BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0039.p (282 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00059980.1| COG0455: ATPases involved in chromosome parti... 232 8e-60 ref|NP_782258.1| flagellar synthesis regulator fleN [Clostridium... 222 7e-57 ref|NP_243302.1| BH2436~unknown conserved protein [Bacillus halo... 220 2e-56 ref|NP_348763.1| ATPases involved in chromosome partitioning, Mi... 209 4e-53 ref|NP_212403.1| ATP-binding protein (ylxH-1) [Borrelia burgdorf... 202 7e-51 >ref|ZP_00059980.1| COG0455: ATPases involved in chromosome partitioning [Clostridium thermocellum ATCC 27405] Length = 302 Score = 232 bits (591), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 113/267 (42%), Positives = 168/267 (62%), Gaps = 1/267 (0%) Query: 13 EASARIITVCSGKGGVGKSNFTLNFALTLQAMGKRVLLFDADIGMANIDVLMGVSAKYNL 72 E +A++ITV SGKGGVGK+N T+N A+ L +GKRV + DAD G+ANID+L+G+ KY L Sbjct: 31 EKTAKVITVTSGKGGVGKTNITINLAIALSELGKRVTILDADFGLANIDILLGIVPKYTL 90 Query: 73 YHLLKREADIGEIIHKGPKGLPFIAGGSGMDELFSLSEADLSYFTDQITGIADTMDFILF 132 +L + +I E++ GPK + F++GGSG++EL L L F I+ + D IL Sbjct: 91 VDVLYDKKNILEVLTDGPKNIKFMSGGSGVEELVKLDSTQLEKFVSNISLLDKLSDVILI 150 Query: 133 DTGAGLSKETMKFITSADDCLVVTTPEPTAITDAYALIKVVNNSHPKVSFRLIVNQAGDE 192 DTGAGLS+ M F+ +AD+ +VTTPEPT+ITDAYALIK+++N R++VN+A + Sbjct: 151 DTGAGLSESVMSFVMAADEVFLVTTPEPTSITDAYALIKMISNRENNKIIRVVVNRAENA 210 Query: 193 KEAHATSDKIRMAASRFLQLDISFLGYISSDTHVVQAVKRQIPFSVAFPNSSAAKDVHRX 252 EA +++ M +FL + + LG+I D V++AVK Q PFS++FP A K + Sbjct: 211 NEAKDILNRLSMVTEKFLAMKLYPLGFIPQDESVIKAVKMQQPFSLSFPKCDATKHIKEI 270 Query: 253 XXXXXXXXXXXTTKVQ-GIKGFISKWL 278 + + + GIKGF+ + + Sbjct: 271 SKRLIEGSTGLSNRQEGGIKGFVRRLV 297 >ref|NP_782258.1| flagellar synthesis regulator fleN [Clostridium tetani E88] gb|AAO36195.1| flagellar synthesis regulator fleN [Clostridium tetani E88] Length = 296 Score = 222 bits (566), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 108/238 (45%), Positives = 164/238 (68%), Gaps = 1/238 (0%) Query: 13 EASARIITVCSGKGGVGKSNFTLNFALTLQAMGKRVLLFDADIGMANIDVLMGVSAKYNL 72 E +I+TV SGKGGVGKSNF +N ++ LQ GK+VL+ D DIGMAN D+LMG KY++ Sbjct: 25 EKKPKILTVTSGKGGVGKSNFVVNLSIALQKRGKKVLVLDTDIGMANDDILMGFFPKYDI 84 Query: 73 YHLLKREADIGEIIHKGPKGLPFIAGGSGMDELFSLSEADLSYFTDQITGIADTMDFILF 132 H+L + E+I +GP G+ + GGSGM +L ++E F +I+ + D +DFI+ Sbjct: 85 GHVLFHNMPLEEVIIEGPFGVKLLPGGSGMTKLNEITEEIRENFIGKISALRD-LDFIII 