BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0587.0011.p (1180 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244732.1| BH3865~unknown [Bacillus halodurans] >gi|253705... 694 0.0 ref|ZP_00060097.1| hypothetical protein [Clostridium thermocellu... 130 2e-28 ref|ZP_00061324.1| COG3401: Fibronectin type 3 domain-containing... 130 3e-28 pir||A48490 endo-1,4-beta-xylanase (EC 3.2.1.8) A precursor - Th... 119 7e-25 ref|ZP_00060727.1| hypothetical protein [Clostridium thermocellu... 115 6e-24 >ref|NP_244732.1| BH3865~unknown [Bacillus halodurans] pir||A84133 hypothetical protein BH3865 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07584.1| BH3865~unknown [Bacillus halodurans] Length = 946 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/893 (41%), Positives = 519/893 (58%), Gaps = 43/893 (4%) Query: 56 SMTEARTLPITLALPEGVTANQLTWNFGRTAEEMKPLAQWKKWNNASSVRAYTGDPFIKV 115 S+TE R + ++ ++P+ + + W FG KPL WK W+ S R ++GD FI Sbjct: 49 SLTEEREVKVSFSIPDHLELDDFVWAFGG-----KPLEDWKSWDGES--RDFSGDSFITF 101 Query: 116 SYEPA---SPSTVTALVYFDMPFG-GNLSISGIRAEYVKLAGTYNLTATAPDGHVLVQQQ 171 + EP + V A ++F +PFG +LS IR Y +L G Y+L T P + Q Sbjct: 102 TKEPTIDRKTNDVHATLHFSLPFGTDDLSPRTIRVRYPELMGEYDLAVTHPSSGFSLSQS 161 Query: 172 VKLNPYDTYHTYDEIKPAIDRITADSNNKYGRYVEYQQIGTSTQGRAIHFSIVAKDKASV 231 + L YD + TY+EIKPAID + D+ RY+EYQ +G S +GR +HF ++AKD+ +V Sbjct: 162 MSLKVYDEFLTYEEIKPAIDEVLQDAPED--RYLEYQSLGKSVEGRDLHFVVLAKDEEAV 219 Query: 232 DQYLNETLPLMNNDPAALQEMIKNGQLQNYKVPIWLNNIHADEANGVDVIIKFLDTLMTQ 291 +YLNETLP P L E +++G L++Y+VPIW NNIH DE G+D ++ TL + Sbjct: 220 HRYLNETLPTALEQPERLLETLEDGTLEDYQVPIWFNNIHPDEVEGIDAQMEVFRTLALE 279 Query: 292 KIVNYDTTDAKGNVVPVALDIDKALDNVIFLLDYVENPDGRALNTRATSTLLDPNRDNSY 351 V + T D G+ V D++ AL++VIFL + NPDGR NTR + D NRDN+Y Sbjct: 280 DQVTFHTEDEDGHRKEVTFDVEDALNHVIFLFHFTHNPDGRVANTRENANGFDLNRDNAY 339 Query: 352 QTQPETQAVTAQIAKWTPLSFLDMHGFVSGFLIEPCTPPHDPNIEYDLVLDNMLEQATAM 411 QTQPET V I KWTPLSF+D+HG+V GFLIEP TPPH+PN EYDL++D+M+ QA AM Sbjct: 340 QTQPETIQVNEHIGKWTPLSFIDLHGYVEGFLIEPATPPHNPNFEYDLLVDSMIGQAHAM 399 Query: 412 GNAGIANTKYNAYHIPYLEAEKLKNDPNYANPYGNATGWDDASPAYTAVYAMHQGALGHT 471 G AGI ++ ++Y IP L+ E GWDD SPAYTA++AM GA+ HT Sbjct: 400 GRAGIGSSTLDSYFIPLLDWE---------------NGWDDMSPAYTAMFAMLHGAIAHT 444 Query: 472 IEVPELNEDSLDAFYYAALAATHYVQNNKEKLFLNQLEIFKRGMNNEDHKEVDKYLVNAK 531 +EVP L++DS A + A YV NK+ LF +QLE+F RG+ EDH+ VD++ VN + Sbjct: 445 VEVPTLSQDSYRAMVGLSYGAIDYVLTNKDALFQHQLELFARGVRGEDHRSVDEWFVNQE 504 Query: 532 YESIGRKRATEATNFFPEYYVLPVAKDLQKNELETYKMVQYLLRNGVKVEQTTTPVTVDG 591 + IGR+R + FFPEYYVLP+ QKNELE +MV+Y LRNG++VEQTT+PV V+G Sbjct: 505 GDVIGRQRGAHDS-FFPEYYVLPIGA-AQKNELEAKRMVEYFLRNGIQVEQTTSPVAVNG 562 Query: 592 VTYPSGTYVVNMHQAKRGYANLVLYDGLDVSDFNEMYSDTVQNFADMRGFDRYISRTAGA 651 VTY GTYV+ M QAKRG+ N +LY G D+SD+ MY V NF +RGFD R A Sbjct: 563 