BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0596.0015.p (319 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_622453.1| ABC-type sugar transport systems, permease comp... 199 6e-50 ref|NP_486572.1| sugar ABC transport system, permease protein [N... 194 3e-48 ref|ZP_00110984.1| COG1175: ABC-type sugar transport systems, pe... 187 3e-46 ref|NP_244556.1| sugar transport system (permease) [Bacillus hal... 176 6e-43 ref|NP_682335.1| ABC transporter sugar permease protein [Thermos... 172 8e-42 >ref|NP_622453.1| ABC-type sugar transport systems, permease components [Thermoanaerobacter tengcongensis] gb|AAM24057.1| ABC-type sugar transport systems, permease components [Thermoanaerobacter tengcongensis] Length = 306 Score = 199 bits (507), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 111/301 (36%), Positives = 176/301 (58%), Gaps = 8/301 (2%) Query: 23 QIGLRLASSSKFV-----GYLFVAPILIFMGIWFYYPLLRSFVYSFQDISFLNPDAATFI 77 ++ R++ K++ GY+FV P + + I+ PL+ +F+ SF++ SFLNP A+ ++ Sbjct: 7 KVEARISLKRKYIYEALTGYIFVLPFIASISIFLIGPLIYAFIISFKEFSFLNPAASKWV 66 Query: 78 GLQNYTEMLKDGDFWGALKNSAIITVIAVPLQSVIALLIAVGLNKITRLKTTFRTLFYLP 137 GL NY + D F AL N+ + ++ VP Q +IAL++A+ +N + KT FR +Y+P Sbjct: 67 GLANYINLFSDPTFKKALLNTTLYSLGVVPTQLIIALILALIVNSDIKGKTFFRVAYYIP 126 Query: 138 YITSTVAVTTVFMYLFMQQDGIATKFFTLFGMEDVSWYASTKYALPFLILITVWTYIGFY 197 ITS VAV+ +F+YLF + DG+ FG++ +W+ ++ALP ++++ VW+ +G Y Sbjct: 127 TITSMVAVSVIFLYLF-KTDGLVNMILAKFGIQGPTWFNDVRFALPSIMMMAVWSSVGNY 185 Query: 198 VVVYLGGLQNIPYDIYESGMVDGANAWQRLRYITIPMLKPTTFLVLTSGLIYALQLFDQP 257 +V++L GLQ+IP ++YE+ VDGAN Q+ IT+PML+P F L LI Q+FDQ Sbjct: 186 MVIFLAGLQDIPAELYEAAEVDGANKLQKFFNITLPMLRPVVFFNLVISLIGTFQVFDQA 245 Query: 258 YALARNGSLGSPAGATSTIVIYFYSQAFSFNRAGYGSXXXXXXXXXXXXXXXXQKRFVKE 317 Y ++R G P AT T+V+Y Y F GY S Q+ F KE Sbjct: 246 YVVSRGT--GGPLDATMTMVLYIYRTGFRDFNMGYASAMAFVLFVIILILTLIQRMFFKE 303 Query: 318 D 318 + Sbjct: 304 E 304 >ref|NP_486572.1| sugar ABC transport system, permease protein [Nostoc sp. PCC 7120] pir||AE2122 sugar ABC transport system, permease protein alr2532 [imported] - Nostoc sp. (strain PCC 7120) dbj|BAB74231.1| sugar ABC transport system, permease protein [Nostoc sp. PCC 7120] Length = 301 Score = 194 bits (492), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 105/287 (36%), Positives = 158/287 (55%), Gaps = 3/287 (1%) Query: 27 RLASSSKFVGYLFVAPILIFMGIWFYYPLLRSFVYSFQDISFLNPDAATFIGLQNYTEML 86 R + GY+F+ P L+ +G + P+L S S + L A FIGL+N+ ++ Sbjct: 13 RWNITDSLFGYVFMMPTLLVLGTFVVLPILYSVFLSLNKVQLLGGVAYQFIGLRNFQRLV 72 