BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0084.p
         (176 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_242340.1| BH1474~unknown [Bacillus halodurans] >gi|254898...    54   2e-06
ref|NP_243340.1| BH2474~unknown conserved protein in B. subtilis...    54   2e-06

>ref|NP_242340.1| BH1474~unknown [Bacillus halodurans]
 pir||B83834 hypothetical protein BH1474 [imported] - Bacillus halodurans
           (strain C-125)
 dbj|BAB05193.1| BH1474~unknown [Bacillus halodurans]
          Length = 745

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 3/141 (2%)

Query: 1   VLLQVLSSSEVPPAVKEAAGXXXXXXXXXXXXXNTDRTAPFAQVTMFLPLRGPDGQETAS 60
           +LL +L S E      + A                D       + M LP       E   
Sbjct: 572 LLLHMLRSEEEGSRTFQLANQALNNVTGQQLLSKADHHTNMQTLFMNLPFLLEKQVENLQ 631

Query: 61  VHIQSRR-GRKGELDAANCRLWFDLDMKQLGQTLVDVQVVDRIVSLKLHNDTPWVLELLE 119
           V +QSR  G+K  +D  NC L+F ++ K+LG+  + VQVVDR +S+ L ND     E +E
Sbjct: 632 VFVQSRNEGQK--IDWENCSLFFLIETKKLGEIGILVQVVDRQLSVTLKNDLDDFPEKME 689

Query: 120 ERKEEIGAAVEAIGYQLLSLR 140
              E+    +E IGYQ+  ++
Sbjct: 690 PLVEKTSERIEEIGYQVSGIK 710


>ref|NP_243340.1| BH2474~unknown conserved protein in B. subtilis [Bacillus
           halodurans]
 pir||B83959 hypothetical protein BH2474 [imported] - Bacillus halodurans
           (strain C-125)
 dbj|BAB06193.1| BH2474~unknown conserved protein in B. subtilis [Bacillus
           halodurans]
          Length = 575

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 44/78 (56%)

Query: 35  TDRTAPFAQVTMFLPLRGPDGQETASVHIQSRRGRKGELDAANCRLWFDLDMKQLGQTLV 94
           ++ + P  Q  + LPL     Q   ++H + +R   G+L   +CR+ F L +  L +T+V
Sbjct: 441 SETSGPITQTAIQLPLMLGSFQTDLTIHWEGKRQADGQLSPDHCRILFYLSLAHLKETIV 500

Query: 95  DVQVVDRIVSLKLHNDTP 112
           DVQ+  RI+++ + N+ P
Sbjct: 501 DVQIQHRILAVTIFNEHP 518


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.317    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 196,383,230
Number of extensions: 6246083
Number of successful extensions: 14482
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 14483
Number of HSP's successfully gapped: 2
Length of query: 176
Length of database: 757,237,578
Length adjustment: 117
Effective length of query: 59
Effective length of database: 439,570,995
Effective search space: 25934688705
Effective search space used: 25934688705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 121 (51.2 bits)