143 Query: 133 DTGAGLSKETMKFITSADDCLVVTTPEPTAITDAYALIKVVNNSHPKVSFRLIVNQAGDE 192 DTGAG ++FI+ ++D +++TTPEPTA+TDAY+L+K+V+ K + +++VN+A + Sbjct: 144 DTGAGADDRVLRFISCSEDLILLTTPEPTALTDAYSLLKLVSYFKIKSNAKVVVNKALNY 203 Query: 193 KEAHATSDKIRMAASRFLQLDISFLGYISSDTHVVQAVKRQIPFSVAFPNSSAAKDVH 250 KEA T +K +++FL +D+ FLGYI D V++AV++Q PF ++FPNS AAK + Sbjct: 204 KEALNTFNKFNNTSNKFLSIDLEFLGYIMEDRKVIEAVRKQSPFILSFPNSYAAKSIE 261 >ref|NP_243302.1| BH2436~unknown conserved protein [Bacillus halodurans] pir||D83954 hypothetical protein BH2436 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06155.1| BH2436~unknown conserved protein [Bacillus halodurans] Length = 288 Score = 220 bits (561), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 107/238 (44%), Positives = 156/238 (65%), Gaps = 5/238 (2%) Query: 12 GEASARIITVCSGKGGVGKSNFTLNFALTLQAMGKRVLLFDADIGMANIDVLMGVSAKYN 71 G ++I V SGKGGVGKSN +LNFALTL ++V L D D+GM N+D+LMG+S Y+ Sbjct: 19 GRGQGKVIAVVSGKGGVGKSNVSLNFALTLSRQNQKVALIDLDLGMGNLDILMGLSPSYH 78 Query: 72 LYHLLKREADIGEIIHKGPKGLPFIAGGSGMDELFSLSEADLSYFTDQITGIADTMDFIL 131 + ++KRE I +I +GP+G+ +IAGGSG+ EL L+E + F Q+ + D+I+ Sbjct: 79 IIDMIKRELTIWDIAEQGPEGITYIAGGSGLSELVELNERQMERFFQQLESLGAIYDYII 138 Query: 132 FDTGAGLSKETMKFITSADDCLVVTTPEPTAITDAYALIKVVNN---SHPKVSFRLIVNQ 188 D GAG + E+++FI SA + VVTTPEPT+ITDAYA++K + +P++ LIVN+ Sbjct: 139 LDMGAGATAESLRFILSAHEIFVVTTPEPTSITDAYAMVKYICKEPIENPEI--LLIVNR 196 Query: 189 AGDEKEAHATSDKIRMAASRFLQLDISFLGYISSDTHVVQAVKRQIPFSVAFPNSSAA 246 A ++E T+ + S FL+ DI LGY+ D+HVV+AVK Q PF + P + A+ Sbjct: 197 AESKREGEQTAANFKRVVSHFLKKDIHSLGYLPQDSHVVKAVKAQAPFVLHAPQAKAS 254 >ref|NP_348763.1| ATPases involved in chromosome partitioning, MinD family, YLXH B.subtilis ortholog [Clostridium acetobutylicum] pir||D97164 ATPases involved in chromosome partitioning, MinD family, YLXH B. subtilis ortholog [imported] - Clostridium acetobutylicum gb|AAK80103.1| ATPases involved in chromosome partitioning, MinD family, YLXH B.subtilis ortholog [Clostridium acetobutylicum] Length = 287 Score = 209 bits (533), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 102/245 (41%), Positives = 160/245 (65%), Gaps = 3/245 (1%) Query: 8 RASGGEASAR--IITVCSGKGGVGKSNFTLNFALTLQAMGKRVLLFDADIGMANIDVLMG 65 + + GE R IITV SGKGGVGKSNF +N ++TLQ M K+VL+FDAD+GM N D+L+G Sbjct: 14 KKNAGEEIKRPVIITVTSGKGGVGKSNFVVNLSITLQQMNKKVLIFDADVGMGNDDILLG 73 Query: 66 