BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0037.p (687 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_243836.1| two-component sensor histidine kinase involved ... 677 0.0 ref|NP_693464.1| two-component sensor histidine kinase [Oceanoba... 642 0.0 ref|NP_389525.1| two-component sensor histidine kinase [Bacillus... 642 0.0 ref|ZP_00183583.1| hypothetical protein Exigu101501 [Exiguobacte... 608 e-172 ref|ZP_00059983.1| COG0643: Chemotaxis protein histidine kinase ... 547 e-154 >ref|NP_243836.1| two-component sensor histidine kinase involved in chemotaxis [Bacillus halodurans] pir||B84021 two-component sensor histidine kinase involved in chemotaxis cheA [imported] - Bacillus halodurans (strain C-125) dbj|BAB06689.1| two-component sensor histidine kinase involved in chemotaxis [Bacillus halodurans] Length = 682 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/693 (51%), Positives = 477/693 (68%), Gaps = 17/693 (2%) Query: 1 MDMNQYLSMFIDESNDHLQSLNESMMGLEANPEDLSIVQVIFRSAHTLKGMAATMGFEDL 60 M ++YL +FIDES +HLQ++N++++ LE +P DLSIV IFRSAHTLKGMAATMGFEDL Sbjct: 1 MSHSEYLEVFIDESQEHLQAINDNLLKLEVSPSDLSIVGEIFRSAHTLKGMAATMGFEDL 60 Query: 61 ASLTHQMENVLDLVRNNKLRMQDFIFDTLFKSLDALESMVEDITGGGEGKADVSAIVASL 120 A LTH MENVLDL+RN KL + D +F+++D LE+MV DI GG+GK DV+ +V L Sbjct: 61 AHLTHNMENVLDLIRNQKLDATSEVLDVVFEAVDDLEAMVGDIASGGDGKRDVTKVVVML 120 Query: 121 QAIVRGEIXXXXXXXXXXXXXXXXXXXV------FLDEFQYSVLEQSLQEGHKVLYVDVA 174 + I +GE DEF+ +VL+QS ++G++ ++V Sbjct: 121 EQIEKGETPDAGKAVHTPSPAAGQLELSGSSIIESYDEFEMTVLDQSFEQGYQAYQIEVT 180 Query: 175 IRKDCQLKAVRAYMVFDLLERSGEVVKSFPSVQDIEQEKFDHSFSLYYITQKEASEIQAM 234 + + LKA R +MVF++LE+ GEV+KS PS +++E+EKFD F + +T+ + E++ Sbjct: 181 LDEKTLLKAARVFMVFEVLEQVGEVIKSTPSAEELEEEKFDERFLVTLLTKVDGEEVRQR 240 Query: 235 ILNLSEIDKVTAVALDQESLRQMGQDMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG 294 IL +SEI V +LD+++L+ + + Sbjct: 241 ILKVSEITAVDICSLDKQALQALKE---------TQHTQSDKQVDVEKAEEQTEKKTATT 291 Query: 295 KPAPVRTGGAPSRTIRVDIERLDVLMNLFSELLIDRVRLEQLASEVQNTDLTETVEHMGR 354 P+ + G ++T+RV+IERLDVLMNLF EL+IDR RLEQ+ASE+ +L ETVE M R Sbjct: 292 TPSD-KKGVEVNKTVRVNIERLDVLMNLFEELVIDRGRLEQIASELNQNELNETVERMSR 350 Query: 355 VSGDLQNIVMKLRMVPVDTVFNRFPRMVRDLAKSLDKKIDLVVTGAETELDRTVIDEIGD 414 +SGDLQ I++ +RM+PV+ VFNRFPRMVR L+K L+KK++L + GAETELDRT+IDEIGD Sbjct: 351 ISGDLQEIILNMRMMPVEQVFNRFPRMVRSLSKELNKKVNLEIVGAETELDRTIIDEIGD 