BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0067.p (466 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_243329.1| ATP-dependent Clp protease (heat-shock protein)... 574 e-162 ref|NP_389498.1| ATP-dependent Clp protease-like [Bacillus subti... 560 e-158 ref|NP_846210.1| ATP-dependent hsl protease, ATP-binding subunit... 544 e-153 ref|NP_833548.1| ATP-dependent hsl protease ATP-binding subunit ... 542 e-153 ref|NP_657797.1| AAA, ATPase family associated with various cell... 542 e-153 >ref|NP_243329.1| ATP-dependent Clp protease (heat-shock protein) [Bacillus halodurans] sp|Q9KA27|HSLU_BACHD ATP-dependent hsl protease ATP-binding subunit hslU pir||G83957 probable heat-shock protein clpY [similarity] - Bacillus halodurans (strain C-125) dbj|BAB06182.1| ATP-dependent Clp protease (heat-shock protein) [Bacillus halodurans] Length = 464 Score = 574 bits (1479), Expect = e-162, Method: Compositional matrix adjust. Identities = 288/461 (62%), Positives = 346/461 (75%), Gaps = 1/461 (0%) Query: 6 LTPRQIVAELDKYIVGQKQAKKSVAVAXXXXXXXXXXXXXXXDEVVPKNILMIGPTGVGK 65 LTPRQIV LD+YIVGQ+ AK+SVA+A DE+ PKNILMIGPTGVGK Sbjct: 5 LTPRQIVERLDQYIVGQEGAKRSVAIALRNRYRRFQLEDKLRDEITPKNILMIGPTGVGK 64 Query: 66 TEIARRLAKLVNAPFIKVEATKFTEVGYVGRDVESMVRDLVETSIRMVKLERTEKVKDRA 125 TEIARRLAKLV APF+KVEATKFTEVGYVGRDVESM+RDLVETS+R+VK E+ + VK +A Sbjct: 65 TEIARRLAKLVGAPFVKVEATKFTEVGYVGRDVESMIRDLVETSVRLVKEEKMKGVKKQA 124 Query: 126 EELANERIVSILVPGGSKNKSQRNPFEMIFXXXXXXXXXXXXXXXXXSLSERRRGVKFKL 185 EE AN+RIV +LVP K ++ +NP EM+F +L+ERRR + +L Sbjct: 125 EEQANQRIVELLVPAKKKTQAYKNPLEMLFGQQQENTDHQETSAEQDTLTERRRRMSHQL 184 Query: 186 LAGQLXXXXXXXXXXXTAPTMLDMFAGQGNDQMGMNMQEMFGSXXXXXXXXXXXXIREAR 245 G+L P DM G G +QMGMNMQEM G+ +REAR Sbjct: 185 ALGELEDHYVTVEVEEQTPQFFDMLQGSGMEQMGMNMQEMLGNMMPKKRKKRKLTVREAR 244 Query: 246 KVLIQDEAAKLIDMDDVIQESVARAEQSGIIFIDEIDKVASQGKGSGPDVSREGVQRDIL 305 +VL ++EA KLIDMD+V QE+V++AEQ GI+FIDEIDK+A +G+ S DVSREGVQRDIL Sbjct: 245 RVLTEEEAQKLIDMDEVTQEAVSKAEQLGIVFIDEIDKIAGKGQQSA-DVSREGVQRDIL 303 Query: 306 PIVEGSTVMTKYGPVKTDYVLFMAAGAFHVAKPSDLIPELQGRFPIRVELSSLTLEDFVS 365 PIVEGSTV+TKYGPV TD++LF+ AGAFHVAKPSDLIPELQGRFPIRVELS+LT++DFV Sbjct: 304 PIVEGSTVVTKYGPVSTDHMLFIGAGAFHVAKPSDLIPELQGRFPIRVELSNLTVDDFVR 363 Query: 366 ILTEPENALTKQYVNLLQTENIEVQFQKEAIYEIARIAASVNQNMENIGARRLHTILEKL 425 IL EP+NAL KQY LL+TE I++ F EA+++IA IA VNQ ENIGARRLHT+LE+L Sbjct: 364 ILVEPDNALLKQYAALLETEGIKIVFTDEAVHKIATIATEVNQETENIGARRLHTLLERL 423 Query: 426 LEDLSFEAPELTLETMVITPEYVREKLAGIAQDRDLSQYIL 466 LEDLSFEAP++ LE +VITPEYV EKLA IA++RDLSQYIL Sbjct: 424 LEDLSFEAPDVNLEEIVITPEYVTEKLAAIAKNRDLSQYIL 464 >ref|NP_389498.1| ATP-dependent Clp protease-like [Bacillus subtilis] sp|P39778|HSLU_BACSU ATP-dependent hsl protease ATP-binding subunit hslU pir||E69601 ATP-dependent Clp proteinase-like