIRKELTHLQTYEIGIEDIVLLSTN 120


>ref|NP_693014.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
 dbj|BAC14049.1| transcriptional regulator (AraC/XylS family) [Oceanobacillus
           iheyensis HTE831]
          Length = 769

 Score = 76.6 bits (187), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 65/104 (62%)

Query: 11  RLMLFSILLGTIPVIVLGSLSYLKTGSIVQEKVNEGSMQTMTQTQLKVEQILQMIDNSII 70
           +L+ F I+L T+PVI++G  SYL++  I++  V E   Q++ Q Q  VEQ+L+ +DNS+ 
Sbjct: 13  KLITFLIVLSTVPVILVGVFSYLRSSEIIEANVAEEKQQSVYQIQTNVEQVLKSVDNSLT 72

Query: 71  QFINSPLVKESIHMNLSTMDYMGIADLTESLHCLQTYDLGIQEV 114
            F+ SP  ++ +   L+  +++   +  + L  LQT + GIQ+V
Sbjct: 73  HFVRSPTTQDILRDPLNADNFIRYNNFKQELGHLQTLETGIQDV 116


>ref|NP_390893.1| similar to transcriptional regulator (AraC/XylS family) [Bacillus
           subtilis]
 pir||C69990 transcription regulator AraC/XylS family homolog ytdP - Bacillus
           subtilis
 emb|CAB14993.1| ytdP [Bacillus subtilis subsp. subtilis str. 168]
          Length = 772

 Score = 58.5 bits (140), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 60/110 (54%)

Query: 8   FLARLMLFSILLGTIPVIVLGSLSYLKTGSIVQEKVNEGSMQTMTQTQLKVEQILQMIDN 67
           F  +L+ F  LL TIPVI++G  SY  +       V+E    T+ QTQ  +E IL+ +D+
Sbjct: 12  FYYKLITFFCLLSTIPVILVGLFSYEHSQKTAISNVSEEKFDTLQQTQQSIEHILKTVDH 71

Query: 68  SIIQFINSPLVKESIHMNLSTMDYMGIADLTESLHCLQTYDLGIQEVELL 117
           S+  +++SP +  ++   L +  +     + + L+ LQ++D  +  + L+
Sbjct: 72  SLTHYVSSPPLLRTLSEPLHSDQFQIYNQVNQELNYLQSFDTDLSNMTLV 121


>gb|AAC00389.1| YtdP [Bacillus subtilis]
          Length = 514

 Score = 58.5 bits (140), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 60/110 (54%)

Query: 8   FLARLMLFSILLGTIPVIVLGSLSYLKTGSIVQEKVNEGSMQTMTQTQLKVEQILQMIDN 67
           F  +L+ F  LL TIPVI++G  SY  +       V+E    T+ QTQ  +E IL+ +D+
Sbjct: 12  FYYKLITFFCLLSTIPVILVGLFSYEHSQKTAISNVSEEKFDTLQQTQQSIEHILKTVDH 71

Query: 68  SIIQFINSPLVKESIHMNLSTMDYMGIADLTESLHCLQTYDLGIQEVELL 117
           S+  +++SP +  ++   L +  +     + + L+ LQ++D  +  + L+
Sbjct: 72  SLTHYVSSPPLLRTLSEPLHSDQFQIYNQVNQELNYLQSFDTDLSNMTLV 121


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.322    0.136    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 144,718,878
Number of extensions: 4691035
Number of successful extensions: 15654
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 15654
Number of HSP's successfully gapped: 4
Length of query: 121
Length of database: 757,237,578
Length adjustment: 85
Effective length of query: 36
Effective length of database: 526,454,163
Effective search space: 18952349868
Effective search space used: 18952349868
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 120 (50.8 bits)