BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0589.0018.p (169 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_104067.1| probable oxidoreductase [Mesorhizobium loti MAF... 102 3e-21 ref|NP_979074.1| oxidoreductase, zinc-binding [Bacillus cereus A... 101 6e-21 ref|NP_815379.1| oxidoreductase, zinc-binding [Enterococcus faec... 101 7e-21 ref|NP_691739.1| zinc-binding oxidoreductase [Oceanobacillus ihe... 96 3e-19 ref|NP_469965.1| similar to oxidoreductase [Listeria innocua] >g... 93 2e-18 >ref|NP_104067.1| probable oxidoreductase [Mesorhizobium loti MAFF303099] dbj|BAB49853.1| probable oxidoreductase [Mesorhizobium loti] Length = 308 Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 88/166 (53%), Gaps = 16/166 (9%) Query: 1 VGHVAVQLAKQHGAYVIATARDYNHDFVRGLGADEVIDYTKADFTTQITDPVDIVLDTAK 60 VGH+AVQ+AK GAYVIATA DFVR L ADEVIDYT+ DF +I+D +D+VLD Sbjct: 156 VGHLAVQIAKARGAYVIATASPNKLDFVRKLSADEVIDYTQGDFAGRISD-IDLVLDP-- 212 Query: 61 DASTFGTGLPGEIGEKNFSVIKDGGTYISVVAF--GINQYPKVRNIHAHFFQAQPNRTDF 118 + GE E++ VI++GG +S++ R+I P+R Sbjct: 213 --------IGGEHAERSLKVIRNGGVLVSLLDLNEATRALASARDIRVERMSVVPDREGL 264 Query: 119 ESIAHHMKGNKLKIHVNETFAFTAQGLHQAYRKSEELPKRGKIVIS 164 + + NKL +HV ++F G A+ ++ + GK+ ++ Sbjct: 265 MELGRLIDANKLTVHVAKSFPLEESGAAHAFLATKPI---GKVALT 307 >ref|NP_979074.1| oxidoreductase, zinc-binding [Bacillus cereus ATCC 10987] gb|AAS41682.1| oxidoreductase, zinc-binding [Bacillus cereus ATCC 10987] Length = 308 Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 61/163 (37%), Positives = 93/163 (57%), Gaps = 14/163 (8%) Query: 1 VGHVAVQLAKQHGAYVIATARDYNHDFVRGLGADEVIDYTKADFTTQITDPVDIVLDTAK 60 VG +A+Q+AK GA+V TA N +F++ LGAD VIDY K F ++D DIVLDT Sbjct: 157 VGSLAIQIAKSFGAFVATTASSKNEEFLKSLGADLVIDYKKDKFEELLSD-FDIVLDT-- 213 Query: 61 DASTFGTGLPGEIGEKNFSVIKDGGTYISVVAFGINQYPKVRNIHAHFFQAQPNRTDFES 120 + GE+ EK+F ++K GG +S+V I KV+ I + F +PN E+ Sbjct: 214 --------IGGEVQEKSFQILKPGGVLVSIVHEPIQ---KVKEIKSGFLWLKPNGKQLEA 262 Query: 121 IAHHMKGNKLKIHVNETFAFTAQGLHQAYRKSEELPKRGKIVI 163 ++ + K+K +++ F+ +G+ +A+ SE RGKIVI Sbjct: 263 LSDLIVHGKVKPIISKVMPFSEEGIREAHILSEGQHVRGKIVI 305 >ref|NP_815379.1| oxidoreductase, zinc-binding [Enterococcus faecalis V583] gb|AAO81449.1| oxidoreductase, zinc-binding [Enterococcus faecalis V583] Length = 313 Score = 101 bits (251), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 63/164 (38%), Positives = 90/164 (54%), Gaps = 12/164 (7%) Query: 1 VGHVAVQLAKQHGAYVIATARDYNHDFVRGLGADEVIDYTKADFTTQITDPVDIVLDTAK 60 VG A+QLAK+ GA+VI TA NH ++ +GADEVIDY +F +TD VD+V DT Sbjct: 157 VGTYAIQLAKEAGAHVITTASAKNHTLLKKIGADEVIDYHTTNFAEVLTD-VDLVFDT-- 