BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0598.0008.p (299 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_625351.1| putative sugar transport integral membrane prot... 233 4e-60 ref|NP_356295.1| AGR_L_1012p [Agrobacterium tumefaciens] >gi|179... 184 3e-45 ref|NP_437574.1| putative sugar uptake ABC transporter permease ... 182 1e-44 ref|NP_437906.1| putative sugar uptake ABC transporter permease ... 174 2e-42 ref|NP_694395.1| ABC transporter permease [Oceanobacillus iheyen... 171 2e-41 >ref|NP_625351.1| putative sugar transport integral membrane protein [Streptomyces coelicolor A3(2)] emb|CAB95276.1| putative sugar transport integral membrane protein [Streptomyces coelicolor A3(2)] Length = 321 Score = 233 bits (594), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 117/280 (41%), Positives = 173/280 (61%), Gaps = 1/280 (0%) Query: 17 FVLPAVAFMLFFTGYPIIRNIIMSFQNVDVMTLNLPHKEFVGLGNYKGLFADPLLGTSLY 76 FV PAV FML F GYP++RN++MSFQ+ T F G N+ +F D L G +L+ Sbjct: 41 FVAPAVVFMLLFFGYPLVRNVVMSFQDYTPKTFFTGEAPFNGADNWSNVFQDALFGKALW 100 Query: 77 NTLYYTVFSIAIQFVIGFMLALFFNKNFVLSKKVRGLILIPWMIPATITALVFKYMFSAS 136 +TL +T S+ QF IG LA+FF++ F L+ +R LIL+PW++P ++ +V++ + Sbjct: 101 HTLVFTAGSLLGQFCIGLALAVFFSRRFPLNGVLRSLILLPWLVPMVVSGIVWRRILDQD 160 Query: 137 GGIVDQILMDLHITNGPVEWLLHPVSAMWSLILTNSWIGVPFXXXXXXXXXXXXPSELYE 196 G+++ L L I G WL P A+ S+IL N WIG+PF P EL+E Sbjct: 161 TGVLNSFLDTLGI-GGHTPWLTSPEMALLSVILVNIWIGIPFNMVILYGGLQEIPKELHE 219 Query: 197 SASIDGASRWGKLRHITLPLLRPSIEAVLILGFISTFKVFDLVYVMTKGGPVDATETLST 256 +A++DGAS W R +TLP+L+P + VL+LGF+ST K+ DL+ +T GGP DAT+TL T Sbjct: 220 AAALDGASAWRTFRSVTLPMLKPVVTVVLVLGFMSTVKILDLILALTDGGPADATQTLGT 279 Query: 257 LSYKLSFSEFNFSQGAAVANILFAILFVVSLAYLKLVKED 296 L+Y+ SF + +F GA V N+L I V ++ YL+ + + Sbjct: 280 LTYQNSFVQLDFGAGAVVGNVLILISAVFAVFYLRANRTE 319 >ref|NP_356295.1| AGR_L_1012p [Agrobacterium tumefaciens] ref|NP_534838.1| ABC transporter, membrane spanning protein [sugar] [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||F98194 hypothetical protein AGR_L_1012 [imported] - Agrobacterium tumefaciens (strain C58, Cereon) pir||AD3092 hypothetical protein thuF [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gb|AAK89080.1| AGR_L_1012p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL45154.1| ABC transporter, membrane spanning protein [sugar] [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 300 Score = 184 bits (466), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 97/295 (32%), Positives = 164/295 (55%) Query: 2 KFASRLMKGDRVGLLFVLPAVAFMLFFTGYPIIRNIIMSFQNVDVMTLNLPHKEFVGLGN 61 K S + G ++ V + F+ G P+I NI+MSFQ VD+ +L + FVG N Sbjct: 3 KLFSSVNDGRGFDIVLVALPLGFLFVMAGLPLIYNIVMSFQEVDMFSLGTFVRPFVGFKN 