VTYEQGTYVIPMAQAKRGFVNAMLYSGADLSDWTAMYDSVVVNFPALRGFDVVEVRQKDA 622 Query: 652 FTGKTQQVSSVVIPTTDLNQYRFEQNYVIRNSNNDAIKAVNELLANKKAVTLLSNGGPGY 711 F G+ + V V T L + YV+ NSNN+AI+ VN+LL K V + + Sbjct: 623 FKGEAEPVQEV--EWTSLAVHGKNSYYVVANSNNEAIQLVNQLLKAGKPVYVAAKSHRTV 680 Query: 712 EQGSFLVSRSNLKTVASKYLLDLVPFSASADKTGKLLKPANVGIAGAPS--FILADLGFK 769 ++G F+V +L+ +D P + K L V + G+ +++ LGF Sbjct: 681 QEGDFIVRSRDLQAPLKNTHVDATPLHNKSSVHVKRLSQPKVAVVGSAQTRYVIEQLGFP 740 Query: 770 XXXXXXXXXXLVNAG--TSLIAGGKPFIGYGRTMLSSIKSLKILPGLDYSNPVNKSNNPA 827 + + G A GK ++G G L +I+ +L G + Sbjct: 741 IVSTDEADVIVDDLGNFNRKEASGKMYVGIGGRSLQAIEEANVLKGF------ATGSTAL 794 Query: 828 AHEGLFKATVSQDSVITAPYADNEYLYTVSAAYITAVPEGAEVLAKYGTGEDFFKAGWWP 887 HEGL +A V ++S TA Y E LY + ++I +P+ A +LA +DF +GWWP Sbjct: 795 NHEGLLEA-VMENSRYTAGYEKEEALYVTTGSWIAELPDKATILATVADRDDFLISGWWP 853 Query: 888 NSDAAKGQVLALNYQKDNIHVTLFANDLLNKYHPQNQFRLLANAIYASSPAAT 940 + A+GQV+ + + + LFANDL + HPQ+ +RLLAN+++A+ + T Sbjct: 854 EHEKARGQVIVASIEMNETDYVLFANDLTFRAHPQHSYRLLANSLFAAKESCT 906 >ref|ZP_00060097.1| hypothetical protein [Clostridium thermocellum ATCC 27405] pir||JC6031 scaffoldin dockerin binding protein precursor - Clostridium thermocellum gb|AAB07763.1| SdbA Length = 631 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/178 (41%), Positives = 101/178 (56%), Gaps = 4/178 (2%) Query: 1000 FTDLGRVAWAVSAIEELTAKGILNGVGGNAFAPLKEVTRAEFITMIVRAFDLQTENASAT 1059 F D+G AWA IE L +KG++NG F P ++TRA+F+ ++V+A L E ++ Sbjct: 454 FADIGSYAWAKKQIEVLASKGVINGTSDTTFTPQADITRADFMILLVKALGLTAE-VTSN 512 Query: 1060 FSDVSAADWSYSYIAAGVSNGLINGVGNGKFEPKRSITREEMAIIAANALTKFKGK-SVT 1118 F DVS D+ Y Y+ G+ GVGN KF PK ITR++M ++ NAL + GK S T Sbjct: 513 FDDVSEKDYYYEYVGIAKELGITTGVGNNKFNPKAKITRQDMMVLTTNAL-RIAGKISST 571 Query: 1119 NADAALANFKDKSSIAPYGKNAVALLTQEGIVKGMTVSTFAPKGIANRAQAAVIISNI 1176 A + F DK IA Y VA L +EGIV G + P+G A+RA+ A II I Sbjct: 572 GTRADVERFSDKDQIASYAVEGVATLVKEGIVVG-SGDIINPRGNASRAELAAIIYKI 628 >ref|ZP_00061324.1| COG3401: Fibronectin type 3 domain-containing protein [Clostridium thermocellum ATCC 27405] Length = 1042 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 75/182 (41%), Positives = 106/182 (58%), Gaps = 5/182 (2%) Query: 1000 FTDLGRVAWAVSAIEELTAKGILNGVGGNA--FAPLKEVTRAEFITMIVRAFDLQTENAS 1057 F DL V WA AIE L A+GI++G FAP +TRAEFIT+IV AF L ++ + Sbjct: 861 FNDLNSVPWAKEAIESLAARGIIHGKSEEQGIFAPNDRITRAEFITLIVNAFQL-SKTPT 919 Query: 1058 ATFSDVSAADWSYSYIAAGVSNGLINGVGNGKFEPKRSITREEMAIIAANALTKFKGKSV 1117 TF+DV W Y + + G+++G GN F P I RE+MA+I A K GK + Sbjct: 920 GTFADVKPNHWYYRNVMIAKNMGIVSGTGNNYFYPDDPIKREDMAVILAKTF-KIIGKPL 978 Query: 1118 TN-ADAALANFKDKSSIAPYGKNAVALLTQEGIVKGMTVSTFAPKGIANRAQAAVIISNI 1176 N +D+ L + DK+ I+ Y ++A+L EGI+ G + S +PK A RA+AAVI+ Sbjct: 979 PNHSDSVLDKYSDKNLISIYALQSMAILNGEGIITGKSSSQLSPKDYATRAEAAVILYKA 1038 Query: 1177 IN 1178 +N Sbjct: 1039 LN 1040 >pir||A48490 