BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0041.p (142 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_243304.1| flagella-associated protein [Bacillus haloduran... 171 5e-42 ref|NP_389521.1| flagella-associated protein [Bacillus subtilis]... 153 1e-36 ref|ZP_00183580.1| hypothetical protein Exigu101201 [Exiguobacte... 149 2e-35 ref|ZP_00059978.1| COG1298: Flagellar biosynthesis pathway, comp... 144 8e-34 ref|NP_692496.1| flagella-associated protein [Oceanobacillus ihe... 138 4e-32 >ref|NP_243304.1| flagella-associated protein [Bacillus halodurans] pir||F83954 flagella-associated protein flhA [imported] - Bacillus halodurans (strain C-125) dbj|BAB06157.1| flagella-associated protein [Bacillus halodurans] Length = 677 Score = 171 bits (433), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 78/140 (55%), Positives = 111/140 (79%) Query: 2 TIFETLADYGTYTKDPDVLTEYVRQSLSRQITQQFSQTGETLRVITVGPNLEKKISESVQ 61 TIFET+ADYG TKD D+LTEYVRQSLSRQI++QF+Q GE L V+T+ +EK I++ VQ Sbjct: 536 TIFETIADYGQMTKDMDLLTEYVRQSLSRQISKQFAQQGEPLYVVTLSGMVEKMIADGVQ 595 Query: 62 QTEQGSYLALDPVSTQTVYQRLTEQINRLLQSGQQPIVLTSPTIRMYLRQVIERTMQDIP 121 QTE G+++++DP +Q + + ++ +RL Q GQ P++L SP +RMY+RQ++ER + +P Sbjct: 596 QTEHGNFVSIDPDQSQKIIEAAAQEADRLSQMGQPPVILCSPAVRMYVRQLLERYLPQVP 655 Query: 122 VLSYSELEPNIEIQSVGVVN 141 +LSY+ELE N+E+QSVGVVN Sbjct: 656 ILSYNELEANVEVQSVGVVN 675 >ref|NP_389521.1| flagella-associated protein [Bacillus subtilis] sp|P35620|FLHA_BACSU Flagellar biosynthesis protein flhA pir||S33664 flagella-associated protein flhA - Bacillus subtilis emb|CAA45225.1| FLHA [Bacillus subtilis] emb|CAB13512.1| flagella-associated protein [Bacillus subtilis subsp. subtilis str. 168] Length = 677 Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 70/142 (49%), Positives = 107/142 (75%) Query: 1 VTIFETLADYGTYTKDPDVLTEYVRQSLSRQITQQFSQTGETLRVITVGPNLEKKISESV 60 VTIFETLADYG T D D+LTEY RQ+L++QIT QF++ E L+V+T +EK I++ V Sbjct: 536 VTIFETLADYGKLTTDSDLLTEYTRQALAKQITAQFAKENEVLKVVTCSGRVEKAIADGV 595 Query: 61 QQTEQGSYLALDPVSTQTVYQRLTEQINRLLQSGQQPIVLTSPTIRMYLRQVIERTMQDI 120 QQTE G+YL+L+P ++++ + + ++ +L + I+L SP +RMY++Q++ER D+ Sbjct: 596 QQTEHGNYLSLEPDISESIVRSVAKEAEQLSLRQETAILLCSPPVRMYVKQLLERYFPDL 655 Query: 121 PVLSYSELEPNIEIQSVGVVNL 142 PVLSY+ELE N+E+QS+GVV++ Sbjct: 656 PVLSYNELEANVEVQSIGVVDI 677 >ref|ZP_00183580.1| hypothetical protein Exigu101201 [Exiguobacterium sp. 255-15] Length = 659 Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 75/138 (54%), Positives = 97/138 (70%), Gaps = 1/138 (0%) Query: 3 IFETLADYGTYTKDPDVLTEYVRQSLSRQITQQFSQTGETLRVITVGPNLEKKISESVQQ 