62 Query: 62 YKGLFADPLLGTSLYNTLYYTVFSIAIQFVIGFMLALFFNKNFVLSKKVRGLILIPWMIP 121 Y LF P L NT+ + V SIA QF IGF LALFF NF + +RGL L+ W++P Sbjct: 63 YVDLFRQPETLPILMNTVTFVVASIAGQFAIGFGLALFFWVNFPGATWLRGLFLVSWVMP 122 Query: 122 ATITALVFKYMFSASGGIVDQILMDLHITNGPVEWLLHPVSAMWSLILTNSWIGVPFXXX 181 + ++ ++ S G+++ L + + +G + W ++W++++ N W+G F Sbjct: 123 GLVVGAIWNWILSGDFGVLNFFLRESGLISGNIFWRSDANFSLWAVVIANIWLGTSFNMI 182 Query: 182 XXXXXXXXXPSELYESASIDGASRWGKLRHITLPLLRPSIEAVLILGFISTFKVFDLVYV 241 P +LYE+A +DGAS W + ITLP++R +I A++ LG I T + FDL Sbjct: 183 LLSVGLASIPGDLYEAAELDGASAWQRFYTITLPMMRSTIGAIVSLGLIFTLQQFDLFAA 242 Query: 242 MTKGGPVDATETLSTLSYKLSFSEFNFSQGAAVANILFAILFVVSLAYLKLVKED 296 +T GGP +++ ++ LSF +++F++GA ++ I+ + + S+ Y++ + + Sbjct: 243 ITDGGPNNSSNVAQYWAWDLSFRQYDFAKGATISVIMIVFVMLASIVYVRSTRHE 297 >ref|NP_437574.1| putative sugar uptake ABC transporter permease protein [Sinorhizobium meliloti 1021] pir||B95971 probable sugar uptake ABC transporter permease protein SMb21594 [imported] - Sinorhizobium meliloti (strain 1021) magaplasmid pSymB emb|CAC49434.1| putative sugar uptake ABC transporter permease protein [Sinorhizobium meliloti] Length = 300 Score = 182 bits (461), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 96/288 (33%), Positives = 166/288 (57%), Gaps = 2/288 (0%) Query: 9 KGDRVGLLFVLPAVAFMLFFTGYPIIRNIIMSFQNVDVMTLNLPHKEFVGLGNYKGLFAD 68 +G +GL+ LP +AF+ +G P++ N++MSFQ VD+ +L + FVG NY LFA Sbjct: 12 RGFDIGLV-SLP-LAFLFVLSGLPLVYNVVMSFQEVDMFSLGSFSRPFVGFKNYIDLFAQ 69 Query: 69 PLLGTSLYNTLYYTVFSIAIQFVIGFMLALFFNKNFVLSKKVRGLILIPWMIPATITALV 128 P L NT + SIA QF+IGF LALFF NF + +RGL L+ W++P + + Sbjct: 70 PETWPILLNTAIFVTASIAGQFLIGFGLALFFWVNFPGASWLRGLFLVSWVMPGLVVGAI 129 Query: 129 FKYMFSASGGIVDQILMDLHITNGPVEWLLHPVSAMWSLILTNSWIGVPFXXXXXXXXXX 188 + ++ S G+++ +L + + + + W P ++W++I+ N W+G F Sbjct: 130 WNWILSGDFGVLNFLLRETGVISDNIFWRSDPNYSLWAVIIANIWLGTSFNMILLSVGLS 189 Query: 189 XXPSELYESASIDGASRWGKLRHITLPLLRPSIEAVLILGFISTFKVFDLVYVMTKGGPV 248 P +LYE+A +DGA+ + + ITLP++R +I A++ LG I T + FDL +T GGP Sbjct: 190 GIPKDLYEAAELDGANAFQRFWTITLPMMRSTIGAIVALGLIFTLQQFDLFAAITSGGPN 249 Query: 249 DATETLSTLSYKLSFSEFNFSQGAAVANILFAILFVVSLAYLKLVKED 296 + + ++ LSF +++F++GA ++ I+ + S+ Y++ + + Sbjct: 250 NTSNVTQYWAWDLSFRQYDFAKGATISVIMIVFVMFASVVYVRSTRHE 297 >ref|NP_437906.1| putative sugar uptake ABC transporter permease protein [Sinorhizobium meliloti 1021] pir||F96012 probable sugar uptake ABC transporter permease protein SMb20659 [imported] - Sinorhizobium meliloti (strain 1021) magaplasmid pSymB emb|CAC49766.1| putative sugar uptake ABC transporter permease protein [Sinorhizobium meliloti] Length = 310 Score = 174 bits (442), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 