BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0060.p (437 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_243321.1| flagellar-specific ATP synthase [Bacillus halod... 546 e-154 ref|ZP_00059961.1| COG1157: Flagellar biosynthesis/type III secr... 540 e-152 ref|NP_348777.1| Flagellar-Type ATPase [Clostridium acetobutylic... 528 e-148 ref|NP_623057.1| Flagellar biosynthesis/type III secretory pathw... 525 e-147 ref|NP_692479.1| flagellar-specific H(+)-transporting ATP syntha... 523 e-147 >ref|NP_243321.1| flagellar-specific ATP synthase [Bacillus halodurans] pir||G83956 flagellar-specific ATP synthase fliI [imported] - Bacillus halodurans (strain C-125) dbj|BAB06174.1| flagellar-specific ATP synthase [Bacillus halodurans] Length = 437 Score = 546 bits (1407), Expect = e-154, Method: Compositional matrix adjust. Identities = 266/416 (63%), Positives = 331/416 (79%) Query: 21 GKVTQVIGLMVESEGPDASIGDVCYIYPAKGNKPLQAEVVGFRDNKVLLMPLGELQAIGP 80 GKVT+VIGL +E++GP ASIG++CYI K + AEVVGF++ +VLLMPL I P Sbjct: 20 GKVTRVIGLTIEAKGPQASIGELCYILVGKQGTKVMAEVVGFKEERVLLMPLNGTAEIAP 79 Query: 81 GCDVVGTGKPLSVQVGSELLGKVLDGLGQPLDGSLIPARMPHSSTFNIPSNPLNRPRVQE 140 G V GTG+PL V+VG L+G V+DG G+PL G +P + T N P NP++RPR++E Sbjct: 80 GSLVEGTGRPLQVKVGYSLIGHVIDGCGRPLTGEALPNGLTPYPTDNPPPNPISRPRIKE 139 Query: 141 PISIGVRAIDGLLTIGKGQRVGIFAGSGVGKSTLMGMIARNTSADVNVIALIGERGREVL 200 + +GVRAIDGLLT+GKGQRVGIFAGSGVGKSTL+ M+A+N +AD+N+IALIGERGREV Sbjct: 140 AMHLGVRAIDGLLTVGKGQRVGIFAGSGVGKSTLLAMLAKNAAADLNIIALIGERGREVK 199 Query: 201 DFIERDLGPEGLQRSVVVVATSDQPALIRIKGALIATTIAEYFRDRGLNVMLMMDSVTRY 260 DFIERDLG +GL+RS++VVATSDQPAL+RIKGA+ AT +AEYFRD+GL+V LMMDSVTR+ Sbjct: 200 DFIERDLGEDGLRRSIIVVATSDQPALMRIKGAMTATALAEYFRDQGLHVNLMMDSVTRF 259 Query: 261 AMAQREVGLAVGEPPAMRGYTPSVFASLPKLLERAGTGPTGSITAFYTVLVDGDDMNEPI 320 AMAQRE+GLAVGEPP +GYTPSVFA LPKLLERAGT GSIT FYTVLVDGDD+NEPI Sbjct: 260 AMAQREIGLAVGEPPTTKGYTPSVFALLPKLLERAGTNGKGSITGFYTVLVDGDDLNEPI 319 Query: 321 ADAVRGILDGHIVLNRNIANKGHFPAIDVLSSISRVMKDIAPEEQIAAAENVKRLMAVYK 380 +D VRGILDGH VL+R +ANKGH+PAI++L S+SRVM DI +EQ AAE+V+ L++VYK Sbjct: 320 SDTVRGILDGHFVLDRELANKGHYPAINILKSVSRVMNDIVTDEQKRAAEHVRSLLSVYK 379 Query: 381 DSEDLINIGAYQRGSNAQIDESIHYIDSIWNFTKQKVNEKVTLAEVQESLISQFSR 436 +SEDLINIGAY+RGS+ QIDE+I + +F +Q +E + LI F + Sbjct: 380 ESEDLINIGAYKRGSSKQIDEAIERQPEVISFLRQNTDEVAIAEHSIQQLIQAFGK 435 >ref|ZP_00059961.1| COG1157: Flagellar biosynthesis/type III secretory pathway ATPase [Clostridium thermocellum ATCC 27405] Length = 437 Score = 540 bits (1392), Expect = e-152, Method: Compositional matrix adjust. Identities = 263/427 (61%), Positives = 336/427 (78%), Gaps = 6/427 (1%) Query: 2 LDSGRYKEQLRNFDPVRINGKVTQVIGLMVESEGPDASIGDVCYIYPAKGNKPLQAEVVG 61 +D +Y + L N D + GKV++V+GL +ES GP+ +IG++C I + NK + AE VG Sbjct: 4 IDFSKYYDVLDNRDFIEYTGKVSKVVGLTIESNGPEVNIGEICKINALRENKVISAEAVG 63 Query: 62 FRDNKVLLMPLGELQAIGPGCDVVGTGKPLSVQVGSELLGKVLDGLGQPLDGSLIPARMP 121 FRDNKVLLMPLG++ IGPG VV T LSV VG+ L+G+V+DG+G+P+DG + Sbjct: 64 FRDNKVLLMPLGDMNGIGPGSKVVATRDYLSVGVGNALIGRVIDGMGRPIDGK---GEIV 120 Query: 122 HSSTF---NIPSNPLNRPRVQEPISIGVRAIDGLLTIGKGQRVGIFAGSGVGKSTLMGMI 178 +T+ N P +PL R R++EP+ +GV+ IDGLLT+GKGQRVGIFAGSGVGKSTL+GMI Sbjct: 121 TETTYPVENKPPHPLKRNRIKEPLPLGVKTIDGLLTVGKGQRVGIFAGSGVGKSTLIGMI 180 Query: 179 ARNTSADVNVIALIGERGREVLDFIERDLGPEGLQRSVVVVATSDQPALIRIKGALIATT 238 ARNT ADVNVIALIGERGREV +FIE+DL EGL+RSVVVVATSDQPALIR+KGAL+AT Sbjct: 181 ARNTKADVNVIALIGERGREVREFIEKDLKEEGLKRSVVVVATSDQPALIRLKGALMATA 240 Query: 239 IAEYFRDRGLNVMLMMDSVTRYAMAQREVGLAVGEPPAMRGYTPSVFASLPKLLERAGTG 298 IAEYFRD+G +V+L+MDS+TR+AMAQRE+GL++GEPP RGYTPSVF+ +PKLLERAG Sbjct: 241 IAEYFRDQGKDVLLLMDSLTRFAMAQREIGLSIGEPPVSRGYTPSVFSIMPKLLERAGNS 300 Query: 299 PTGSITAFYTVLVDGDDMNEPIADAVRGILDGHIVLNRNIANKGHFPAIDVLSSISRVMK 358 +GSIT YTVLVDGDD+ EP+ D RGILDGHIVL+RN+ANK +PAIDVL+S+SRVM Sbjct: 301 QSGSITGLYTVLVDGDDLTEPVTDTARGILDGHIVLSRNLANKNQYPAIDVLASVSRVMP 360 Query: 359 DIAPEEQIAAAENVKRLMAVYKDSEDLINIGAYQRGSNAQIDESIHYIDSIWNFTKQKVN 418 DI +E A ++K+ MA+Y+++EDLIN+GAY +GSN +ID +I ID I F KQ V+ Sbjct: 361 DIVDDEHQKIANDIKKTMAIYREAEDLINVGAYAKGSNEKIDYAIEVIDKIQEFIKQGVH 420 Query: 419 EKVTLAE 425 E+ + E Sbjct: 421 ERYSYEE 427 >ref|NP_348777.1| Flagellar-Type ATPase [Clostridium acetobutylicum] pir||B97166 flagellar-Type ATPase [imported] - Clostridium acetobutylicum gb|AAK80117.1| Flagellar-Type ATPase [Clostridium acetobutylicum] Length = 438 Score = 528 bits (1359), Expect = e-148, Method: Compositional matrix adjust. Identities = 262/426 (61%), Positives = 325/426 (76%), Gaps = 2/426 (0%) Query: 10 QLRNFDPVRINGKVTQVIGLMVESEGPDASIGDVCYIYPAKGNKPLQAEVVGFRDNKVLL 69 Q+R + G V +V+GL +E +G A +G+VC IY + N+P++ EVVGF + +V+L Sbjct: 12 QIRECKTEYVEGIVNKVVGLTIEVDGIKAFVGEVCIIYNER-NRPIKCEVVGFNEGRVIL 70 Query: 70 MPLGELQAIGPGCDVVGTGKPLSVQVGSELLGKVLDGLGQPLDGSLIPARMPHSSTFNIP 129 MPLGEL+ I PGC VV TG PLSV+ ELLGKVLDGLG PL G + + + + P Sbjct: 71 MPLGELEGISPGCRVVQTGIPLSVKCSDELLGKVLDGLGAPLRGEEVKSGVLYQLDRE-P 129 Query: 130 SNPLNRPRVQEPISIGVRAIDGLLTIGKGQRVGIFAGSGVGKSTLMGMIARNTSADVNVI 189 +PL R R++ I GVRAIDG LT G+GQR+GIFAGSGVGKST +GMIAR ADVNVI Sbjct: 130 PDPLKRRRIKNSIETGVRAIDGFLTCGEGQRIGIFAGSGVGKSTTLGMIAREAKADVNVI 189 Query: 190 ALIGERGREVLDFIERDLGPEGLQRSVVVVATSDQPALIRIKGALIATTIAEYFRDRGLN 