Query: 87 KDGDFWGALKNSAIITVIAVPLQSVIALLIAVGLNKITRLKTTFRTLFYLPYITSTVAVT 146 D W AL+N+A VI VP Q+V+AL++AV LN R K +R L++LP +TS+ +T Sbjct: 73 DDELVWIALRNTAEYVVIVVPSQTVLALILAVTLNAGIRGKNWWRILYFLPTVTSSAVLT 132 Query: 147 TVFMYLFMQQDGIATKFFTLFGMEDVSWYASTKYALPFLILITVWTYIGFYVVVYLGGLQ 206 +FM+++ DG+ F G+ +W AL ++L+ +W+ FY+V+YL LQ Sbjct: 133 LIFMWIY-NTDGLLNDFLAFLGLPTYNWLGDPAVALKGIMLMNIWSTAPFYMVIYLAALQ 191 Query: 207 NIPYDIYESGMVDGANAWQRLRYITIPMLKPTTFLVLTSGLIYALQLFDQPYALARNGSL 266 +IP +YE+ +DGAN WQ+ YITIP+LKP TF V+ G+I QLFDQ Y + G Sbjct: 192 DIPAKLYEAAELDGANWWQQFIYITIPLLKPVTFFVIAVGVIGTFQLFDQSYIFS--GGT 249 Query: 267 GSPAGATSTIVIYFYSQAFSFNRAGYGSXXXXXXXXXXXXXXXXQKR 313 G P AT T+V+ Y F + + GY + Q+R Sbjct: 250 GGPNNATLTVVLLIYQMVFRYLQMGYAAAIAFLLAVVIIGITLIQRR 296 >ref|ZP_00110984.1| COG1175: ABC-type sugar transport systems, permease components [Nostoc punctiforme] Length = 302 Score = 187 bits (475), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 97/266 (36%), Positives = 153/266 (57%), Gaps = 3/266 (1%) Query: 27 RLASSSKFVGYLFVAPILIFMGIWFYYPLLRSFVYSFQDISFLNPDAATFIGLQNYTEML 86 R + GY+F+ P ++ +G + P+L + S Q + L FIG +N+T + Sbjct: 12 RWNITENLAGYMFMMPTILVLGTFVVLPILYAVFLSLQKVRLLGGIEYEFIGFRNFTRLA 71 Query: 87 KDGDFWGALKNSAIITVIAVPLQSVIALLIAVGLNKITRLKTTFRTLFYLPYITSTVAVT 146 +D W AL+N+A I VP Q+V+AL++AV LN R K +R L++LP +TS+ +T Sbjct: 72 EDERVWIALRNTAQYVAIVVPTQTVLALILAVTLNSGIRGKNWWRILYFLPTVTSSAVLT 131 Query: 147 TVFMYLFMQQDGIATKFFTLFGMEDVSWYASTKYALPFLILITVWTYIGFYVVVYLGGLQ 206 +FM+++ DG+ F T G+ +W AL +I++ +W+ F++V+YL LQ Sbjct: 132 LIFMWIY-NTDGLLNDFLTFVGLPTYNWLGDPSVALKGIIIMNIWSTAPFFMVIYLAALQ 190 Query: 207 NIPYDIYESGMVDGANAWQRLRYITIPMLKPTTFLVLTSGLIYALQLFDQPYALARNGSL 266 +IP +YE+ +DGAN W++ +IT+P+LKP TF V+ G+I QLFDQ Y + G Sbjct: 191 DIPKTLYEAAELDGANGWKQFIHITLPLLKPVTFFVVAVGVIGTFQLFDQSYIFS--GGT 248 Query: 267 GSPAGATSTIVIYFYSQAFSFNRAGY 292 G P AT T+V+ Y F + GY Sbjct: 249 GGPNNATLTVVLLIYQAVFRNLQMGY 274 >ref|NP_244556.1| sugar transport system (permease) [Bacillus halodurans] pir||A84111 sugar transport system (permease) BH3689 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07408.1| sugar transport system (permease) [Bacillus halodurans] Length = 300 Score = 176 bits (446), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 97/298 (32%), Positives = 160/298 (53%), Gaps = 4/298 (1%) Query: 22 SQIGLRLASSSKFVGYLFVAPILIFMGIWFYYPLLRSFVYSFQDISFLNPDAATFIGLQN 81 Q + A F GY F+ P L+ +G++ P+L + SFQ ++ L + F+G N Sbjct: 3 KQKASKRAIREAFQGYAFLTPALVTIGVFILLPILYAIYLSFQKVNLL-AGFSEFVGFNN 61 Query: 82 