410 Query: 415 PLVHLLRNAVDHGVEGIQDRLAAGKSDTGTVNLRAFHSGNHVFIEIEDDGAGINPQKILQ 474 PLVHL+RN++DHG+E + R AAGK + GTV LRAFHSGN+VFIEIEDDGAGI+ K+LQ Sbjct: 411 PLVHLIRNSIDHGIETPEVRRAAGKPEEGTVILRAFHSGNNVFIEIEDDGAGIDRDKVLQ 470 Query: 475 SAIKKGILSQEQASSYSDDEAIQLLFAPGFSTAEVISDVSGRGVGLDVVKSKITSLGGNV 534 A+ G++++E A+ +D + QLLFAPGFSTAE I+D+SGRGVGLDVV+S S+GG V Sbjct: 471 KALTNGVVTEEDAAKMNDSQVFQLLFAPGFSTAEKITDISGRGVGLDVVQSTFESIGGVV 530 Query: 535 VVYSTQGKGTNFSVQLPLTLSIIAAMLVRLGTEKYAIPLSSIVETGIVKQTQIRSIHGNK 594 V S GKG+ FS+QLPLTLSII MLV + EKYAIPLSSIVET IV + ++ S H K Sbjct: 531 SVTSKLGKGSLFSIQLPLTLSIIDVMLVEVADEKYAIPLSSIVETAIVNKNEVYSAHNQK 590 Query: 595 MVEFRNSHIPLVSLSKIFSVPDYDXXXXXXXXIVVVRKGERLVALAVQDFIGQNEIVIKN 654 +++FR +PLV LS IF+VP+ +V+V KGE++ L V IGQ++IV+K+ Sbjct: 591 VIDFRGKVVPLVFLSDIFAVPE-KREADELYSLVIVHKGEKVAGLVVDSLIGQHDIVLKS 649 Query: 655 LGKYLPEVQGISGATILGDGQVALIIDPNAFIK 687 LG YL +V ISGATILG+GQVALI+D NA IK Sbjct: 650 LGDYLTDVFAISGATILGNGQVALIVDTNALIK 682 >ref|NP_693464.1| two-component sensor histidine kinase [Oceanobacillus iheyensis HTE831] dbj|BAC14499.1| two-component sensor histidine kinase [Oceanobacillus iheyensis HTE831] Length = 678 Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/689 (48%), Positives = 460/689 (66%), Gaps = 13/689 (1%) Query: 1 MDMNQYLSMFIDESNDHLQSLNESMMGLEANPEDLSIVQVIFRSAHTLKGMAATMGFEDL 60 M+ QYL MF+DES +HLQ +N++++ LE PED+ IV IFRSAHTLKGMAATMGFED+ Sbjct: 1 METEQYLDMFLDESKEHLQIVNDNILRLEKEPEDIHIVNEIFRSAHTLKGMAATMGFEDI 60 Query: 61 ASLTHQMENVLDLVRNNKLRMQDFIFDTLFKSLDALESMVEDITGGGEGKADVSAIVASL 120 ASLTH+MENVLDL+RN +L + I D++ ++ LE MV+ I+ G +GK DV ++ L Sbjct: 61 ASLTHKMENVLDLIRNQQLTVNSEIIDSIILGIEYLEEMVQSISEGNDGKKDVYTLLVRL 120 Query: 121 QAIVRGEIXXXXXXXXXXXXXXXXX--XXVFLDEFQYSVLEQSLQEGHKVLYVDVAIRKD 178 + I +GE+ + LDEFQ ++L+Q+ ++G + V + + Sbjct: 121 EQIEKGEVAAATETIVNQEQQVSTVDVENLDLDEFQLTILKQAKEQGFDPYQITVELTDE 180 Query: 179 CQLKAVRAYMVFDLLERSGEVVKSFPSVQDIEQEKFDHSFSLYYITQKEASEIQAMILNL 238 C LK RAYMVF+ LE GE++++ P+V++IE F SF L +T + I+ +I + Sbjct: 181 CILKGARAYMVFEALESHGEIIQTAPTVEEIEDGNFGQSFQLTLLTGGTPNTIKEIIEKV 240 Query: 239 SEIDKVTAVALDQESLRQMGQDMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPAP 298 SE+ +E+ Q+ + + Sbjct: 241 SEV---------KEANIQLFSKTLNPIVSEKEIIEDNQLEKREEVVSKKEDEPKDKNRSE 291 Query: 299 VRTGGAPSRTIRVDIERLDVLMNLFSELLIDRVRLEQLASEVQNTDLTETVEHMGRVSGD 358 RT + SRTIRV++E++D