BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0596.0028.p (344 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242777.1| transmembrane lipoprotein [Bacillus halodurans]... 472 e-132 ref|NP_242978.1| transmembrane lipoprotein [Bacillus halodurans]... 332 8e-90 ref|NP_241931.1| BH1065~unknown conserved protein [Bacillus halo... 261 2e-68 ref|NP_241350.1| transmembrane lipoprotein [Bacillus halodurans]... 260 3e-68 ref|NP_822631.1| putative multiple sugar transport system permea... 252 1e-65 >ref|NP_242777.1| transmembrane lipoprotein [Bacillus halodurans] pir||G83888 transmembrane lipoprotein lplB [imported] - Bacillus halodurans (strain C-125) dbj|BAB05630.1| transmembrane lipoprotein [Bacillus halodurans] Length = 319 Score = 472 bits (1214), Expect = e-132, Method: Compositional matrix adjust. Identities = 220/319 (68%), Positives = 264/319 (82%), Gaps = 1/319 (0%) Query: 27 MKTITASAENAYK-KRKKSAWKELKNQKYLYYMSIPFVLWVFVFQYLPLWGWTMAFQKYK 85 M+T+ A + + +R+K LK QKYLY MS+PFV WV VF Y PLWGWTMAFQ ++ Sbjct: 1 METVKEKAHSKIRVQRRKKILTTLKQQKYLYLMSLPFVAWVLVFNYFPLWGWTMAFQNFR 60 Query: 86 PGVGFFEQKWVGFEHFRTLFGDEHFYQVLRNTLAMSFMGLIAGFIVPVVFALLLNEVRVQ 145 PG+ FFEQ+WVG +HF LF D FY VLRNTLAMS MGLI GF +P++FA+LLNEVR Sbjct: 61 PGLSFFEQEWVGLQHFIELFQDNRFYLVLRNTLAMSIMGLIVGFTMPILFAVLLNEVRHM 120 Query: 146 ALKRFVQTVSYLPHFVSWVVAAGIVTKMLSTDGGVVNDILLGLNLIDQPIQFMAQGHLFW 205 KR VQTVSYLPHFVSWVV AGIVTKMLS DGG+VN +L+ +DQP+QFMA+G FW Sbjct: 121 VFKRTVQTVSYLPHFVSWVVVAGIVTKMLSIDGGIVNQLLMAFGFVDQPVQFMAKGEWFW 180 Query: 206 GVVTSADIWKETGWNAIIYLAAISGIGPELYEAARVDGASRWRQIWHITLPGIRPTMIVL 265 +VT +D+WKE GWN+II+LAA++GI P+LYEAA+VDGASRWRQIWHITLPGIRPT++V+ Sbjct: 181 VIVTLSDLWKEMGWNSIIFLAAMAGIDPQLYEAAKVDGASRWRQIWHITLPGIRPTILVI 240 Query: 266 LIMSIGHLLGTGFEKQFLLGNHLVIDYSEVLDLYALNYGLAMGRYSFGTAINIFNSVISL 325 LI+SIGHL+ GFEKQFLLGN LV+DYSEVLDLYALNYGL +GRYS+GTAI IFNSV+ + Sbjct: 241 LILSIGHLMAIGFEKQFLLGNPLVVDYSEVLDLYALNYGLGLGRYSYGTAIGIFNSVVCI 300 Query: 326 VLLFAANGIFKRFTNESIM 344 +LLF ANGIFKRFTN+S+M Sbjct: 301 ILLFLANGIFKRFTNQSVM 319 >ref|NP_242978.1| transmembrane lipoprotein [Bacillus halodurans] pir||H83913 transmembrane lipoprotein BH2112 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05831.1| transmembrane lipoprotein [Bacillus halodurans] Length = 337 Score = 332 bits (851), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 147/292 (50%), Positives = 218/292 (74%) Query: 46 WKELKNQKYLYYMSIPFVLWVFVFQYLPLWGWTMAFQKYKPGVGFFEQKWVGFEHFRTLF 105 +K+ QK L MS+PF++W+ +F+Y+PL+GW++AFQ ++P F+Q W GF+HF LF Sbjct: 39 FKKCYEQKALLLMSLPFLIWLIIFRYVPLYGWSIAFQDFRPARPIFDQDWAGFKHFTFLF 98 Query: 106 GDEHFYQVLRNTLAMSFMGLIAGFIVPVVFALLLNEVRVQALKRFVQTVSYLPHFVSWVV 165 D F++VLRNTLAMS + L+ GF+ + A+LLNE+R KR VQT+SY+PHF+SWVV Sbjct: 99 