protein clpY - Bacillus subtilis gb|AAB03371.1| CodX emb|CAB13489.1| two-component ATP-dependent protease (N-terminal serine protease) [Bacillus subtilis subsp. subtilis str. 168] Length = 467 Score = 560 bits (1444), Expect = e-158, Method: Compositional matrix adjust. Identities = 285/467 (61%), Positives = 344/467 (73%), Gaps = 1/467 (0%) Query: 1 MVNQSLTPRQIVAELDKYIVGQKQAKKSVAVAXXXXXXXXXXXXXXXDEVVPKNILMIGP 60 M + LTPRQIV LD+YIVGQ+ AKK+VAVA DEVVPKNILM+GP Sbjct: 1 MEKKPLTPRQIVDRLDQYIVGQQNAKKAVAVALRNRYRRSLLDEKLKDEVVPKNILMMGP 60 Query: 61 TGVGKTEIARRLAKLVNAPFIKVEATKFTEVGYVGRDVESMVRDLVETSIRMVKLERTEK 120 TGVGKTEIARR+AKL APFIK+EATKFTEVGYVGRDVESMVRDLVETS+R++K E+ + Sbjct: 61 TGVGKTEIARRIAKLSGAPFIKIEATKFTEVGYVGRDVESMVRDLVETSVRLIKEEKMNE 120 Query: 121 VKDRAEELANERIVSILVPGGSKNKSQRNPFEMIFXXXXXXXXXXXXXXXXXSLSERRRG 180 VK++AEE AN+RIV +LVPG K +NPFEM F ++ E+R+ Sbjct: 121 VKEQAEENANKRIVRLLVPGKKKQSGVKNPFEMFFGGSQPNGEDEAESQEEANIEEKRKR 180 Query: 181 VKFKLLAGQLXXXXXXXXXXXTAPTMLDMFAGQGNDQMGMNMQEMFGSXXXXXXXXXXXX 240 + +L G+L P+M DM G G +QMGMNMQ+ Sbjct: 181 MAHQLALGELEDYYVTVEVEEQQPSMFDMLQGSGMEQMGMNMQDALSGLMPKKKKRRKMT 240 Query: 241 IREARKVLIQDEAAKLIDMDDVIQESVARAEQSGIIFIDEIDKVASQG-KGSGPDVSREG 299 +REARKVL +EA+KLIDMD+V QE+V RAE+SGIIFIDEIDK+A G S DVSREG Sbjct: 241 VREARKVLTNEEASKLIDMDEVGQEAVQRAEESGIIFIDEIDKIAKNGGASSSADVSREG 300 Query: 300 VQRDILPIVEGSTVMTKYGPVKTDYVLFMAAGAFHVAKPSDLIPELQGRFPIRVELSSLT 359 VQRDILPIVEGSTV+TKYG VKTD+VLF+AAGAFH+AKPSDLIPELQGRFPIRVEL+ LT Sbjct: 301 VQRDILPIVEGSTVVTKYGSVKTDHVLFIAAGAFHMAKPSDLIPELQGRFPIRVELNKLT 360 Query: 360 LEDFVSILTEPENALTKQYVNLLQTENIEVQFQKEAIYEIARIAASVNQNMENIGARRLH 419 ++DFV IL EP+NAL KQY LLQTE I ++F EAI++IA +A VNQ+ +NIGARRLH Sbjct: 361 VDDFVRILVEPDNALLKQYQALLQTEGISLEFSDEAIHKIAEVAYHVNQDTDNIGARRLH 420 Query: 420 TILEKLLEDLSFEAPELTLETMVITPEYVREKLAGIAQDRDLSQYIL 466 TILE+LLEDLSFEAP++T+E + ITP+YV EKL IA+++DLSQ+IL Sbjct: 421 TILERLLEDLSFEAPDVTMEKITITPQYVEEKLGTIAKNKDLSQFIL 467 >ref|NP_846210.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus anthracis str. Ames] gb|AAP27696.1| ATP-dependent hsl protease, ATP-binding subunit hslU [Bacillus anthracis str. Ames] Length = 463 Score = 544 bits (1401), Expect = e-153, Method: Compositional matrix adjust. Identities = 283/462 (61%), Positives = 336/462 (72%), Gaps = 4/462 (0%) Query: 6 LTPRQIVAELDKYIVGQKQAKKSVAVAXXXXXXXXXXXXXXXDEVVPKNILMIGPTGVGK 65 TPRQIV +LD+YI+GQK AKK+VAVA DE+ PKNILMIGPTGVGK Sbjct: 5 FTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPTGVGK 64 Query: 66 TEIARRLAKLVNAPFIKVEATKFTEVGYVGRDVESMVRDLVETSIRMVKLERTEKVKDRA 125 TE+ARR+AKLV APFIKVEATKFTEVGYVGRDVESMVRDLVETS+R+VK E KV+D+A Sbjct: 65 TEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKVQDKA 124 Query: 126 EELANERIVSILVPGGSKNKSQRNPFEMIFXXXXXXXXXXXXXXXXXSLSERRRGVKFKL 185 EE AN+R+V ILVP