BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0598.0003.p (184 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_052828.1| pXO1-132 [Bacillus anthracis] >gi|21392873|ref|... 98 1e-19 ref|NP_267388.1| integrase-recombinase [Lactococcus lactis subsp... 89 5e-17 ref|NP_687989.1| site-specific recombinase, phage integrase fami... 85 7e-16 ref|NP_721427.1| putative integrase/recombinase; XerC-like [Stre... 84 2e-15 gb|AAC17173.1| unknown [Streptococcus mutans] 84 2e-15 >ref|NP_052828.1| pXO1-132 [Bacillus anthracis] ref|NP_652953.1| integrase/recombinase, phage integrase family, (pXO1-132) [Bacillus anthracis str. A2012] pir||D59107 hypothetical protein pXO1-132 - Bacillus anthracis virulence plasmid pXO1 gb|AAD32436.1| pXO1-132 [Bacillus anthracis] gb|AAM26142.1| integrase/recombinase, phage integrase family, (pXO1-132) [Bacillus anthracis str. A2012] Length = 361 Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 57/132 (43%), Positives = 80/132 (60%), Gaps = 1/132 (0%) Query: 18 TINRKLSSLKSLFDYLQNKAETSDLKPYIQRNVMAKMDLNAVKESQETIANRIEGKILRE 77 INR S+LKSLF YL E + YI RNVM K++L+ K A+ + I E Sbjct: 101 AINRTFSALKSLFKYLAQNTENEQGENYISRNVMDKIELHKEKVDAAARADDVANMIFNE 160 Query: 78 DDFELFRQFVAYDFGEKYKD-NKRIYTFHQFNRERDTAIVSLILGSGLRLSEVAGINMDD 136 D F QF+A D+GE KD + + Y+F Q ++ERD AI+SLILG+GLR+SEVA + + Sbjct: 161 KDDVAFLQFLANDYGEMLKDISPKKYSFFQRDKERDIAIISLILGTGLRVSEVASLTISS 220 Query: 137 LDMNKALVRVIR 148 ++ + V+V R Sbjct: 221 INFRQGKVKVTR 232 >ref|NP_267388.1| integrase-recombinase [Lactococcus lactis subsp. lactis] sp|Q9CG78|XERC_LACLA Tyrosine recombinase xerC pir||H86778 integrase-recombinase [imported] - Lactococcus lactis subsp. lactis (strain IL1403) gb|AAK05330.1| integrase-recombinase [Lactococcus lactis subsp. lactis] Length = 356 Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 55/139 (39%), Positives = 85/139 (61%), Gaps = 8/139 (5%) Query: 13 GNKKLTINRKLSSLKSLFDYLQNKAETSDLKPYIQRNVMAKMDLNAVKESQETIANR--- 69 G + TINR LS+L SL+ YL + E D +PY RNVM K+ K+ ET+A+R Sbjct: 100 GVSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQ---TKKKSETLASRAEN 156 Query: 70 IEGKILREDDFELFRQFVAYDFGEKYKDNKRIYTFHQFNRERDTAIVSLILGSGLRLSEV 129 I+GK+ D+ + F ++ ++ EK N+ +F + N+ERD AI++LIL SG+RLSE Sbjct: 157 IKGKLFLGDETQGFLDYIDNEY-EKTLSNRARSSFFK-NKERDLAIIALILASGIRLSEA 214 Query: 130 AGINMDDLDMNKALVRVIR 148 +++ DL++ +V V R Sbjct: 215 VNVDLRDLNLITMVVEVTR 233 >ref|NP_687989.1| site-specific recombinase, phage integrase family [Streptococcus agalactiae 2603V/R] ref|NP_735413.1| Unknown [Streptococcus agalactiae NEM316] sp|Q7ZAL3|XERC_STRA3 Tyrosine recombinase xerC gb|AAM99861.1| site-specific recombinase, phage integrase family [Streptococcus agalactiae 2603V/R] emb|CAD46624.1| Unknown [Streptococcus agalactiae NEM316] Length = 356 Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 51/138 (36%), Positives = 82/138 (59%), Gaps = 2/138 (1%) Query: 11 QLGNKKLTINRKLSSLKSLFDYLQNKAETSDLKPYIQRNVMAKMDLNAVKESQETIANRI 70 Q G + TINR LS+L SLF YL + E +D +PY RNVM K+ KE+ + A I Sbjct: 98 QNGVSQTTINRTLSALSSLFKYLTEEVENADGEPYFYRNVMKKVSTKKKKETLASRAENI 157 Query: 71 EGKILREDDFELFRQFVAYDFGEKYKDNKRIYTFHQFNRERDTAIVSLILGSGLRLSEVA 130 + K+ ++ F +++ ++ K +KR F N+ERD AI++L+L SG+RLSE Sbjct: 158 KQKLFLGNETIEFLEYIDCEYQNKL--SKRALAFFNKNKERDLAIIALLLASGVRLSEAV 215 Query: 131 GINMDDLDMNKALVRVIR 148 +++ D+++N ++ V R Sbjct: 216 NLDLKDINLNVMVIDVTR 233 >ref|NP_721427.1| putative integrase/recombinase; XerC-like [Streptococcus mutans UA159] sp|O69155|XERC_STRMU Tyrosine recombinase xerC gb|AAN58733.1| putative integrase/recombinase; XerC-like [Streptococcus mutans UA159] Length = 356 Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/136 (36%), Positives = 82/136 (60%), Gaps = 2/136 (1%) Query: 13 GNKKLTINRKLSSLKSLFDYLQNKAETSDLKPYIQRNVMAKMDLNAVKESQETIANRIEG 72 G + TINR LS+L SL+ YL + E +D +PY RNVM K+ KE+ A I+ Sbjct: 100 GVSQTTINRTLSALSSLYKYLTEEVENADGEPYFYRNVMKKVSTKKKKETLAARAENIKQ 159 Query: 73 KILREDDFELFRQFVAYDFGEKYKDNKRIYTFHQFNRERDTAIVSLILGSGLRLSEVAGI 132 K+ ++ F ++V D ++K +KR + + N+ERD AI++L+L SG+RLSE + Sbjct: 160 KLFLGNETMEFLEYV--DCEYEHKLSKRALSSFRKNKERDLAIIALLLASGVRLSEAVNL 217 Query: 133 NMDDLDMNKALVRVIR 148 ++ D+++N ++ V R Sbjct: 218 DLKDVNLNMMIIEVTR 233 >gb|AAC17173.1| unknown [Streptococcus mutans] Length = 356 Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/136 (36%), Positives = 82/136 (60%), Gaps = 2/136 (1%) Query: 13 GNKKLTINRKLSSLKSLFDYLQNKAETSDLKPYIQRNVMAKMDLNAVKESQETIANRIEG 72 G + TINR LS+L SL+ YL + E +D +PY RNVM K+ KE+ A I+ Sbjct: 100 GVSQTTINRTLSALSSLYKYLTEEVENADGEPYFYRNVMKKVSTKKKKETLAARAENIKQ 159 Query: 73 KILREDDFELFRQFVAYDFGEKYKDNKRIYTFHQFNRERDTAIVSLILGSGLRLSEVAGI 132 K+ ++ F ++V ++ +K +KR + + N+ERD AI++L+L SG+RLSE + Sbjct: 160 KLFLGNETMEFLEYVDCEYEQKL--SKRALSSFRKNKERDLAIIALLLASGVRLSEAVNL 217 Query: 133 NMDDLDMNKALVRVIR 148 ++ D+++N ++ V R Sbjct: 218 DLKDVNLNMMIIEVTR 233 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.137 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 229,021,858 Number of extensions: 8566580 Number of successful extensions: 25965 Number of sequences better than 1.0e-05: 18 Number of HSP's gapped: 25951 Number of HSP's successfully gapped: 18 Length of query: 184 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 66 Effective length of database: 436,855,896 Effective search space: 28832489136 Effective search space used: 28832489136 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 122 (51.6 bits)