BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0047.p
         (175 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_692491.1| flagellar protein [Oceanobacillus iheyensis HTE...    61   1e-08
ref|NP_243309.1| flagellar protein required for flagellar format...    57   1e-07

>ref|NP_692491.1| flagellar protein [Oceanobacillus iheyensis HTE831]
 dbj|BAC13526.1| flagellar protein required for flagellar formation [Oceanobacillus
           iheyensis HTE831]
          Length = 219

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 72/132 (54%), Gaps = 12/132 (9%)

Query: 36  RFLGRRNQTLMSGRSIRTLGALGLGPNKSIQIIELGGSLYLIGVGENISMMDKITDPAEV 95
           + LG+RN+   + +S+  +G + +G NKSIQI+ +G  +Y++GVG+N+ ++ +ITD   +
Sbjct: 96  KLLGKRNKLGSNMKSLENVGGISVGQNKSIQIVRIGNQIYMVGVGDNVQLLQEITDEETI 155

Query: 96  ALIISAFEDQSAGQNNFLAP-FIAKVRAKFRGEVPSQEIELNETSSFYETLQSKLALAPE 154
             I++  E QS    +FL   F + ++ K   E  S +       SF +  + +L     
Sbjct: 156 QHILNV-EQQSE---DFLGTNFTSLLKKKNSSENNSDQ-------SFEKLFEQELNSLKS 204

Query: 155 RKEKMEELLRDD 166
            + KM +  ++D
Sbjct: 205 NRNKMIQKYKED 216


>ref|NP_243309.1| flagellar protein required for flagellar formation [Bacillus
           halodurans]
 pir||C83955 flagellar protein required for flagellar formation fliZ [imported]
           - Bacillus halodurans (strain C-125)
 dbj|BAB06162.1| flagellar protein required for flagellar formation [Bacillus
           halodurans]
          Length = 228

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 76/131 (58%), Gaps = 1/131 (0%)

Query: 36  RFLGRRNQTLMSGRSIRTLGALGLGPNKSIQIIELGGSLYLIGVGENISMMDKITDPAEV 95
           RF+ +R+++  S ++++ LG + LG N+S+Q+I++G  L+++GVGE+I ++ +IT+  E 
Sbjct: 94  RFISQRSRSFKSTQALQNLGGVPLGSNRSVQLIKVGDRLFVVGVGESIQLLKEITNEQEK 153

Query: 96  ALIISAFEDQSAGQNNFLAPFIAKVR-AKFRGEVPSQEIELNETSSFYETLQSKLALAPE 154
             +++  +   A  +  +   +  V+    R    +++  L E   F + LQ +L+    
Sbjct: 154 EELLAKQQTIYADSHAPITKAMTWVQDLTKRNRSSAKDEPLKEGQPFKQLLQKQLSDVQS 213

Query: 155 RKEKMEELLRD 165
            +E++ + +R+
Sbjct: 214 TQERIRKAMRE 224


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.315    0.135    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 203,330,879
Number of extensions: 7046181
Number of successful extensions: 18508
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 18510
Number of HSP's successfully gapped: 3
Length of query: 175
Length of database: 757,237,578
Length adjustment: 117
Effective length of query: 58
Effective length of database: 439,570,995
Effective search space: 25495117710
Effective search space used: 25495117710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 121 (51.2 bits)