K +NP EM+F + ++R+ V+ KL Sbjct: 125 EEQANQRLVEILVPSPEKQSGFKNPLEMLFGGTQNSNQTTDSQEDV-EIEKKRQDVERKL 183 Query: 186 LAGQLXXXXXXXXXXXTAPTMLDMFAGQGNDQMGMNMQEMFGSXXXXXXXXXXXXIREAR 245 AG L +M DM G G +QMGMN Q+ GS ++EAR Sbjct: 184 AAGLLEDEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFMPKKTKKRKLSVKEAR 243 Query: 246 KVLIQDEAAKLIDMDDVIQESVARAEQSGIIFIDEIDKVASQGKGSGP-DVSREGVQRDI 304 KVL +EA +LIDMD+V QE+V RAEQ GIIFIDEIDK+A GK S DVSREGVQRDI Sbjct: 244 KVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIA--GKQSNSVDVSREGVQRDI 301 Query: 305 LPIVEGSTVMTKYGPVKTDYVLFMAAGAFHVAKPSDLIPELQGRFPIRVELSSLTLEDFV 364 LPIVEGS V TKYG VKTDY+LF+AAGAFH++KPSDLIPELQGRFPIRVEL+ L+ +DFV Sbjct: 302 LPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTDDFV 361 Query: 365 SILTEPENALTKQYVNLLQTENIEVQFQKEAIYEIARIAASVNQNMENIGARRLHTILEK 424 IL EP+NAL KQY+ LL TE IE++F EAI +IA IA VNQ+ +NIGARRLHTI+EK Sbjct: 362 KILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTIMEK 421 Query: 425 LLEDLSFEAPELTLETMVITPEYVREKLAGIAQDRDLSQYIL 466 LLEDLSFEA E+TLE + ITP+YV EKLA IA+++D+SQ+IL Sbjct: 422 LLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463 >ref|NP_833548.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus ATCC 14579] gb|AAP10749.1| ATP-dependent hsl protease ATP-binding subunit hslU [Bacillus cereus ATCC 14579] Length = 463 Score = 542 bits (1397), Expect = e-153, Method: Compositional matrix adjust. Identities = 282/462 (61%), Positives = 336/462 (72%), Gaps = 4/462 (0%) Query: 6 LTPRQIVAELDKYIVGQKQAKKSVAVAXXXXXXXXXXXXXXXDEVVPKNILMIGPTGVGK 65 TPRQIV +LD+YI+GQK AKK+VAVA DE+ PKNILMIGPTGVGK Sbjct: 5 FTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPTGVGK 64 Query: 66 TEIARRLAKLVNAPFIKVEATKFTEVGYVGRDVESMVRDLVETSIRMVKLERTEKVKDRA 125 TE+ARR+AKLV APFIKVEATKFTEVGYVGRDVESMVRDLVETS+R+VK E KV+D+A Sbjct: 65 TEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKVQDKA 124 Query: 126 EELANERIVSILVPGGSKNKSQRNPFEMIFXXXXXXXXXXXXXXXXXSLSERRRGVKFKL 185 EE AN+R+V ILVP K +NP EM+F + ++R+ V+ KL Sbjct: 125 EEQANQRLVEILVPSPEKQSGFKNPLEMLFGGAQNSNQTSDTQEDV-EIEKKRQDVERKL 183 Query: 186 LAGQLXXXXXXXXXXXTAPTMLDMFAGQGNDQMGMNMQEMFGSXXXXXXXXXXXXIREAR 245 AG L +M DM G G +QMGMN Q+ GS ++EAR Sbjct: 184 AAGLLEEEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFMPKKTKKRKLSVKEAR 243 Query: 246 KVLIQDEAAKLIDMDDVIQESVARAEQSGIIFIDEIDKVASQGKGSGP-DVSREGVQRDI 304 K+L +EA +LIDMD+V QE+V RAEQ GIIFIDEIDK+A GK S DVSREGVQRDI Sbjct: 244 KLLSNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIA--GKQSNSVDVSREGVQRDI 301 Query: 305 LPIVEGSTVMTKYGPVKTDYVLFMAAGAFHVAKPSDLIPELQGRFPIRVELSSLTLEDFV 364 LPIVEGS V TKYG VKTDY+LF+AAGAFH++KPSDLIPELQGRFPIRVEL+ L+ +DFV Sbjct: 302 LPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTDDFV 361 Query: 365 SILTEPENALTKQYVNLLQTENIEVQFQKEAIYEIARIAASVNQNMENIGARRLHTILEK 