YTEMLKDGDFWGALKNSAIITVIAVPLQSVIALLIAVGLNKITRLKTTFRTLFYLPYITS 141 Y + D AL+N+A I VP Q+++AL++A LN + FR +F+LP +TS Sbjct: 62 YARITDDYRAGIALRNTAFYVAIVVPTQTILALILAACLNAKIKGTNFFRVVFFLPTLTS 121 Query: 142 TVAVTTVFMYLFMQQDGIATKFFTLFGMEDVSWYASTKYALPFLILITVWTYIGFYVVVY 201 + + +FM+++ Q+G+ + G+ +W AL ++++ +W FY+V+Y Sbjct: 122 SAVLALIFMFMYNNQNGLVNQVLASLGLPTYNWLGDPSVALLAIMIMNIWATAPFYMVIY 181 Query: 202 LGGLQNIPYDIYESGMVDGANAWQRLRYITIPMLKPTTFLVLTSGLIYALQLFDQPYALA 261 L L++IP +YE+ +DGA+ Q+ RYIT+PML+P T V+ G+I QLFDQ Y + Sbjct: 182 LAALKDIPASLYEAADLDGASTIQKFRYITVPMLRPITSFVVIMGIIGTFQLFDQSYIFS 241 Query: 262 RNGSLGSPAGATSTIVIYFYSQAF-SFNRAGYGSXXXXXXXXXXXXXXXXQKRFVKED 318 G G P +T TIV+ Y AF S+++ GY + Q++F K + Sbjct: 242 --GGSGGPDNSTLTIVLLIYQYAFQSYDQMGYAAALAFLLAVIILIATLIQRKFQKNE 297 >ref|NP_682335.1| ABC transporter sugar permease protein [Thermosynechococcus elongatus BP-1] dbj|BAC09097.1| ABC transporter sugar permease protein [Thermosynechococcus elongatus BP-1] Length = 298 Score = 172 bits (436), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 98/244 (40%), Positives = 143/244 (58%), Gaps = 6/244 (2%) Query: 49 IWFYYPLLRSFVYSFQDISFLNPDAATFIGLQNYTEMLKDGDFWGALKNSAIITVIAVPL 108 I+ + P+L SF SF + + ++GLQNY ++L DFW + N+ TV V Sbjct: 33 IFVFLPILYLVYLSFTTGSF-SQEGVRWVGLQNYQQLLLSPDFWQVIGNTLYFTVATVLP 91 Query: 109 QSVIALLIAVGLNKITRLKTTFRTLFYLPYITSTVAVTTVFMYLFMQQDGIATKFFTLFG 168 V+ LL+AVGLN+ + + RT ++LP +TS VAV F +LF Q DG + FG Sbjct: 92 TMVLPLLLAVGLNQGIKGRDLLRTAYFLPTMTSIVAVGLGFRWLF-QTDGPVNQLVQAFG 150 Query: 169 MEDVSWYASTKYALPFLILITVWTYIGFYVVVYLGGLQNIPYDIYESGMVDGANAWQRLR 228 + ++W + +A+P LIL++ W +GF +VV+L GLQ IP D YE+ ++DGANAWQ+ R Sbjct: 151 GQPIAWLSDPTWAMPVLILLSSWKQLGFNLVVFLAGLQTIPRDRYEAALLDGANAWQQFR 210 Query: 229 YITIPMLKPTTFLVLTSGLIYALQLFDQPYALARNGSLGSPAGATSTIVIYFYSQAFSFN 288 YIT+P L+PT LV + I+ L+ F+Q Y + G P T+ +V Y Y QAF Sbjct: 211 YITLPGLRPTLVLVFVTTTIFTLRSFEQVYVVTGGG----PLNTTNLLVFYIYQQAFGLF 266 Query: 289 RAGY 292 GY Sbjct: 267 DFGY 270 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.326 0.141 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 440,615,463 Number of extensions: 17897563 Number of successful extensions: 65862 Number of sequences better than 1.0e-05: 1351 Number of HSP's gapped: 64237 Number of HSP's successfully gapped: 1358 Length of query: 319 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 194 Effective length of database: 417,850,203 Effective search space: 81062939382 Effective search space used: 81062939382 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 126 (53.1 bits)