BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0596.0029.p (312 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242778.1| transmembrane lipoprotein [Bacillus halodurans]... 387 e-106 pir||S72642 probable ABC-type transport protein xynB - Thermoana... 287 2e-76 ref|NP_242979.1| ABC transporter (permease) [Bacillus halodurans... 287 2e-76 dbj|BAA82142.1| ORF2 [Clostridium stercorarium] 228 1e-58 ref|NP_764660.1| maltose/maltodextrin transport permease [Staphy... 217 3e-55 >ref|NP_242778.1| transmembrane lipoprotein [Bacillus halodurans] pir||H83888 transmembrane lipoprotein lplC [imported] - Bacillus halodurans (strain C-125) dbj|BAB05631.1| transmembrane lipoprotein [Bacillus halodurans] Length = 297 Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust. Identities = 180/291 (61%), Positives = 237/291 (81%), Gaps = 2/291 (0%) Query: 24 DRILEIIVYFSMTVVTVLTIYPFLNVLAISLNDSVDTVRGGITVWPRQFTLDNYSLIFTY 83 DR+ + Y +T+V ++T+YPFLNVLAISLNDSVDTVRGGI +WPR+FTL+NY +IF Y Sbjct: 7 DRLFDWCNYLFLTMVLLVTLYPFLNVLAISLNDSVDTVRGGIYIWPREFTLENYRVIFEY 66 Query: 84 GSLITGFKISFLRTVIGTIAGLVSGSMLAYTLARSDFQARRFISIFLAVTMYVTGGLIPG 143 L+TGF S LRTVIGT+ G+ S +M+A+TL+R DFQAR+F+S + +T+Y +GGLIPG Sbjct: 67 DHLVTGFINSVLRTVIGTVLGVFSSAMVAFTLSRGDFQARKFVSTIIVLTLYFSGGLIPG 126 Query: 144 FILMKDLHLIDTFAVYILPGLVSAFNVFVIRSFIDGLPYALQESAKLDGANDFTIYWRVI 203 ++L+++L+LI+TF VY+LPG+V+AF++ ++RSF+DGLPY+LQESAK+DGANDFTI+WR+I Sbjct: 127 YMLIRELNLINTFWVYVLPGMVNAFHIIIVRSFMDGLPYSLQESAKIDGANDFTIFWRII 186 Query: 204 LPLCKPALATVALFLAVGQWNSWFDTYLFNGSNESLTTLQYELMKILQSTTTSAS--NSQ 261 LPLC P LAT+ALF+AVGQWN+WFDTYL+N SN +LTTLQYELMKILQ+TT SAS N+ Sbjct: 187 LPLCTPVLATIALFVAVGQWNAWFDTYLYNSSNPNLTTLQYELMKILQNTTMSASDANAF 246 Query: 262 DAANMAERMSQISPESVKMAXXXXXXXXXXXXYPFLQKYFVKGMTLGAVKS 312 + + +SPES+KMA YPF+Q++FVKGMTLGAVKS Sbjct: 247 RGTSGEDHSRTVSPESIKMAISMITIIPILLVYPFVQRFFVKGMTLGAVKS 297 >pir||S72642 probable ABC-type transport protein xynB - Thermoanaerobacterium thermosulfurigenes gb|AAB08045.1| XynB [Thermoanaerobacterium thermosulfurigenes] Length = 301 Score = 287 bits (735), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 139/299 (46%), Positives = 202/299 (67%) Query: 13 AKQSLQAKAPQDRILEIIVYFSMTVVTVLTIYPFLNVLAISLNDSVDTVRGGITVWPRQF 72 AK + + +D + + I Y +T+V ++T+YPF++VLA+S ND++DTVRGGI ++PR+F Sbjct: 2 AKNNRIRLSTEDIVFDTINYILLTIVIIVTLYPFVHVLAVSFNDAIDTVRGGIYLFPRKF 61 Query: 73 TLDNYSLIFTYGSLITGFKISFLRTVIGTIAGLVSGSMLAYTLARSDFQARRFISIFLAV 132 T NY I + + IS LR VIG++ +++ ++AY ++R DF R +S Sbjct: 62 