TDPRFFEVLRNTLAMSLINLVLGFVTAIGLAILLNELRNLTFKRVVQTISYMPHFLSWVV 158 Query: 166 AAGIVTKMLSTDGGVVNDILLGLNLIDQPIQFMAQGHLFWGVVTSADIWKETGWNAIIYL 225 AAG+V+ LS + G++N +L+ L +I +PI ++ G FWG++ ++D+WK GWN IIYL Sbjct: 159 AAGLVSAALSIENGIINIVLMKLGMISEPIMWLGVGEYFWGIIGASDVWKNVGWNTIIYL 218 Query: 226 AAISGIGPELYEAARVDGASRWRQIWHITLPGIRPTMIVLLIMSIGHLLGTGFEKQFLLG 285 AAI+ I E YEAA +DGA+R ++IW+ITLPG+RP +++LLIM++G++L +GFE Q+LL Sbjct: 219 AAITMIDTEQYEAAEIDGATRLQRIWYITLPGMRPVIVILLIMNLGYILESGFEAQYLLM 278 Query: 286 NHLVIDYSEVLDLYALNYGLAMGRYSFGTAINIFNSVISLVLLFAANGIFKR 337 N + +D++E LD++ L YG+ MG +S TA IF +V+S + LF+AN I KR Sbjct: 279 NPMNMDFAENLDIFVLRYGINMGNFSLATAAGIFKTVVSFIFLFSANHIAKR 330 >ref|NP_241931.1| BH1065~unknown conserved protein [Bacillus halodurans] pir||A83783 hypothetical protein BH1065 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04784.1| BH1065~unknown conserved protein [Bacillus halodurans] Length = 317 Score = 261 bits (667), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 138/316 (43%), Positives = 204/316 (64%), Gaps = 3/316 (0%) Query: 28 KTITASAENAYKKRKKSAWKELKNQKYLYYMSIPFVLWVFVFQYLPLWGWTMAFQKYKPG 87 + +T++A+ +K KK W + L+ + IP ++ +FQY P++G MAFQ YKP Sbjct: 4 QAVTSNAKTVERKLKKQKW-NFRRTWQLHVLLIPALVLALIFQYGPMFGIVMAFQDYKPW 62 Query: 88 VGFFEQKWVGFEHFRTLFGDEHFYQVLRNTLAMSFMGLIAGFIVPVVFALLLNEVRVQAL 147 +GF +WVG +HF T+F ++ QV+ NTL +S + +I G IVP++ ALLLNE+ + Sbjct: 63 LGFTGSEWVGLQHFITMFEYDYAKQVIWNTLVISVLKMIFGLIVPIIVALLLNEMYQMVV 122 Query: 148 KRFVQTVSYLPHFVSWVVAAGIVTKMLSTDGGVVNDILLGLNLIDQPIQFMAQGHLFWGV 207 KR VQT+ YLP+F+SWV+ GI+ +LS DGG+VN L GL ID PI F+ F Sbjct: 123 KRTVQTIIYLPYFLSWVILGGILIDVLSPDGGIVNQAL-GLFGID-PIFFLGSNDWFRTT 180 Query: 208 VTSADIWKETGWNAIIYLAAISGIGPELYEAARVDGASRWRQIWHITLPGIRPTMIVLLI 267 V +D+WKETG+N I++LAAI+ + P LYEAA VDGA+RW+Q HITLP + P +IV+ Sbjct: 181 VVISDLWKETGFNTIVFLAAITAVNPNLYEAAVVDGANRWKQTLHITLPAMLPIIIVVAT 240 Query: 268 MSIGHLLGTGFEKQFLLGNHLVIDYSEVLDLYALNYGLAMGRYSFGTAINIFNSVISLVL 327 +S+G++L GF++ F L N LV +++D Y L G +S+GTA+ +F S+ISLVL Sbjct: 241 LSLGNILNAGFDQIFNLYNPLVYQTGDIIDTYVYRVSLVNGDFSYGTAVGLFKSLISLVL 300 Query: 328 LFAANGIFKRFTNESI 343 + + ++ N I Sbjct: 301 IIIGYRLAYKYANWRI 316 >ref|NP_241350.1| transmembrane lipoprotein [Bacillus halodurans] pir||D83710 transmembrane lipoprotein BH0484 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04203.1| transmembrane lipoprotein [Bacillus halodurans] Length = 325 Score = 260 bits (665), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 134/315 (42%), Positives = 204/315 (64%), Gaps = 3/315 (0%) Query: 30 ITASAENAYKK-RKKSAWKELKNQKYLYYMSIPFVLWVFVFQYLPLWGWTMAFQKYKPGV 88 I ++A + KK R++ K + KYLY M +P +++ +F+Y+P+WG +AFQ Y+P + Sbjct: 12 IESAAPSIPKKVRRQQKLKRIFRNKYLYLMILPGLVYFLIFKYVPMWGLIIAFQDYQPFL 71 Query: 89 