424 IL EP+NAL KQY+ LL TE IE++F EAI +IA IA VNQ+ +NIGARRLHTI+EK Sbjct: 362 KILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTIMEK 421 Query: 425 LLEDLSFEAPELTLETMVITPEYVREKLAGIAQDRDLSQYIL 466 LLEDLSFEA E+TLE + ITP+YV EKLA IA+++D+SQ+IL Sbjct: 422 LLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQFIL 463 >ref|NP_657797.1| AAA, ATPase family associated with various cellular activities (AAA) [Bacillus anthracis A2012] Length = 463 Score = 542 bits (1397), Expect = e-153, Method: Compositional matrix adjust. Identities = 283/462 (61%), Positives = 335/462 (72%), Gaps = 4/462 (0%) Query: 6 LTPRQIVAELDKYIVGQKQAKKSVAVAXXXXXXXXXXXXXXXDEVVPKNILMIGPTGVGK 65 TPRQIV +LD+YI+GQK AKK+VAVA DE+ PKNILMIGPTGVGK Sbjct: 5 FTPRQIVEKLDQYIIGQKDAKKAVAVALRNRYRRSKLAENLRDEIAPKNILMIGPTGVGK 64 Query: 66 TEIARRLAKLVNAPFIKVEATKFTEVGYVGRDVESMVRDLVETSIRMVKLERTEKVKDRA 125 TE+ARR+AKLV APFIKVEATKFTEVGYVGRDVESMVRDLVETS+R+VK E KV+D+A Sbjct: 65 TEVARRMAKLVGAPFIKVEATKFTEVGYVGRDVESMVRDLVETSVRIVKEEMVVKVQDKA 124 Query: 126 EELANERIVSILVPGGSKNKSQRNPFEMIFXXXXXXXXXXXXXXXXXSLSERRRGVKFKL 185 EE AN+R+V ILVP K +NP EM+F + ++R+ V+ KL Sbjct: 125 EEQANQRLVEILVPSPEKQSGFKNPLEMLFGGTQNSNQTTDSQEDV-EIEKKRQDVERKL 183 Query: 186 LAGQLXXXXXXXXXXXTAPTMLDMFAGQGNDQMGMNMQEMFGSXXXXXXXXXXXXIREAR 245 AG L +M DM G G +QMGMN Q+ GS ++EAR Sbjct: 184 AAGLLEDEIVSIEVTEQQSSMFDMLQGTGMEQMGMNFQDALGSFMPKKTKKRKLSVKEAR 243 Query: 246 KVLIQDEAAKLIDMDDVIQESVARAEQSGIIFIDEIDKVASQGKGSGP-DVSREGVQRDI 304 KVL +EA +LIDMD+V QE+V RAEQ GIIFIDEIDK+A GK S DVSREGVQRDI Sbjct: 244 KVLTNEEAQRLIDMDEVTQEAVYRAEQLGIIFIDEIDKIA--GKQSNSVDVSREGVQRDI 301 Query: 305 LPIVEGSTVMTKYGPVKTDYVLFMAAGAFHVAKPSDLIPELQGRFPIRVELSSLTLEDFV 364 LPIVEGS V TKYG VKTDY+LF+AAGAFH++KPSDLIPELQGRFPIRVEL+ L+ +DFV Sbjct: 302 LPIVEGSNVATKYGSVKTDYILFVAAGAFHMSKPSDLIPELQGRFPIRVELTKLSTDDFV 361 Query: 365 SILTEPENALTKQYVNLLQTENIEVQFQKEAIYEIARIAASVNQNMENIGARRLHTILEK 424 IL EP+NAL KQY+ LL TE IE++F EAI +IA IA VNQ+ +NIGARRLHTI+EK Sbjct: 362 KILIEPDNALIKQYMALLATEGIEIEFSDEAIRKIAEIAYQVNQDTDNIGARRLHTIMEK 421 Query: 425 LLEDLSFEAPELTLETMVITPEYVREKLAGIAQDRDLSQYIL 466 LLEDLSFEA E+TLE + ITP+YV EKLA IA+++D+SQ IL Sbjct: 422 LLEDLSFEASEITLEKITITPQYVEEKLATIAKNKDVSQIIL 463 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.134 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 527,012,489 Number of extensions: 18749276 Number of successful extensions: 88602 Number of sequences better than 1.0e-05: 1503 Number of HSP's gapped: 87567 Number of HSP's successfully gapped: 1971 Length of query: 466 Length of database: 757,237,578 Length adjustment: 129 Effective length of query: 337 Effective length of database: 406,989,807 Effective search space: 137155564959 Effective search space used: 137155564959 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)