endo-1,4-beta-xylanase (EC 3.2.1.8) A precursor - Thermoanaerobacterium saccharolyticum (strain B6A-RI) gb|AAA21812.1| endoxylanase Length = 1231 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 74/183 (40%), Positives = 103/183 (56%), Gaps = 10/183 (5%) Query: 998 VHFTDLGRVAWAVSAIEELTAKGILNGVGGNAFAPLKEVTRAEFITMIVRAFDLQTENAS 1057 V F D+ + +WA AIE L ++ I+ G+ + P K VTRAEF MI+R +++ E S Sbjct: 1054 VTFDDI-KNSWAKDAIEVLASRHIVEGMTDTQYEPNKTVTRAEFTAMILRLLNIKEEQYS 1112 Query: 1058 ATFSDVSAADWSYSYIAAGVSNGLINGVGNGKFEPKRSITREEMAIIAANA---LTKFKG 1114 FSDV++ DW + I A G+I G G P SITREEM IA A LT++K Sbjct: 1113 GEFSDVNSGDWYANAIEAAYKAGIIEGDGKNA-RPNDSITREEMTAIAMRAYEMLTQYKE 1171 Query: 1115 KSVTNADAALANFKDKSSIAPYGKNAVALLTQEGIVKGMTVSTFAPKGIANRAQAAVIIS 1174 +++ +F D SI+ + KN VA + GIV G + FAPK IA RA+AA II Sbjct: 1172 ENI-----GATSFSDDKSISDWAKNVVANAAKLGIVNGEPNNMFAPKDIATRAEAAAIIY 1226 Query: 1175 NII 1177 ++ Sbjct: 1227 GLL 1229 Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 60/119 (50%), Gaps = 7/119 (5%) Query: 999 HFTDLGRVAWAVSAIEELTAKGILNGVGGNAFAPLKEVTRAEFITMIVRAFDLQT----E 1054 F+D+ W +AIE GI+ G G NA P +TR E + +RA+++ T E Sbjct: 1114 EFSDVNSGDWYANAIEAAYKAGIIEGDGKNA-RPNDSITREEMTAIAMRAYEMLTQYKEE 1172 Query: 1055 NASAT-FSD-VSAADWSYSYIAAGVSNGLINGVGNGKFEPKRSITREEMAIIAANALTK 1111 N AT FSD S +DW+ + +A G++NG N F PK TR E A I L K Sbjct: 1173 NIGATSFSDDKSISDWAKNVVANAAKLGIVNGEPNNMFAPKDIATRAEAAAIIYGLLEK 1231 >ref|ZP_00060727.1| hypothetical protein [Clostridium thermocellum ATCC 27405] Length = 2547 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 70/175 (40%), Positives = 97/175 (55%), Gaps = 3/175 (1%) Query: 1000 FTDLGRVAWAVSAIEELTAKGILNGVGGNAFAPLKEVTRAEFITMIVRAFDLQTENASAT 1059 F DL WA IE L +KGI+NG ++P +TRA+ + +IV+A L+ E + Sbjct: 2363 FDDLKGYDWAKEQIEILASKGIINGTSSTKYSPGLNITRADAVILIVKALGLEAE-FTEN 2421 Query: 1060 FSDVSAADWSYSYIAAGVSNGLINGVGNGKFEPKRSITREEMAIIAANALTKFKGKSVTN 1119 F DVSA + Y + S G++ GVGN KF P+ ITR+E+ +I AL K G ++ Sbjct: 2422 FDDVSADKYYYEAVGIARSFGIVTGVGNNKFNPETPITRQELMVIVNRAL-KVVGINLDT 2480 Query: 1120 ADAA-LANFKDKSSIAPYGKNAVALLTQEGIVKGMTVSTFAPKGIANRAQAAVII 1173 D + L FKD S I+PY +VA L + GI+KG AP RA+ AVII Sbjct: 2481 GDVSELEAFKDFSEISPYAVESVAALVKAGIIKGDDNKLIAPLRNITRAETAVII 2535 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.314 0.131 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,640,132,046 Number of extensions: 69561102 Number of successful extensions: 128759 Number of sequences better than 1.0e-05: 148 Number of HSP's gapped: 128351 Number of HSP's successfully gapped: 200 Length of query: 1180 Length of database: 757,237,578 Length adjustment: 137 Effective length of query: 1043 Effective length of database: 385,269,015 Effective search space: 401835582645 Effective search space used: 401835582645 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)