BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0054.p
         (39 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_951477.1| conserved hypothetical protein [Geobacter sulfu...    54   1e-06
ref|ZP_00080827.1| hypothetical protein [Geobacter metallireducens]    53   2e-06
ref|NP_970135.1| conserved hypothetical protein [Bdellovibrio ba...    51   9e-06

>ref|NP_951477.1| conserved hypothetical protein [Geobacter sulfurreducens PCA]
 gb|AAR33750.1| conserved hypothetical protein [Geobacter sulfurreducens PCA]
          Length = 128

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 31/38 (81%)

Query: 1   MKDMALIVSVANRTVVTAMDGNSMKDNVFTQIDSAVII 38
           + D AL+VSV NRTV+TAMD  SM+ NVFT IDSAVII
Sbjct: 91  LGDAALVVSVRNRTVITAMDRASMQGNVFTNIDSAVII 128


>ref|ZP_00080827.1| hypothetical protein [Geobacter metallireducens]
          Length = 129

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 30/38 (78%)

Query: 1   MKDMALIVSVANRTVVTAMDGNSMKDNVFTQIDSAVII 38
           + D AL+VSV NRTV+TAMD  SM+ NVFT IDSAV+ 
Sbjct: 92  LGDAALVVSVKNRTVITAMDRGSMQGNVFTNIDSAVVF 129


>ref|NP_970135.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
 emb|CAE78194.1| conserved hypothetical protein [Bdellovibrio bacteriovorus]
          Length = 144

 Score = 50.8 bits (120), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 30/38 (78%)

Query: 1   MKDMALIVSVANRTVVTAMDGNSMKDNVFTQIDSAVII 38
           M D ALIVSV N TVVT MD N++K+NVFT IDS V++
Sbjct: 107 MNDSALIVSVKNNTVVTVMDKNALKENVFTNIDSTVVL 144


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.319    0.127    0.318 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 38,403,721
Number of extensions: 571822
Number of successful extensions: 1486
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1486
Number of HSP's successfully gapped: 3
Length of query: 39
Length of database: 757,237,578
Length adjustment: 13
Effective length of query: 26
Effective length of database: 721,941,291
Effective search space: 18770473566
Effective search space used: 18770473566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 120 (50.8 bits)