TTFNYVSILSDPEIYNATIISALRAVIGSVLNVIASIIVAYAISRRDFVLRGIVSKIFTY 121 Query: 133 TMYVTGGLIPGFILMKDLHLIDTFAVYILPGLVSAFNVFVIRSFIDGLPYALQESAKLDG 192 +MY T GLIP ++L++DLHL++ F VYILPG+VSA+N+ V+RS+IDGLP +L ESAK+DG Sbjct: 122 SMYFTSGLIPYYLLIRDLHLMNNFLVYILPGIVSAWNIMVVRSYIDGLPASLVESAKIDG 181 Query: 193 ANDFTIYWRVILPLCKPALATVALFLAVGQWNSWFDTYLFNGSNESLTTLQYELMKILQS 252 A++ I + +I PL P LAT+ LF+AVGQWNSWFDT LF N +L+TLQYEL K+LQS Sbjct: 182 ASELRIIFSIIFPLSVPVLATITLFVAVGQWNSWFDTMLFCSMNPNLSTLQYELQKVLQS 241 Query: 253 TTTSASNSQDAANMAERMSQISPESVKMAXXXXXXXXXXXXYPFLQKYFVKGMTLGAVK 311 T + + + ++PES++ A YPFLQKYFVKG+T+G+VK Sbjct: 242 TQQFTQQASFDMGLRNNSNSVTPESIRAAMTVVAVVPIMMVYPFLQKYFVKGLTIGSVK 300 >ref|NP_242979.1| ABC transporter (permease) [Bacillus halodurans] pir||A83914 ABC transporter (permease) BH2113 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05832.1| ABC transporter (permease) [Bacillus halodurans] Length = 308 Score = 287 bits (735), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 144/303 (47%), Positives = 206/303 (67%), Gaps = 4/303 (1%) Query: 13 AKQSLQAKAPQDRILEIIVYFSMTVVTVLTIYPFLNVLAISLNDSVDTVRGGITVWPRQF 72 AK + + + D I + + M ++ V+ +YP +N LA+SLND+ DTVRGGI WPR+F Sbjct: 5 AKLAGKRRGADDFIFDSLNIIFMLLLCVVMLYPMVNTLAVSLNDATDTVRGGIYFWPREF 64 Query: 73 TLDNYSLIFTYGSLITGFKISFLRTVIGTIAGLVSGSMLAYTLARSDFQARRFISIFLAV 132 T N+ +F+ L+ IS LRTVIGT + +M+AYT++R F ++F++I + Sbjct: 65 TWYNFEHVFSQSQLLHAGMISVLRTVIGTAISVFCTAMVAYTISRKQFVLKKFVTIAFVL 124 Query: 133 TMYVTGGLIPGFILMKDLHLIDTFAVYILPGLVSAFNVFVIRSFIDGLPYALQESAKLDG 192 TMY+ GGLIP ++LM++L LI TF +YI+PGL+ FN+ VIRSFI+GLP + ESAK+DG Sbjct: 125 TMYLNGGLIPTYLLMRELSLIGTFWIYIIPGLIGVFNLIVIRSFIEGLPETIFESAKIDG 184 Query: 193 ANDFTIYWRVILPLCKPALATVALFLAVGQWNSWFDTYLFNGSNESLTTLQYELMKILQS 252 A +FT ++++ LPLC P +ATV+LF+AVGQWNSWFD +++N + L+TLQYELMKILQ+ Sbjct: 185 AGEFTQFFKIALPLCLPVIATVSLFVAVGQWNSWFDVFIYNSNKPELSTLQYELMKILQN 244 Query: 253 TTTSASNSQDAANMAER----MSQISPESVKMAXXXXXXXXXXXXYPFLQKYFVKGMTLG 308 + S S+ A+ A + ++P+SV+ A YPFLQKYFVKG+TLG Sbjct: 245 SNASMSSGSAASAFASSQSGVVETVTPQSVRAAMTIIVSVPIICVYPFLQKYFVKGLTLG 304 Query: 309 AVK 311 VK Sbjct: 305 GVK 307 >dbj|BAA82142.1| ORF2 [Clostridium stercorarium] Length = 254 Score = 228 bits (582), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 110/252 (43%), Positives = 163/252 (64%), Gaps = 9/252 (3%) Query: 70 RQFTLDNYSLIFTYGSLITGFKISFLRTVIGTIAGLVSGSMLAYTLARSDFQARRFISIF 129 + TL NY ++F ++ F IS +T++ + L SMLAYT++R ++ R+FI+ Sbjct: 3 EKITLYNYYVVFNMDTIYNAFYISVTKTIVIVVTNLFFTSMLAYTISRKEYIFRKFITTV 62 Query: 130 