BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0589.0006.p (251 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00144621.1| ABC transporter ATP-binding protein [Fusobact... 197 2e-49 ref|NP_406494.1| putative ABC transporter, ATP-binding protein [... 196 3e-49 ref|NP_782408.1| ABC transporter ATP-binding protein [Clostridiu... 196 5e-49 ref|NP_603724.1| ABC transporter ATP-binding protein [Fusobacter... 195 6e-49 ref|ZP_00059676.1| COG1136: ABC-type antimicrobial peptide trans... 193 3e-48 >ref|ZP_00144621.1| ABC transporter ATP-binding protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gb|EAA23782.1| ABC transporter ATP-binding protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 220 Score = 197 bits (500), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 101/221 (45%), Positives = 143/221 (64%), Gaps = 1/221 (0%) Query: 10 LMLRVENISHTFKSGSEVTPVLHNISFEVHQGDMVALLGSSGSGKSTMLNLMAGLMKPTE 69 +++ V+NI+ T+K+GS VL NISF+V +G+ +A++GSSGSGKSTM+N++ L E Sbjct: 1 MIITVDNINKTYKNGSLELQVLKNISFKVDKGEFLAIMGSSGSGKSTMMNILGCLDNQYE 60 Query: 70 GHIYIADQDIVKMGENKLAVFRRKNIGFIFQAYELITSLTVRENVELPLVFQSVSPSVRK 129 G + DI + EN+L+ R K IGFIFQ++ L+ LT ENVELPLV+ S+ R Sbjct: 61 GRYILDGIDISRSTENELSEIRNKKIGFIFQSFNLLPRLTALENVELPLVYSSIPKEERH 120 Query: 130 KKSLALLEAVGIPDKSEMFPSQLSGGQQQRVSIARSLITEPSIIFADEPTGNXXXXXXXX 189 K++ LLE VG+ D++ P++LSGGQ+QRV+IAR+L+ PSII ADEPTGN Sbjct: 121 KRANELLEMVGLKDRTHHRPNELSGGQRQRVAIARALVNNPSIILADEPTGNLDSKSEGE 180 Query: 190 XXXXXXXXNKKMKTTFIVVTHEPEVAEHMQRIFTLRDGHMI 230 N KM T ++VTHEP + E +R +DG +I Sbjct: 181 IIEILQKLN-KMGKTIVIVTHEPSIGEIAERKIVFKDGEII 220 >ref|NP_406494.1| putative ABC transporter, ATP-binding protein [Yersinia pestis] ref|NP_668800.1| putative ATP-binding component of a transport system [Yersinia pestis KIM] ref|NP_993941.1| putative ABC transporter, ATP-binding protein [Yersinia pestis biovar Mediaevails str. 91001] pir||AI0364 probable ABC transporter, ATP-binding protein YPO3000 [imported] - Yersinia pestis (strain CO92) emb|CAC92244.1| putative ABC transporter, ATP-binding protein [Yersinia pestis CO92] gb|AAM85051.1| putative ATP-binding component of a transport system [Yersinia pestis KIM] gb|AAS62818.1| putative ABC transporter, ATP-binding protein [Yersinia pestis biovar Mediaevails str. 91001] Length = 678 Score = 196 bits (499), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 95/237 (40%), Positives = 154/237 (64%), Gaps = 2/237 (0%) Query: 6 KKEQLMLRVENISHTFKSGSEVTPVLHNISFEVHQGDMVALLGSSGSGKSTMLNLMAGLM 65 ++ +++LR+EN+S F +G + VL+NI+ +H G+MVA++G+SGSGKST++N++ L Sbjct: 5 QQGKILLRLENVSREFITGEQTVRVLNNINLTLHSGEMVAIVGTSGSGKSTLMNILGCLD 64 Query: 66 KPTEGHIYIADQDIVKMGENKLAVFRRKNIGFIFQAYELITSLTVRENVELPLVFQSVSP 125 KP+ G ++A + +G + LA RR++ GFIFQ Y L+ L+ RENVE+P ++ + Sbjct: 65 KPSAGEYWVAGRIPQYLGSDALAELRREHFGFIFQRYHLLNDLSARENVEIPAIYAGIDR 124 Query: 126 SVRKKKSLALLEAVGIPDKSEMFPSQLSGGQQQRVSIARSLITEPSIIFADEPTGNXXXX 185 R+K+++ LL +G+ ++ + PSQLSGGQQQRVSIAR+L+ +I ADEPTG Sbjct: 125 EERRKRAVNLLSRIGLAERLDYRPSQLSGGQQQRVSIARALMNGGDVILADEPTGALDTH 184 Query: 186 XXXXXXXXXXXXNKKMKTTFIVVTHEPEVAEHMQRIFTLRDGHMITEK-RGTAESEP 241 +++ T ++VTH+ +AEH QRI L+DG +I ++ R A+ +P Sbjct: 185 SGNEVLNILKDLHQQGHTV-VIVTHDMSIAEHAQRIIELKDGEIIADRPRDHAQEKP 240 >ref|NP_782408.1| ABC transporter ATP-binding protein [Clostridium tetani E88] gb|AAO36345.1| ABC transporter ATP-binding protein [Clostridium tetani E88] Length = 226 Score = 196 bits (497), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 93/224 (41%), Positives = 141/224 (62%), Gaps = 2/224 (0%) Query: 11 MLRVENISHTFKSGSEVTPVLHNISFEVHQGDMVALLGSSGSGKSTMLNLMAGLMKPTEG 70 +L+VEN+S + G+ L N+SF + +G+ VA++G+SGSGKST+L+++ GL KPT G Sbjct: 3 ILKVENLSKIYGEGNNRVEALRNVSFAIERGEFVAIVGASGSGKSTLLHMIGGLDKPTSG 62 Query: 71 HIYIADQDIVKMGENKLAVFRRKNIGFIFQAYELITSLTVRENVELPLVFQSVSPSVRKK 130 +YI +DI K+ E+ LA+FRR+N+GF+FQ + LI L V EN+ LP + + K Sbjct: 63 KVYIDGEDIYKLKEDNLAIFRRRNVGFVFQFFNLIPVLNVEENISLPALLD--KDKIDKA 120 Query: 131 KSLALLEAVGIPDKSEMFPSQLSGGQQQRVSIARSLITEPSIIFADEPTGNXXXXXXXXX 190 ++E +G+ ++ PS+LSGGQQQRVSI R+LI +PSII ADEPTGN Sbjct: 121 YLKEVVEMLGLKERITHLPSELSGGQQQRVSIGRALINKPSIILADEPTGNLDSKNSKEV 180 Query: 191 XXXXXXXNKKMKTTFIVVTHEPEVAEHMQRIFTLRDGHMITEKR 234 +KK T I++TH+ +AE R+ + DG + ++ + Sbjct: 181 IELLKYSSKKYNQTLIIITHDMNIAEQADRVINIVDGEIKSDNK 224 >ref|NP_603724.1| ABC transporter ATP-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gb|AAL95023.1| ABC transporter ATP-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 220 Score = 195 bits (496), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 101/221 (45%), Positives = 142/221 (64%), Gaps = 1/221 (0%) Query: 10 LMLRVENISHTFKSGSEVTPVLHNISFEVHQGDMVALLGSSGSGKSTMLNLMAGLMKPTE 69 +++ V+ I+ T+K+GS VL NISF+V +G+ +A++GSSGSGKSTM+N++ L E Sbjct: 1 MIITVDKINKTYKNGSLELQVLKNISFKVDKGEFLAIMGSSGSGKSTMMNILGCLDNQYE 60 Query: 70 GHIYIADQDIVKMGENKLAVFRRKNIGFIFQAYELITSLTVRENVELPLVFQSVSPSVRK 129 G + DI K EN+L+ R K IGFIFQ++ L+ LT ENVELPLV+ S+ R Sbjct: 61 GRYILDGIDISKSTENELSEIRNKKIGFIFQSFNLLPRLTALENVELPLVYSSIPKEERH 120 Query: 130 KKSLALLEAVGIPDKSEMFPSQLSGGQQQRVSIARSLITEPSIIFADEPTGNXXXXXXXX 189 K++ LLE VG+ D++ P++LSGGQ+QRV+IAR+L+ PSII ADEPTGN Sbjct: 121 KRANELLEMVGLKDRTHHRPNELSGGQRQRVAIARALVNNPSIILADEPTGNLDSKSEEE 180 Query: 190 XXXXXXXXNKKMKTTFIVVTHEPEVAEHMQRIFTLRDGHMI 230 N KM T ++VTHEP + E +R +DG +I Sbjct: 181 IIEILQKLN-KMGKTIVIVTHEPSIGEIAERKIIFKDGEII 220 >ref|ZP_00059676.1| COG1136: ABC-type antimicrobial peptide transport system, ATPase component [Clostridium thermocellum ATCC 27405] Length = 223 Score = 193 bits (490), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 131/206 (63%) Query: 24 GSEVTPVLHNISFEVHQGDMVALLGSSGSGKSTMLNLMAGLMKPTEGHIYIADQDIVKMG 83 GSE L +I+ E+++G+ LG+SGSGKST+LN++AGL KPT G I I + +I K+ Sbjct: 2 GSEKVVALQDINMEIYKGEFCCFLGTSGSGKSTLLNVLAGLEKPTRGSIKIKNVNIEKLN 61 Query: 84 ENKLAVFRRKNIGFIFQAYELITSLTVRENVELPLVFQSVSPSVRKKKSLALLEAVGIPD 143 E KLA FR+ N+GF+FQAY L++ L ENV LPL+F+ V R K+++ LL+AVG+ Sbjct: 62 EKKLAAFRQDNVGFVFQAYNLVSHLDAVENVSLPLMFKGVPKKERTKRAVELLKAVGLSK 121 Query: 144 KSEMFPSQLSGGQQQRVSIARSLITEPSIIFADEPTGNXXXXXXXXXXXXXXXXNKKMKT 203 P+Q+SGGQQQRV IAR+ +T P I+FADEPTGN K + Sbjct: 122 HLRHKPTQMSGGQQQRVGIARAFVTNPEIVFADEPTGNLDSKTSMEVLELMAGLAMKNRQ 181 Query: 204 TFIVVTHEPEVAEHMQRIFTLRDGHM 229 T I+VTH+ +A+ RI + DG + Sbjct: 182 TLIMVTHDLNIAKRADRIIYILDGRI 207 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.131 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 322,659,706 Number of extensions: 11740653 Number of successful extensions: 102437 Number of sequences better than 1.0e-05: 19879 Number of HSP's gapped: 81401 Number of HSP's successfully gapped: 20997 Length of query: 251 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 128 Effective length of database: 423,280,401 Effective search space: 54179891328 Effective search space used: 54179891328 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 124 (52.4 bits)