BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0589.0032.p (111 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_692153.1| ABC transporter ATP-binding protein [Oceanobaci... 103 2e-21 ref|NP_349875.1| ABC-type multidrug/protein/lipid transport syst... 97 2e-19 ref|NP_388703.1| similar to ABC transporter (ATP-binding protein... 96 3e-19 ref|NP_241681.1| ABC transporter (ATP-binding protein) [Bacillus... 92 4e-18 ref|NP_816233.1| ABC transporter, ATP-binding/permease protein [... 88 5e-17 >ref|NP_692153.1| ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] dbj|BAC13188.1| ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] Length = 601 Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 49/106 (46%), Positives = 74/106 (69%) Query: 1 MSRTTNDIDNILNSLNQSLVQIISSIIMLAGSLTMMLLLNGWLTLIAVVTAPLIAWFASA 60 MSR TNDIDNI N+LNQS++QI SS++ L G+L +ML L+ LT++A+ P++ Sbjct: 147 MSRLTNDIDNINNTLNQSVIQIFSSVLTLVGTLVVMLYLSPILTVVAMSIIPVMYVAMRW 206 Query: 61 VASRTGAQFKAQQQELGKLNGFIEETVSGHRVVALFHQEQRIASEF 106 + RTG +K QQ+ LG++NG++EE VSG VV + QE+ + ++F Sbjct: 207 ITQRTGPLYKLQQRHLGEVNGYVEEIVSGQHVVKTYSQEKYVTNQF 252 >ref|NP_349875.1| ABC-type multidrug/protein/lipid transport system, ATPase component [Clostridium acetobutylicum] pir||D97303 ABC-type multidrug/protein/lipid transport system, ATPase component CAC3281 [imported] - Clostridium acetobutylicum gb|AAK81215.1| ABC-type multidrug/protein/lipid transport system, ATPase component [Clostridium acetobutylicum] Length = 706 Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 70/106 (66%) Query: 1 MSRTTNDIDNILNSLNQSLVQIISSIIMLAGSLTMMLLLNGWLTLIAVVTAPLIAWFASA 60 +SR TND+D + +L QSL Q+I++I+ + G + MML ++GWLTLI V+T P+ + Sbjct: 242 LSRVTNDLDTVATTLQQSLTQLITAILQVIGVVIMMLTISGWLTLICVLTLPVAGFVTMF 301 Query: 61 VASRTGAQFKAQQQELGKLNGFIEETVSGHRVVALFHQEQRIASEF 106 +A ++ F QQ+ELG +NG +EE +GH VV F++EQ +F Sbjct: 302 IAKKSQKFFAGQQKELGMINGHVEEMFTGHIVVKAFNKEQESIEKF 347 >ref|NP_388703.1| similar to ABC transporter (ATP-binding protein) [Bacillus subtilis] sp|P54719|YFIC_BACSU Hypothetical ABC transporter ATP-binding protein yfiC pir||F69802 ABC transporter (ATP-binding protein) homolog yfiC - Bacillus subtilis dbj|BAA09107.1| unknown [Bacillus subtilis] emb|CAB12651.1| yfiC [Bacillus subtilis subsp. subtilis str. 168] Length = 604 Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 48/107 (44%), Positives = 77/107 (71%) Query: 1 MSRTTNDIDNILNSLNQSLVQIISSIIMLAGSLTMMLLLNGWLTLIAVVTAPLIAWFASA 60 MSR TNDI+N+ ++LN S++QI+SS+I G++ +ML ++ LTLI + P++A Sbjct: 147 MSRVTNDIENVSSTLNTSVIQILSSVITFVGTIAVMLYMSPLLTLITLTIIPVMAASLKW 206 Query: 61 VASRTGAQFKAQQQELGKLNGFIEETVSGHRVVALFHQEQRIASEFI 107 + +RTG FK QQ+ LG LNG+IEE+VSG +V+ + +E++I +EF+ Sbjct: 207 ITNRTGKLFKEQQKNLGDLNGYIEESVSGAKVIKAYSREKQITAEFL 253 >ref|NP_241681.1| ABC transporter (ATP-binding protein) [Bacillus halodurans] pir||G83751 ABC transporter (ATP-binding protein) BH0815 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04534.1| ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 611 Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 46/99 (46%), Positives = 66/99 (66%) Query: 1 MSRTTNDIDNILNSLNQSLVQIISSIIMLAGSLTMMLLLNGWLTLIAVVTAPLIAWFASA 60 MSR TNDI+NI N+LN S+++I SS++ L G + +ML L+ +T+I + PL+ + Sbjct: 148 MSRMTNDIENISNTLNSSVIKIFSSVLTLVGIMIVMLWLSPLMTVITMTVVPLMVFGLKW 207 Query: 61 VASRTGAQFKAQQQELGKLNGFIEETVSGHRVVALFHQE 99 + RT FK QQ+ LG LNG+IEETVSG V+ F +E Sbjct: 208 ITRRTAVFFKQQQKALGDLNGYIEETVSGQSVIQAFSRE 246 >ref|NP_816233.1| ABC transporter, ATP-binding/permease protein [Enterococcus faecalis V583] gb|AAO82303.1| ABC transporter, ATP-binding/permease protein [Enterococcus faecalis V583] Length = 622 Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 48/100 (48%), Positives = 63/100 (63%) Query: 1 MSRTTNDIDNILNSLNQSLVQIISSIIMLAGSLTMMLLLNGWLTLIAVVTAPLIAWFASA 60 MSR ND+DNI ++L Q+L Q+I+SI+ G L MML ++ LTLIA+ T PL Sbjct: 162 MSRAINDMDNIASTLQQNLTQLITSIVTFVGVLWMMLTISWQLTLIALATVPLSLIVVMV 221 Query: 61 VASRTGAQFKAQQQELGKLNGFIEETVSGHRVVALFHQEQ 100 VA R+ F AQQ+ LG LN +EET GH VV F+ E+ Sbjct: 222 VAPRSQKHFAAQQKSLGLLNNQVEETYGGHVVVKSFNHEE 261 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.323 0.132 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 123,963,276 Number of extensions: 3692963 Number of successful extensions: 25491 Number of sequences better than 1.0e-05: 225 Number of HSP's gapped: 25550 Number of HSP's successfully gapped: 227 Length of query: 111 Length of database: 757,237,578 Length adjustment: 77 Effective length of query: 34 Effective length of database: 548,174,955 Effective search space: 18637948470 Effective search space used: 18637948470 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 120 (50.8 bits)