L+NLF E++IDR RLE ++ +++TDL ETVEHM RVS D Sbjct: 292 KRT--SSSRTIRVNLEKIDDLLNLFEEVVIDRSRLEVISETIEDTDLKETVEHMSRVSSD 349 Query: 359 LQNIVMKLRMVPVDTVFNRFPRMVRDLAKSLDKKIDLVVTGAETELDRTVIDEIGDPLVH 418 +Q++++ +RMVP++ VFNRFPRM+R L+K L+K+I L + GA+TELDRTVIDEIGDPLVH Sbjct: 350 MQSLILAMRMVPIEQVFNRFPRMIRGLSKDLNKQISLEIIGADTELDRTVIDEIGDPLVH 409 Query: 419 LLRNAVDHGVEGIQDRLAAGKSDTGTVNLRAFHSGNHVFIEIEDDGAGINPQKILQSAIK 478 L+RN+VDHG+E ++R GK + G + LRAFHSGNHVFIEIEDDGAGIN K+ AI Sbjct: 410 LIRNSVDHGIEIPEERRKNGKPEEGKLILRAFHSGNHVFIEIEDDGAGINRDKVQSKAID 469 Query: 479 KGILSQEQASSYSDDEAIQLLFAPGFSTAEVISDVSGRGVGLDVVKSKITSLGGNVVVYS 538 G++++++A +DD+ + + GFSTA+ +SD+SGRGVGLDVVKSKI SLGG V + + Sbjct: 470 NGLITEQEAELLTDDQIASFIMSSGFSTADAVSDISGRGVGLDVVKSKIESLGGQVSIET 529 Query: 539 TQGKGTNFSVQLPLTLSIIAAMLVRLGTEKYAIPLSSIVETGIVKQTQIRSIHGNKMVEF 598 + GKG+ FS+QLPLTLSIIA +LV + E YAIPLSSI+ET ++ + ++ HG ++++F Sbjct: 530 SAGKGSIFSIQLPLTLSIIATLLVSVQKETYAIPLSSIIETVVLPKNKVMLAHGKEVMDF 589 Query: 599 RNSHIPLVSLSKIFSVPDYDXXXXXXXXIVVVRKGERLVALAVQDFIGQNEIVIKNLGKY 658 R IP+VSL+ IF VP D IVVV+KGE+L L V FIGQ E+V+K+LG Y Sbjct: 590 RGKVIPIVSLASIFKVPSMDNQDHQDYSIVVVKKGEKLTGLIVDGFIGQKEVVLKSLGNY 649 Query: 659 LPEVQGISGATILGDGQVALIIDPNAFIK 687 L EV ISGATILGDG+VALIID NA +K Sbjct: 650 LGEVFAISGATILGDGEVALIIDSNALVK 678 >ref|NP_389525.1| two-component sensor histidine kinase [Bacillus subtilis] sp|P29072|CHEA_BACSU Chemotaxis protein cheA pir||QRBSCN two-component sensor histidine kinase chemotactic signal modululator cheA - Bacillus subtilis gb|AAA22313.1| histidine kinase chemotactic signal modulator [Bacillus subtilis] emb|CAB13516.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] Length = 671 Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/686 (47%), Positives = 461/686 (67%), Gaps = 16/686 (2%) Query: 1 MDMNQYLSMFIDESNDHLQSLNESMMGLEANPEDLSIVQVIFRSAHTLKGMAATMGFEDL 60 MDMNQYL +FIDES +HLQ+ NE ++ LE +P DL +V IFR+AHTLKGM+ATMG+ DL Sbjct: 1 MDMNQYLDVFIDESKEHLQTCNEKLLLLEKDPTDLQLVHDIFRAAHTLKGMSATMGYTDL 60 Query: 61 ASLTHQMENVLDLVRNNKLRMQDFIFDTLFKSLDALESMVEDITGGGEGKADVSAIVASL 120 A LTH +ENVLD +RN + + D LF++LD LE+MV+ I GG+GK D+S + A L Sbjct: 61 AHLTHLLENVLDAIRNGDMEVTSDWLDILFEALDHLETMVQSIIDGGDGKRDISEVSAKL 120 Query: 121 QAIVRGEIXXXXXXXXXXXXXXXXXXXVFLDEFQYSVLEQSLQEGHKVLYVDVAIRKDCQ 180 V G + DEF+ +V++++ ++G K + +++ ++C Sbjct: 121 D--VNGAHAESAASAEPAEAQSSASDWEY-DEFERTVIQEAEEQGFKRYEIKISLNENCM 