GFFEQKWVGFEHFRTLFGDEHFYQVLRNTLAMSFMGLIAGFIVPVVFALLLNEVRVQALK 148 G +WVGF+HF LF + F+Q+LRNTL + LI F VP++ A+LLNE+R+ K Sbjct: 72 GVTGSEWVGFKHFERLFTEPTFFQLLRNTLVLFLYNLIFFFPVPIILAVLLNEIRLMVFK 131 Query: 149 RFVQTVSYLPHFVSWVVAAGIVTKMLSTDGGVVNDILLGLNLIDQPIQFMAQGHLFWGVV 208 RFVQT+ Y+PHF+SWV+ + + +TDGGV+N+I+ + + + F+ F + Sbjct: 132 RFVQTMIYIPHFMSWVIVVSLTYVLFTTDGGVINEIIYSIT--GKNVNFLMSEDWFRPLY 189 Query: 209 TSADIWKETGWNAIIYLAAISGIGPELYEAARVDGASRWRQIWHITLPGIRPTMIVLLIM 268 IW+E GW IIY AAI+ I P LYEAA++DGA+R+RQIWHITLP IR ++VLLI+ Sbjct: 190 ILQVIWREAGWATIIYFAAIAAIDPSLYEAAKMDGANRFRQIWHITLPAIRSVIVVLLIL 249 Query: 269 SIGHLLGTGFEKQFLLGNHLVIDYSEVLDLYALNYGLAMGRYSFGTAINIFNSVISLVLL 328 IG +L GFE FL+ N + + +E+ D Y GL G++S+ TA+ F S++ L+++ Sbjct: 250 KIGDILELGFEHVFLMLNAMNREVAEIFDTYVYTAGLKEGQFSYSTAVGFFKSIVGLIMV 309 Query: 329 FAANGIFKRFTNESI 343 AN + K+F E + Sbjct: 310 MLANWLAKKFGEEGV 324 >ref|NP_822631.1| putative multiple sugar transport system permease protein [Streptomyces avermitilis MA-4680] dbj|BAC69166.1| putative multiple sugar transport system permease protein [Streptomyces avermitilis MA-4680] Length = 332 Score = 252 bits (643), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 125/274 (45%), Positives = 178/274 (64%), Gaps = 3/274 (1%) Query: 70 QYLPLWGWTMAFQKYKPGVGFFEQKWVGFEHFRTLFGDEHFYQVLRNTLAMSFMGLIAGF 129 +YLP+ G +AF++++PG ++WVG + R D F+QV NT+ + + L+ F Sbjct: 61 RYLPMIGNAIAFRRFEPGGSMLGERWVGLRYVRMFLTDPTFWQVFTNTMWLGALTLVFCF 120 Query: 130 IVPVVFALLLNEVRVQALKRFVQTVSYLPHFVSWVVAAGIVTKMLSTDGGVVNDILLGLN 189 VP+V ALLLNEVR +ALKRFVQ+VSYLPHF+S V+ AG+ +ML+TDG V N L Sbjct: 121 PVPIVLALLLNEVRTRALKRFVQSVSYLPHFLSIVIVAGVTMQMLATDGPV-NHALKAFG 179 Query: 190 LIDQPIQFMAQGHLFWGVVTSADIWKETGWNAIIYLAAISGIGPELYEAARVDGASRWRQ 249 P++F+ + F V ++IW+ GW I+YLAA++ I +LYEAAR+DGA RW+Q Sbjct: 180 --QAPVRFLQEPDWFRAVYVGSEIWQTAGWGTILYLAALTTIDEDLYEAARIDGAGRWKQ 237 Query: 250 IWHITLPGIRPTMIVLLIMSIGHLLGTGFEKQFLLGNHLVIDYSEVLDLYALNYGLAMGR 309 IWH+ LPGIRPTMI LLI++IG + GFEK LL N L ++V+ Y G+ Sbjct: 238 IWHVALPGIRPTMITLLILNIGTFMAVGFEKVLLLYNPLTYPTADVISTYLYRTGVESNS 297 Query: 310 YSFGTAINIFNSVISLVLLFAANGIFKRFTNESI 343 +S+ AI +F +VI LVL+F+AN + +R S+ Sbjct: 298 FSYAAAIGLFEAVIGLVLIFSANQLSRRTVGTSL 331 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.327 0.142 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 525,487,196 Number of extensions: 21873604 Number of successful extensions: 75982 Number of sequences better than 1.0e-05: 1001 Number of HSP's gapped: 75525 Number of HSP's successfully gapped: 1001 Length of query: 344 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 218 Effective length of database: 415,135,104 Effective search space: 90499452672 Effective search space used: 90499452672 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 126 (53.1 bits)