LAVTMYVTGGLIPGFILMKDLHLIDTFAVYILPGLVSAFNVFVIRSFIDGLPYALQESAK 189 +TMY GLIP ++L+K L L++TF+VY +P +VSAFN+ V+R++I +P +L ESAK Sbjct: 63 FVLTMYFNAGLIPNYLLIKKLGLLNTFSVYWIPNIVSAFNLIVMRTYIKTIPESLIESAK 122 Query: 190 LDGANDFTIYWRVILPLCKPALATVALFLAVGQWNSWFDTYLFNGSNESLTTLQYELMKI 249 +DGA +F IYWR++LPL P LAT+ALF+AVG WNSWFDT+L+N + + L+TLQYEL K+ Sbjct: 123 IDGAREFHIYWRIVLPLITPCLATIALFVAVGSWNSWFDTFLYNSARQDLSTLQYELQKL 182 Query: 250 LQSTTTSASNSQDAA-NMAERMSQ--------ISPESVKMAXXXXXXXXXXXXYPFLQKY 300 L ST T+ + A N A R +P+S++ A YPFLQ+Y Sbjct: 183 LSSTMTAGTRGAPAGINEAGRAGTSGTGSGNVTTPQSIRAAITIFTSVPILLVYPFLQRY 242 Query: 301 FVKGMTLGAVKS 312 F+ G+ +G+VK Sbjct: 243 FIHGLAIGSVKE 254 >ref|NP_764660.1| maltose/maltodextrin transport permease [Staphylococcus epidermidis ATCC 12228] gb|AAO04702.1| maltose/maltodextrin transport permease [Staphylococcus epidermidis ATCC 12228] Length = 302 Score = 217 bits (552), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 105/270 (38%), Positives = 167/270 (61%), Gaps = 3/270 (1%) Query: 45 PFLNVLAISLNDSVDTVRGGITVWPRQFTLDNYSLIFTYGSLITGFKISFLRTVIGTIAG 104 P +N+ A++ N VD +GGIT +PR+F+LDN+ IF G+L+ IS +TVIGTI Sbjct: 34 PMINIFALAFNSGVDAQKGGITFYPRKFSLDNFKEIFKQGTLLNALFISIAKTVIGTILS 93 Query: 105 LVSGSMLAYTLARSDFQARRFISIFLAVTMYVTGGLIPGFILMKDLHLIDTFAVYILPGL 164 ++ +M AY L RR IS FL TM + G++P +IL+ LHL DTF VYILP L Sbjct: 94 VILTAMAAYVLTIKSLPFRRIISFFLVFTMLFSVGVVPLYILLNQLHLTDTFWVYILPSL 153 Query: 165 VSAFNVFVIRSFIDGLPYALQESAKLDGANDFTIYWRVILPLCKPALATVALFLAVGQWN 224 S +N+ ++R+F + LP ++ E+A++DG NDF I+W+++LP+ KP +A++ LF AV QWN Sbjct: 154 YSVYNILIMRTFFNQLPSSVIEAARVDGCNDFQIFWKIVLPMSKPVVASITLFNAVSQWN 213 Query: 225 SWFDTYLF--NGSNESLTTLQYELMKILQSTTTSASNSQDAANMAERMSQISPESVKMAX 282 WF F N + + L T+ +++ + + + M ++++ I+ +S++MA Sbjct: 214 DWFTGAFFVRNPNLKPLATVLQDMLTKQAAIADALKQKSGSYAMLDKLT-ITGDSMQMAM 272 Query: 283 XXXXXXXXXXXYPFLQKYFVKGMTLGAVKS 312 +PF+QK+FVKG+T+G+ K Sbjct: 273 IVLLTIPVLFLFPFVQKHFVKGITIGSTKE 302 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.325 0.138 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 388,454,496 Number of extensions: 14567665 Number of successful extensions: 54744 Number of sequences better than 1.0e-05: 1138 Number of HSP's gapped: 53877 Number of HSP's successfully gapped: 1139 Length of query: 312 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 187 Effective length of database: 417,850,203 Effective search space: 78137987961 Effective search space used: 78137987961 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 126 (53.1 bits)