62 IFETLADY T TKD D+L EYVRQ+L+RQIT+Q Q G+ L V+TV LE I ++Q+ Sbjct: 523 IFETLADYATVTKDSDLLAEYVRQALARQITEQVLQ-GDVLHVVTVSSELEMDIQSAIQK 581 Query: 63 TEQGSYLALDPVSTQTVYQRLTEQINRLLQSGQQPIVLTSPTIRMYLRQVIERTMQDIPV 122 TE G+YLALDP + L E + G QPIVL SP+IRM++RQ+ ER D+PV Sbjct: 582 TEFGNYLALDPDKATRFIESLNELTAEFERYGAQPIVLASPSIRMFVRQLTERYFPDVPV 641 Query: 123 LSYSELEPNIEIQSVGVV 140 LSY+EL P IE++S+GV+ Sbjct: 642 LSYNELIPTIEVKSIGVI 659 >ref|ZP_00059978.1| COG1298: Flagellar biosynthesis pathway, component FlhA [Clostridium thermocellum ATCC 27405] Length = 679 Score = 144 bits (362), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 71/142 (50%), Positives = 105/142 (73%), Gaps = 1/142 (0%) Query: 1 VTIFETLADYGTYTKDPDVLTEYVRQSLSRQITQQFSQTGETLRVITVGPNLEKKISESV 60 VTI ETLADY T D D+LTEYVRQ+L R I+++F + ++ VIT+ P LE+ I +SV Sbjct: 539 VTILETLADYAPITHDTDMLTEYVRQALGRAISKKFIRDKKS-TVITLDPKLEQMIMDSV 597 Query: 61 QQTEQGSYLALDPVSTQTVYQRLTEQINRLLQSGQQPIVLTSPTIRMYLRQVIERTMQDI 120 Q+TE GSY+ L+P + L++Q+ +L+Q GQQPIVL SP +R+Y R++ E+++ + Sbjct: 598 QKTEHGSYINLEPSVINKILNNLSKQVQKLVQLGQQPIVLASPFVRLYFRRLSEQSIPGL 657 Query: 121 PVLSYSELEPNIEIQSVGVVNL 142 VLSY+EL+P+IEIQS+G V++ Sbjct: 658 VVLSYNELDPSIEIQSIGTVSI 679 >ref|NP_692496.1| flagella-associated protein [Oceanobacillus iheyensis HTE831] dbj|BAC13531.1| flagella-associated protein [Oceanobacillus iheyensis HTE831] Length = 677 Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 66/140 (47%), Positives = 101/140 (72%) Query: 3 IFETLADYGTYTKDPDVLTEYVRQSLSRQITQQFSQTGETLRVITVGPNLEKKISESVQQ 62 IFETLAD+ T D ++L EYVRQSLS QIT+ ++Q ++VITV +EK I++++QQ Sbjct: 537 IFETLADFSKMTNDTELLGEYVRQSLSAQITKNYAQENNQMKVITVSGKVEKTIADNIQQ 596 Query: 63 TEQGSYLALDPVSTQTVYQRLTEQINRLLQSGQQPIVLTSPTIRMYLRQVIERTMQDIPV 122 TE G++L+LDP + Q + + + + +L + I++ SP IRMYL+Q+++R + + V Sbjct: 597 TEHGNFLSLDPETQQQIIKTIHAEAEKLSLQEETTILICSPAIRMYLKQLLDRFLPQVVV 656 Query: 123 LSYSELEPNIEIQSVGVVNL 142 LSY+ELEP +E+QSVGVVN+ Sbjct: 657 LSYNELEPTVEVQSVGVVNI 676 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.314 0.130 0.344 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 175,833,613 Number of extensions: 5763249 Number of successful extensions: 16051 Number of sequences better than 1.0e-05: 241 Number of HSP's gapped: 15948 Number of HSP's successfully gapped: 241 Length of query: 142 Length of database: 757,237,578 Length adjustment: 103 Effective length of query: 39 Effective length of database: 477,582,381 Effective search space: 18625712859 Effective search space used: 18625712859 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 120 (50.8 bits)