BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0589.0020.p
         (135 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||T45509 regulatory protein [imported] - Exiguobacterium sp. ...    77   9e-14
sp|P22853|MERR_BACCE Mercuric resistance operon regulatory prote...    77   1e-13
emb|CAA70225.1| regulatory protein [Bacillus cereus] >gi|2995418...    77   1e-13
gb|EAF76822.1| unknown [environmental sequence]                        77   1e-13
ref|NP_795299.1| transcriptional regulator, MerR family [Pseudom...    77   2e-13

>pir||T45509 regulatory protein [imported] - Exiguobacterium sp. plasmid pKLH3
 emb|CAA67818.1| regulatory protein [Exiguobacterium sp.]
          Length = 132

 Score = 77.4 bits (189), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 48/64 (75%)

Query: 7  GELAKEAKVNIETLRYYEKHGLLPQPQRTASGYRVYTEETLARIIFIQNAKNCGFTLREI 66
          GELA +  VN ET+RYYE+ GL+P+P+RT  GYR+Y+++T+ R+ FI+  +  GFTL EI
Sbjct: 6  GELADKCGVNKETIRYYERLGLIPEPERTEKGYRMYSQQTVDRLHFIKRMQELGFTLNEI 65

Query: 67 TKAL 70
           K L
Sbjct: 66 DKLL 69


>sp|P22853|MERR_BACCE Mercuric resistance operon regulatory protein
 pir||T44501 merR1 protein [imported] - Clostridium butyricum
 gb|AAA83973.1| mercury resistance operon negative regulator MerR1 [Bacillus sp.
          RC607]
 emb|CAA71041.1| regulatory protein [Bacillus megaterium]
 dbj|BAA86113.1| MerR1 [Clostridium butyricum]
 dbj|BAB62429.1| mercury-responsive transcriptional regulator protein [Bacillus
          cereus]
          Length = 132

 Score = 77.4 bits (189), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 48/64 (75%)

Query: 7  GELAKEAKVNIETLRYYEKHGLLPQPQRTASGYRVYTEETLARIIFIQNAKNCGFTLREI 66
          GELA +  VN ET+RYYE+ GL+P+P+RT  GYR+Y+++T+ R+ FI+  +  GFTL EI
Sbjct: 6  GELADKCGVNKETIRYYERLGLIPEPERTEKGYRMYSQQTVDRLHFIKRMQELGFTLNEI 65

Query: 67 TKAL 70
           K L
Sbjct: 66 DKLL 69


>emb|CAA70225.1| regulatory protein [Bacillus cereus]
 emb|CAA70242.1| regulatory protein [Bacillus sphaericus]
          Length = 132

 Score = 77.4 bits (189), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 63/106 (59%)

Query: 7   GELAKEAKVNIETLRYYEKHGLLPQPQRTASGYRVYTEETLARIIFIQNAKNCGFTLREI 66
           GELA++  VN ET+RYYE+ GL+P+P RT  GYR+Y+E+T+ R+ FI+  +   FTL EI
Sbjct: 6   GELAEKCSVNKETIRYYERLGLIPEPDRTEKGYRMYSEQTVDRLNFIKRMQELDFTLNEI 65

Query: 67  TKALKKSEDGKLSIPDFIMAIERKMTAVDLEIAKREKTRLLLVDLK 112
            K L   +  +    D       K+  +  +I   ++   +LVDLK
Sbjct: 66  DKLLGVVDRDETKCRDMYDFTVLKIEDIQRKIEDLKRIERILVDLK 111


>gb|EAF76822.1| unknown [environmental sequence]
          Length = 127

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 47/62 (75%)

Query: 9  LAKEAKVNIETLRYYEKHGLLPQPQRTASGYRVYTEETLARIIFIQNAKNCGFTLREITK 68
          LA+ A+V++ET+RYYE+ GL+ QP + A GYR YT+ TLARI+FI+ A+  GFTL EI  
Sbjct: 2  LAQAAQVSVETIRYYERRGLITQPPKPAQGYRTYTKATLARILFIKRAQELGFTLEEIEN 61

Query: 69 AL 70
           L
Sbjct: 62 LL 63


>ref|NP_795299.1| transcriptional regulator, MerR family [Pseudomonas syringae pv.
           tomato str. DC3000]
 gb|AAO58994.1| transcriptional regulator, MerR family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 144

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 66/111 (59%)

Query: 7   GELAKEAKVNIETLRYYEKHGLLPQPQRTASGYRVYTEETLARIIFIQNAKNCGFTLREI 66
           G L+K    +IET+RYYEK GLLP   R+   +R+YTE+  +R+IFI+  +  GF L +I
Sbjct: 5   GALSKTTGCHIETIRYYEKIGLLPPALRSTGRHRIYTEKHRSRLIFIRQNRELGFPLDDI 64

Query: 67  TKALKKSEDGKLSIPDFIMAIERKMTAVDLEIAKREKTRLLLVDLKRNLES 117
            + +  + D      D +  +++ +  V+ ++AK ++ R+ L+ + R  ES
Sbjct: 65  RELIALAADADRPCADALSVVKKHLAEVESKVAKLQQIRIELLSMSRTCES 115


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.318    0.135    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 169,815,925
Number of extensions: 5635310
Number of successful extensions: 19516
Number of sequences better than 1.0e-05: 301
Number of HSP's gapped: 19624
Number of HSP's successfully gapped: 301
Length of query: 135
Length of database: 757,237,578
Length adjustment: 97
Effective length of query: 38
Effective length of database: 493,872,975
Effective search space: 18767173050
Effective search space used: 18767173050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)