VSAKYNLYHLLKREADIGEIIHKGPKGLPFIAGGSGMDELFSLSEADLSYFTDQITGIAD 125 +KY+++ ++ I + I +GP G+ + GGSG+ + ++E ++ F ++ I + Sbjct: 74 CISKYSVFDVIYNNMKIEDAIVEGPFGVKLLPGGSGITKFKDITEDQINAFVKKLASIGN 133 Query: 126 TMDFILFDTGAGLSKETMKFITSADDCLVVTTPEPTAITDAYALIKVVNNSHPKVSFRLI 185 D+I+ DTGAG+++ + FI+ ++ +++TTPEPT++TDAY+L K V + K +++ Sbjct: 134 -FDYIIMDTGAGVNRSVLGFISCCEELIILTTPEPTSLTDAYSLFKAVVHFKIKSYAKVV 192 Query: 186 VNQAGDEKEAHATSDKIRMAASRFLQLDISFLGYISSDTHVVQAVKRQIPFSVAFPNSSA 245 +N+ D KE T K + A +FL+ D FLG IS D+ +V+AV+ Q PF V PN A Sbjct: 193 INRVVDNKEGLETYKKFQSVAKKFLKADTEFLGSISEDSRIVKAVRNQTPFVVENPNCYA 252 Query: 246 AKDVH 250 AKD+ Sbjct: 253 AKDIQ 257 >ref|NP_212403.1| ATP-binding protein (ylxH-1) [Borrelia burgdorferi] pir||E70133 ATP-binding protein (ylxH-1) homolog - Lyme disease spirochete gb|AAC66679.1| ATP-binding protein (ylxH-1) [Borrelia burgdorferi B31] Length = 295 Score = 202 bits (514), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 99/234 (42%), Positives = 153/234 (65%), Gaps = 2/234 (0%) Query: 14 ASARIITVCSGKGGVGKSNFTLNFALTLQAMGKRVLLFDADIGMANIDVLMGVSAKYNLY 73 + R I V SGKGGVGKSN + AL +GK+VL+ DADIGMAN+++L+GV KY++Y Sbjct: 29 SKTRFIAVSSGKGGVGKSNIAIGLALKYSELGKKVLILDADIGMANVNILLGVIPKYSIY 88 Query: 74 HLLKREADIGEIIHKGPKGLPFIAGGSGMDELFSLSEADLSYFTDQITGIADTMDFILFD 133 H++ + DI E+I K + +AG SG EL LS+ D++ F ++ I + D ++ D Sbjct: 89 HMIAQSRDIREVITKTEYNIDLLAGASGTMELLDLSDVDVNKFIKELLKIYE-YDIVVID 147 Query: 134 TGAGLSKETMKFITSADDCLVVTTPEPTAITDAYALIKVVNNSHPKV-SFRLIVNQAGDE 192 T AG+S++ + F+ S+DD ++VTTPEPT+ITDAY +IKV++ + + RLIVN+ + Sbjct: 148 TSAGISRQVISFLLSSDDVVIVTTPEPTSITDAYGIIKVLSYKMENLKNLRLIVNRVANV 207 Query: 193 KEAHATSDKIRMAASRFLQLDISFLGYISSDTHVVQAVKRQIPFSVAFPNSSAA 246 EA + K+ + +FL L+I +LG+I D ++ +V +Q PF + PNS A+ Sbjct: 208 SEAKGVAKKVIDISGQFLNLNIDYLGHIYEDQNIRSSVFKQKPFVLVNPNSKAS 261 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.134 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 377,843,616 Number of extensions: 14435668 Number of successful extensions: 39100 Number of sequences better than 1.0e-05: 479 Number of HSP's gapped: 38974 Number of HSP's successfully gapped: 479 Length of query: 282 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 158 Effective length of database: 420,565,302 Effective search space: 66449317716 Effective search space used: 66449317716 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)