249 ALIGERGREVLDFIE+DLG EG++RSV+V ATSD+PAL+R+KGA AT IAEYFRD+G Sbjct: 190 ALIGERGREVLDFIEKDLGEEGMKRSVIVCATSDKPALVRLKGAFTATAIAEYFRDKGKK 249 Query: 250 VMLMMDSVTRYAMAQREVGLAVGEPPAMRGYTPSVFASLPKLLERAGTGPTGSITAFYTV 309 V+LMMDSVTR+AMAQREVGLA GEPPA +GYTPSVFA LP+L+ER+G TGSITAFYTV Sbjct: 250 VILMMDSVTRFAMAQREVGLATGEPPATKGYTPSVFAMLPRLMERSGMAETGSITAFYTV 309 Query: 310 LVDGDDMNEPIADAVRGILDGHIVLNRNIANKGHFPAIDVLSSISRVMKDIAPEEQIAAA 369 LVDGDD NEPIADAVR ILDGHIVL+RN+A + H+PAIDVLSS+SR+M +IA + AA Sbjct: 310 LVDGDDFNEPIADAVRSILDGHIVLSRNLAAQNHYPAIDVLSSVSRLMSEIADSDHKKAA 369 Query: 370 ENVKRLMAVYKDSEDLINIGAYQRGSNAQIDESIHYIDSIWNFTKQKVNEKVTLAEVQES 429 + L+A YK +EDLINIGAY +G+N ++D +I+Y D I ++ KQ + EK + E S Sbjct: 370 GLARDLLAEYKKNEDLINIGAYVKGTNNKVDAAINYNDRIISYLKQGIEEKSSFEESINS 429 Query: 430 LISQFS 435 L S F+ Sbjct: 430 LKSMFN 435 >ref|NP_623057.1| Flagellar biosynthesis/type III secretory pathway ATPase [Thermoanaerobacter tengcongensis] gb|AAM24661.1| Flagellar biosynthesis/type III secretory pathway ATPase [Thermoanaerobacter tengcongensis] Length = 437 Score = 525 bits (1351), Expect = e-147, Method: Compositional matrix adjust. Identities = 261/432 (60%), Positives = 330/432 (76%), Gaps = 3/432 (0%) Query: 6 RYKEQLRNFDPVRINGKVTQVIGLMVESEGPDASIGDVCYIYPAKGNKPLQAEVVGFRDN 65 +Y + LR V GKV+QVIGL +ES GP ++IG++CYI GN+ L AEVVGF++ Sbjct: 8 KYSKILREKRLVGYYGKVSQVIGLTIESVGPLSNIGEICYIKTIDGNEVL-AEVVGFKEE 66 Query: 66 KVLLMPLGELQAIGPGCDVVGTGKPLSVQVGSELLGKVLDGLGQPLDGSLIPARMPHS-S 124 KV LMPLG ++ IGPG V+ TG+ L V VG LLG+VLDGLG P+DG P + S Sbjct: 67 KVYLMPLGNMEGIGPGSKVIATGQTLKVNVGKSLLGRVLDGLGNPIDGKG-PLKYEKSIP 125 Query: 125 TFNIPSNPLNRPRVQEPISIGVRAIDGLLTIGKGQRVGIFAGSGVGKSTLMGMIARNTSA 184 N P +PL R R++E + +G++AIDGLLT GKGQR+GIFAGSGVGKSTL+GM+ARN A Sbjct: 126 VNNTPPDPLERKRIREVMPLGIKAIDGLLTCGKGQRIGIFAGSGVGKSTLLGMMARNAKA 185 Query: 185 DVNVIALIGERGREVLDFIERDLGPEGLQRSVVVVATSDQPALIRIKGALIATTIAEYFR 244 D+NVIALIGERGREV +FIE+DLG EGL+RSVVVVATSD PAL+R+KGA+ AT IAEYFR Sbjct: 186 DLNVIALIGERGREVNEFIEKDLGEEGLKRSVVVVATSDTPALVRVKGAMTATAIAEYFR 245 Query: 245 DRGLNVMLMMDSVTRYAMAQREVGLAVGEPPAMRGYTPSVFASLPKLLERAGTGPTGSIT 304 D+GL+V+LMMDS+TR+AMAQRE+GL++GE P RGYTPSVF+ LPKLLER+G+ GSIT Sbjct: 246 DQGLDVLLMMDSITRFAMAQREIGLSIGEAPVSRGYTPSVFSVLPKLLERSGSSQKGSIT 305 Query: 305 AFYTVLVDGDDMNEPIADAVRGILDGHIVLNRNIANKGHFPAIDVLSSISRVMKDIAPEE 364 A YTVLVDGDD+NEPIADAVRGILDGHIVL+R +ANK H+PAIDVL+S+SRV+ DI +E Sbjct: 306 ALYTVLVDGDDLNEPIADAVRGILDGHIVLSRKLANKNHYPAIDVLASVSRVINDIITDE 365 Query: 365 QIAAAENVKRLMAVYKDSEDLINIGAYQRGSNAQIDESIHYIDSIWNFTKQKVNEKVTLA 424 K ++A Y ++EDLINIGAY G+N +IDE+I + + +F +QK++E Sbjct: 366 HKELVAKFKNILATYAEAEDLINIGAYNFGTNPKIDEAIELNEKMNSFLRQKIDEAYDFE 425 Query: 425 EVQESLISQFSR 436 ++ L R Sbjct: 426 TTKKLLAKSLER 437 >ref|NP_692479.1| flagellar-specific H(+)-transporting ATP synthase [Oceanobacillus iheyensis HTE831] dbj|BAC13514.1| flagellar-specific H(+)-transporting ATP synthase [Oceanobacillus iheyensis HTE831] Length = 439 Score = 523 bits (1348), Expect = e-147, Method: Compositional matrix adjust. Identities = 259/427 (60%), Positives = 332/427 (77%), Gaps = 4/427 (0%) Query: 1 MLDSGRYKEQLRNFDPVRINGKVTQVIGLMVESEGPDASIGDVCYI-YPAKGNKPLQAEV 59 M+D +Y++ + D + GKV +V+GLM+ESEGP A+IG+VC I A + L AEV Sbjct: 1 MID--QYRDVIAKVDTYKRYGKVIRVVGLMIESEGPTANIGEVCNIKTSANTDHALLAEV 58 Query: 60 VGFRDNKVLLMPLGELQAIGPGCDVVGTGKPLSVQVGSELLGKVLDGLGQPL-DGSLIPA 118 VGFR+ K++LMP E+ +GPGC V TGKPL+V+VG L+GKVL+ LG+PL D +P Sbjct: 59 VGFRNEKIILMPYTEVTEVGPGCLVEATGKPLTVKVGRGLVGKVLNSLGKPLNDTEELPK 118 Query: 119 RMPHSSTFNIPSNPLNRPRVQEPISIGVRAIDGLLTIGKGQRVGIFAGSGVGKSTLMGMI 178 + + T P NPL RP ++ P+ +GV+AID LLT+G+GQRVG+FAGSGVGKSTL+GMI Sbjct: 119 GLANFMTEQTPPNPLERPPIRTPLQVGVKAIDSLLTMGEGQRVGLFAGSGVGKSTLLGMI 178 Query: 179 ARNTSADVNVIALIGERGREVLDFIERDLGPEGLQRSVVVVATSDQPALIRIKGALIATT 238 ARN+SA++NVIALIGERGREV +FIE DLGPEGL++S+VVVATSDQPAL+RIKGA AT Sbjct: 179 ARNSSAEINVIALIGERGREVREFIENDLGPEGLKKSIVVVATSDQPALMRIKGAYTATA 238 Query: 239 IAEYFRDRGLNVMLMMDSVTRYAMAQREVGLAVGEPPAMRGYTPSVFASLPKLLERAGTG 298 I+EYFRD G V LMMDSVTR AMAQRE+GLAVGEPP +GYTPSVF+ LPKLLER GT Sbjct: 239 ISEYFRDLGYKVNLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFSILPKLLERTGTN 298 Query: 299 PTGSITAFYTVLVDGDDMNEPIADAVRGILDGHIVLNRNIANKGHFPAIDVLSSISRVMK 358 G+IT FYTVLVDGDDMNEPIADAVRGILDGH +L+R +A +G FPAI+VL SISRVM Sbjct: 299 ANGTITGFYTVLVDGDDMNEPIADAVRGILDGHFILDRKLAERGQFPAINVLKSISRVMN 358 Query: 359 DIAPEEQIAAAENVKRLMAVYKDSEDLINIGAYQRGSNAQIDESIHYIDSIWNFTKQKVN 418 IA EE ++ +++L++ Y+++++LI IGAY++G+N +ID++I + I F KQ ++ Sbjct: 359 VIADEEHKEQSQTLRKLLSTYEENQELITIGAYKKGTNHEIDQAISFQPYILEFLKQGIH 418 Query: 419 EKVTLAE 425 EK T E Sbjct: 419 EKRTFDE 425 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 629,004,489 Number of extensions: 27669100 Number of successful extensions: 113575 Number of sequences better than 1.0e-05: 4908 Number of HSP's gapped: 100251 Number of HSP's successfully gapped: 4934 Length of query: 437 Length of database: 757,237,578 Length adjustment: 129 Effective length of query: 308 Effective length of database: 406,989,807 Effective search space: 125352860556 Effective search space used: 125352860556 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)