BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0045.p (89 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_389518.1| flagellar protein [Bacillus subtilis] >gi|54431... 99 4e-20 ref|NP_243307.1| flagellar protein required for flagellar format... 87 1e-16 ref|NP_623043.1| Flagellar biosynthesis/type III secretory pathw... 85 7e-16 ref|ZP_00183577.1| hypothetical protein Exigu100901 [Exiguobacte... 81 8e-15 ref|NP_692493.1| flagellar protein [Oceanobacillus iheyensis HTE... 80 1e-14 >ref|NP_389518.1| flagellar protein [Bacillus subtilis] sp|P35535|FLIQ_BACSU Flagellar biosynthetic protein fliQ pir||D41886 probable export protein fliQ precursor - Bacillus subtilis gb|AAA22454.1| flagellar protein [Bacillus subtilis] emb|CAB13509.1| flagellar protein [Bacillus subtilis subsp. subtilis str. 168] Length = 89 Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 47/89 (52%), Positives = 64/89 (71%) Query: 1 MNTEFIIGLAGQAVYLVLETSAPMXXXXXXXXXXXSIFQATTQIQEQTLAFIPKIVAVLL 60 M++EF+I +A +AVY+ L S P+ SIFQATTQIQEQTLAFIPKIVAVLL Sbjct: 1 MSSEFVISMAEKAVYVTLMISGPLLAIALLVGLIVSIFQATTQIQEQTLAFIPKIVAVLL 60 Query: 61 ALLLFGPWIITKLVDFTGQILGSLNMYIG 89 AL+ FGPW+++ ++ FT ++ +LN + G Sbjct: 61 ALIFFGPWMLSTILSFTTELFSNLNRFAG 89 >ref|NP_243307.1| flagellar protein required for flagellar formation [Bacillus halodurans] pir||A83955 flagellar protein required for flagellar formation fliQ [imported] - Bacillus halodurans (strain C-125) dbj|BAB06160.1| flagellar protein required for flagellar formation [Bacillus halodurans] Length = 89 Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/89 (50%), Positives = 64/89 (71%) Query: 1 MNTEFIIGLAGQAVYLVLETSAPMXXXXXXXXXXXSIFQATTQIQEQTLAFIPKIVAVLL 60 M+ +FIIG+A + V+ VL + P+ SIFQATTQIQEQTLAFIPKIV VL+ Sbjct: 1 MSVDFIIGIAERGVWTVLLVAGPLLLVALGLGLFVSIFQATTQIQEQTLAFIPKIVGVLV 60 Query: 61 ALLLFGPWIITKLVDFTGQILGSLNMYIG 89 +L+LFGPW++++L++F I +L+ +IG Sbjct: 61 SLVLFGPWMLSQLLNFAYSIFNNLHRFIG 89 >ref|NP_623043.1| Flagellar biosynthesis/type III secretory pathway protein [Thermoanaerobacter tengcongensis] gb|AAM24647.1| Flagellar biosynthesis/type III secretory pathway protein [Thermoanaerobacter tengcongensis] Length = 89 Score = 84.7 bits (208), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 41/88 (46%), Positives = 61/88 (69%) Query: 1 MNTEFIIGLAGQAVYLVLETSAPMXXXXXXXXXXXSIFQATTQIQEQTLAFIPKIVAVLL 60 M++ + L +A+ + L + PM SIFQATTQIQEQTL+F+PKIVAVLL Sbjct: 1 MSSSMAVDLGREALSVALTVATPMLAVALGVGLLISIFQATTQIQEQTLSFVPKIVAVLL 60 Query: 61 ALLLFGPWIITKLVDFTGQILGSLNMYI 88 +L+LFGPW++T LV++T ++ ++N +I Sbjct: 61 SLILFGPWMLTTLVNYTQRLFLNINNFI 88 >ref|ZP_00183577.1| hypothetical protein Exigu100901 [Exiguobacterium sp. 255-15] Length = 90 Score = 80.9 bits (198), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 44/84 (52%), Positives = 55/84 (65%) Query: 1 MNTEFIIGLAGQAVYLVLETSAPMXXXXXXXXXXXSIFQATTQIQEQTLAFIPKIVAVLL 60 M E II LA AV+ +L+ SAP+ SI QATTQIQEQTL+F+PKIVAV L Sbjct: 1 MTQEMIIQLASSAVWTLLKVSAPLLLVSLVVGLLVSILQATTQIQEQTLSFVPKIVAVFL 60 Query: 61 ALLLFGPWIITKLVDFTGQILGSL 84 AL+ FGPWI+ +L FT +I + Sbjct: 61 ALVFFGPWIMEELKTFTIEIFKQI 84 >ref|NP_692493.1| flagellar protein [Oceanobacillus iheyensis HTE831] dbj|BAC13528.1| flagellar protein required for flagellar formation [Oceanobacillus iheyensis HTE831] Length = 89 Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 43/89 (48%), Positives = 60/89 (67%) Query: 1 MNTEFIIGLAGQAVYLVLETSAPMXXXXXXXXXXXSIFQATTQIQEQTLAFIPKIVAVLL 60 M++E ++ LA Q V +L + P+ SIFQATTQIQEQTLAFIPKI+AVL+ Sbjct: 1 MSSELVLTLAEQGVVTILLITVPLLLLALGVGLLVSIFQATTQIQEQTLAFIPKIIAVLV 60 Query: 61 ALLLFGPWIITKLVDFTGQILGSLNMYIG 89 L+ FGPW++T +V+FT + +LN +G Sbjct: 61 GLVFFGPWMLTTIVEFTSNLYQNLNQIVG 89 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.327 0.142 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 92,569,266 Number of extensions: 2250795 Number of successful extensions: 7167 Number of sequences better than 1.0e-05: 99 Number of HSP's gapped: 7170 Number of HSP's successfully gapped: 99 Length of query: 89 Length of database: 757,237,578 Length adjustment: 58 Effective length of query: 31 Effective length of database: 599,761,836 Effective search space: 18592616916 Effective search space used: 18592616916 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 120 (50.8 bits)