BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0589.0037.p
         (57 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00046646.1| COG0561: Predicted hydrolases of the HAD supe...    55   5e-07
ref|NP_720875.1| conserved hypothetical protein [Streptococcus m...    54   1e-06
ref|NP_939248.1| Conserved hypothetical protein [Corynebacterium...    54   2e-06
ref|NP_965680.1| hypothetical protein LJ0575 [Lactobacillus john...    53   2e-06
ref|NP_721496.1| conserved hypothetical protein [Streptococcus m...    52   3e-06

>ref|ZP_00046646.1| COG0561: Predicted hydrolases of the HAD superfamily [Lactobacillus
           gasseri]
          Length = 265

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%)

Query: 1   MAFGDGYNDLELLVRAAYSFAVRNAVPELKEAANYIIGSNDDNAVMKTIIHMLS 54
           +AFGD  ND  +L     SFA   A+PE K+AAN IIGS++D++V K I+ +LS
Sbjct: 212 IAFGDSGNDEAMLKYVGTSFATATALPEAKKAANQIIGSSEDSSVQKKILELLS 265


>ref|NP_720875.1| conserved hypothetical protein [Streptococcus mutans UA159]
 gb|AAN58181.1| conserved hypothetical protein [Streptococcus mutans UA159]
          Length = 275

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 33/49 (67%)

Query: 1   MAFGDGYNDLELLVRAAYSFAVRNAVPELKEAANYIIGSNDDNAVMKTI 49
           MA GD  NDLE+L  A +S A+ NA PE+K AA+ + GSNDD  V + I
Sbjct: 220 MAIGDALNDLEMLKAAGFSVAMGNASPEVKAAADLVTGSNDDAGVAQAI 268


>ref|NP_939248.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
 emb|CAE49401.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 266

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 39/53 (73%)

Query: 2   AFGDGYNDLELLVRAAYSFAVRNAVPELKEAANYIIGSNDDNAVMKTIIHMLS 54
           AFGD  ND ELL  A  ++A+ NA P++K+ A++++GSND+ +V+ TI  +L+
Sbjct: 211 AFGDYLNDYELLHTAGTAYAMSNAHPDIKDIADHVVGSNDEESVLTTIHSLLT 263


>ref|NP_965680.1| hypothetical protein LJ0575 [Lactobacillus johnsonii NCC 533]
 gb|AAS09646.1| hypothetical protein LJ0575 [Lactobacillus johnsonii NCC 533]
          Length = 261

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 38/54 (70%)

Query: 1   MAFGDGYNDLELLVRAAYSFAVRNAVPELKEAANYIIGSNDDNAVMKTIIHMLS 54
           + FGD  ND+ +L  A  SFA   A+P+ K+AAN IIGS+++++V K I+ +LS
Sbjct: 208 VTFGDSGNDVGMLKFAGTSFATATALPDAKKAANQIIGSSEESSVQKKILELLS 261


>ref|NP_721496.1| conserved hypothetical protein [Streptococcus mutans UA159]
 gb|AAN58802.1| conserved hypothetical protein [Streptococcus mutans UA159]
          Length = 270

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%)

Query: 1   MAFGDGYNDLELLVRAAYSFAVRNAVPELKEAANYIIGSNDDNAVMKTIIHMLS 54
           MAFGDG ND+E+L  A YS+A+ NA   +K AANY   SND++ V+  I + L+
Sbjct: 214 MAFGDGGNDIEMLKLAKYSYAMANAPKNVKAAANYQAKSNDESGVLDVIDNYLA 267


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.320    0.135    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 78,517,419
Number of extensions: 2165154
Number of successful extensions: 6785
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6800
Number of HSP's successfully gapped: 6
Length of query: 57
Length of database: 757,237,578
Length adjustment: 29
Effective length of query: 28
Effective length of database: 678,499,707
Effective search space: 18997991796
Effective search space used: 18997991796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)