213 Query: 61 DASTFGTGLPGEIGEKNFSVIK-DGGTYISVVAFGINQYPKVRNIHAHFFQAQPNRTDFE 119 + GE+ + +F+V+K + G +S+V Q +NI A QPN + Sbjct: 214 --------MGGEVQKNSFAVLKPNTGRLVSIVGIEDKQLAAEKNISAESIWLQPNGEQLQ 265 Query: 120 SIAHHMKGNKLKIHVNETFAFTAQGLHQAYRKSEELPKRGKIVI 163 IA M K+K + E F F+ QG++ A+ SE GKIV+ Sbjct: 266 KIADLMAAGKVKSIIGEVFPFSRQGIYDAHALSETHHAVGKIVV 309 >ref|NP_691739.1| zinc-binding oxidoreductase [Oceanobacillus iheyensis HTE831] dbj|BAC12774.1| zinc-binding oxidoreductase [Oceanobacillus iheyensis HTE831] Length = 311 Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/163 (36%), Positives = 85/163 (52%), Gaps = 11/163 (6%) Query: 1 VGHVAVQLAKQHGAYVIATARDYNHDFVRGLGADEVIDYTKADFTTQITDPVDIVLDTAK 60 VG A+Q AK GAYV TA N V+ LGAD I+Y + +F + D DIV+DT Sbjct: 157 VGSFAIQFAKHFGAYVATTASGKNESLVKELGADRFINYKEENFNEVLED-YDIVVDT-- 213 Query: 61 DASTFGTGLPGEIGEKNFSVIKDGGTYISVVAFGINQYPKVRNIHAHFFQAQPNRTDFES 120 L G+I E++F V+K+GG +S+ + K + I A F + N Sbjct: 214 --------LGGDILEQSFEVLKEGGKLVSIAGNPDEEKAKEKGIKAGFLWLEENGKQLSE 265 Query: 121 IAHHMKGNKLKIHVNETFAFTAQGLHQAYRKSEELPKRGKIVI 163 +A ++ K+K + TF T QGL +A++ SE RGKIVI Sbjct: 266 VADLLENGKVKSVIGHTFPLTEQGLREAHQLSETHHARGKIVI 308 >ref|NP_469965.1| similar to oxidoreductase [Listeria innocua] pir||AF1510 oxidoreductase homolog lin0622 [imported] - Listeria innocua (strain Clip11262) emb|CAC95854.1| lin0622 [Listeria innocua] Length = 313 Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 90/167 (53%), Gaps = 12/167 (7%) Query: 1 VGHVAVQLAKQHGAYVIATARDYNHDFVRGLGADEVIDYTKADFTTQITDPVDIVLDTAK 60 VG +A+QLAK GA VI TA NH+ ++ LGAD+VIDY + +F ++D +D+V DT Sbjct: 157 VGTLAIQLAKYAGAEVITTASAKNHELLKSLGADQVIDYKEVNFKDVLSD-IDVVFDT-- 213 Query: 61 DASTFGTGLPGEIGEKNFSVIKDG-GTYISVVAFGINQYPKVRNIHAHFFQAQPNRTDFE 119 + G+I ++ V+K+G G +S+V K +N+ A+ QPN + Sbjct: 214 --------MGGQIETDSYDVLKEGTGRLVSIVGISNEDRAKEKNVTANGIWLQPNGEQLK 265 Query: 120 SIAHHMKGNKLKIHVNETFAFTAQGLHQAYRKSEELPKRGKIVISKN 166 + + +K V TF F+ +G+ A+ SE GKIVIS N Sbjct: 266 KLGELLANKTVKPIVGATFPFSEKGVFDAHALSETHHAVGKIVISFN 312 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 256,321,195 Number of extensions: 10508105 Number of successful extensions: 24559 Number of sequences better than 1.0e-05: 83 Number of HSP's gapped: 24609 Number of HSP's successfully gapped: 83 Length of query: 169 Length of database: 757,237,578 Length adjustment: 117 Effective length of query: 52 Effective length of database: 439,570,995 Effective search space: 22857691740 Effective search space used: 22857691740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 121 (51.2 bits)