97/272 (35%), Positives = 155/272 (56%), Gaps = 4/272 (1%) Query: 4 ASRLMKGDRVGLLFVLPAVAFMLFFTGYPIIRNIIMSFQNVDVMTLNLPHKEFVGLGNYK 63 AS + + +G LF+LPA F++ F YP+ + + F + + F+G+ NY+ Sbjct: 14 ASLMQNNNVLGFLFMLPAAVFLICFLTYPLGLGVWLGFTDTRIGR----DGVFIGIENYE 69 Query: 64 GLFADPLLGTSLYNTLYYTVFSIAIQFVIGFMLALFFNKNFVLSKKVRGLILIPWMIPAT 123 L D + S+YNTL YT + ++FV+G LAL N+N R ++L+PW++P Sbjct: 70 FLARDSVFWLSVYNTLLYTFVASILKFVLGLWLALLLNENLPFKSFFRAIVLLPWVVPTV 129 Query: 124 ITALVFKYMFSASGGIVDQILMDLHITNGPVEWLLHPVSAMWSLILTNSWIGVPFXXXXX 183 ++AL F +++ + I+ LM L I +GP+ +L P +A S+I N W G+PF Sbjct: 130 LSALAFWWIYDSQFSIISWSLMQLGIIDGPINFLGDPNNARASVIAANVWRGIPFVAISL 189 Query: 184 XXXXXXXPSELYESASIDGASRWGKLRHITLPLLRPSIEAVLILGFISTFKVFDLVYVMT 243 P+ L E+AS+DGA+ W + R++TLP+L P I V+ + TF F L+YV+T Sbjct: 190 LAGLQTIPASLQEAASLDGATSWQRFRYVTLPMLTPIIAVVMTFSVLFTFTDFQLIYVLT 249 Query: 244 KGGPVDATETLSTLSYKLSFSEFNFSQGAAVA 275 KGGPV+AT ++TLS++ +GAA+A Sbjct: 250 KGGPVNATHLMATLSFQRGIPGGQLGEGAAIA 281 >ref|NP_694395.1| ABC transporter permease [Oceanobacillus iheyensis HTE831] dbj|BAC15429.1| ABC transporter permease [Oceanobacillus iheyensis HTE831] Length = 441 Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 141/245 (57%), Gaps = 2/245 (0%) Query: 53 HKEFVGLGNYKGLFADPLLGTSLYNTLYYTVFSIAIQFVIGFMLALFFNKNFVLSKKVRG 112 F+GL NY D + +L+NT ++TV ++A++ VIG +AL N+ F +R Sbjct: 191 QSNFIGLKNYGKYLQDNRMWGALWNTTFFTVITVALELVIGVCIALLINRAFKGRGIIRA 250 Query: 113 LILIPWMIPATITALVFKYMFSASGGIVDQILMDLHITNGPVEWLLHPVSA-MWSLILTN 171 +LIPW IP + A+++ ++F GIV L LHI WLL M+S+IL + Sbjct: 251 SVLIPWAIPTAVAAMMWGFLFDGQSGIVAHYLEALHII-PDASWLLSTSDGGMFSIILAD 309 Query: 172 SWIGVPFXXXXXXXXXXXXPSELYESASIDGASRWGKLRHITLPLLRPSIEAVLILGFIS 231 W P+ P LYE++ +DGA+++ + ITLPLL+ SI L+ + Sbjct: 310 VWKTTPYMALLILAGLQTIPESLYEASDVDGANKFQQFWKITLPLLKSSILVALLFRTLD 369 Query: 232 TFKVFDLVYVMTKGGPVDATETLSTLSYKLSFSEFNFSQGAAVANILFAILFVVSLAYLK 291 F+VFDL+YV+T GGP +ATE++S +YK F++ NF +G+ ++ I+F + ++S Y+K Sbjct: 370 AFRVFDLIYVLTGGGPANATESISVYAYKTLFAQQNFGEGSVLSVIVFLFVAIISFIYVK 429 Query: 292 LVKED 296 L+ D Sbjct: 430 LIGSD 434 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.328 0.143 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 415,614,018 Number of extensions: 16578054 Number of successful extensions: 57960 Number of sequences better than 1.0e-05: 1471 Number of HSP's gapped: 56573 Number of HSP's successfully gapped: 1472 Length of query: 299 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 174 Effective length of database: 417,850,203 Effective search space: 72705935322 Effective search space used: 72705935322 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 125 (52.8 bits)