177 Query: 181 LKAVRAYMVFDLLERSGEVVKSFPSVQDIEQEKFDHSFSLYYITQKEASEIQAMILNLSE 240 LKAVR YMVF+ L GEV K+ PS + +E E F F + ++T + A +I+ +I +SE Sbjct: 178 LKAVRVYMVFEKLNEVGEVAKTIPSAEVLETEDFGTDFQVCFLTHQSAEDIEQLINGVSE 237 Query: 241 IDKVTAVALDQESLRQMGQDMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPAPVR 300 I+ V + G + + A Sbjct: 238 IEHVEVI---------QGAPLTSAEKPEESKQEDSPAAAVPANEEKQKQPAKNDEQAKHS 288 Query: 301 TGGAPSRTIRVDIERLDVLMNLFSELLIDRVRLEQLASEVQNTDLTETVEHMGRVSGDLQ 360 GG S+TIRV+I+RLD LMNLF EL+IDR RLEQ+A E+++ +LTETVE M R+SGDLQ Sbjct: 289 AGG--SKTIRVNIDRLDSLMNLFEELVIDRGRLEQIAKELEHNELTETVERMTRISGDLQ 346 Query: 361 NIVMKLRMVPVDTVFNRFPRMVRDLAKSLDKKIDLVVTGAETELDRTVIDEIGDPLVHLL 420 +I++ +RMVPV+TVFNRFPRM+R L K L+KKI+L + GAETELDRTVIDEIGDPLVHL+ Sbjct: 347 SIILNMRMVPVETVFNRFPRMIRQLQKELNKKIELSIIGAETELDRTVIDEIGDPLVHLI 406 Query: 421 RNAVDHGVEGIQDRLAAGKSDTGTVNLRAFHSGNHVFIEIEDDGAGINPQKILQSAIKKG 480 RN++DHG+E + RL GK ++G V L+A+HSGNHVFIE+EDDGAG+N +KIL+ +++ Sbjct: 407 RNSIDHGIEAPETRLQKGKPESGKVVLKAYHSGNHVFIEVEDDGAGLNRKKILEKPLER- 465 Query: 481 ILSQEQASSYSDDEAIQLLFAPGFSTAEVISDVSGRGVGLDVVKSKITSLGGNVVVYSTQ 540 ++++++A + D++ +L+FAPGFSTA+ ISD+SGRGVGLDVVK+K+ SLGG+V V S + Sbjct: 466 VITEKEAETLEDNQIYELIFAPGFSTADQISDISGRGVGLDVVKNKLESLGGSVSVKSAE 525 Query: 541 GKGTNFSVQLPLTLSIIAAMLVRLGTEKYAIPLSSIVETGIVKQTQIRSIHGNKMVEFRN 600 G+G+ FS+QLPLTLSII+ +L++L E +AIP+SSI+ET ++ + I H ++++FR Sbjct: 526 GQGSLFSIQLPLTLSIISVLLIKLEEETFAIPISSIIETAVIDRKDILQTHDREVIDFRG 585 Query: 601 SHIPLVSLSKIFSVPDYDXXXXXXXXIVVVRKGERLVALAVQDFIGQNEIVIKNLGKYLP 660 +P+V L + F + D I+VV+KG++ A V FIGQ E+V+K+LG YL Sbjct: 586 HIVPVVYLKEEFKIEDT-RKDAEQLHIIVVKKGDKPTAFVVDSFIGQQEVVLKSLGDYLT 644 Query: 661 EVQGISGATILGDGQVALIIDPNAFI 686 V ISGATILGDG+VALIID NA I Sbjct: 645 NVFAISGATILGDGEVALIIDCNALI 670 >ref|ZP_00183583.1| hypothetical protein Exigu101501 [Exiguobacterium sp. 255-15] Length = 663 Score = 608 bits (1568), Expect = e-172, Method: Compositional matrix adjust. Identities = 322/687 (46%), Positives = 448/687 (65%), Gaps = 25/687 (3%) Query: 1 MDMNQYLSMFIDESNDHLQSLNESMMGLEANPEDLSIVQVIFRSAHTLKGMAATMGFEDL 60 MD+N+YL +F+DES +HLQ++N S++ E +D +++ IFRSAHTLKGM+ TMG++ + Sbjct: 1 MDLNEYLGLFLDESIEHLQAINSSLLIFEQRLDDEAVIDQIFRSAHTLKGMSGTMGYDAI 60 Query: 61 ASLTHQMENVLDLVRNNKLRMQDFIFDTLFKSLDALESMVEDITGGGEGKADVSAIVASL 120 A LTH+ME+ LDLVR+ + D LF + + LE+MVEDI+ GG GK DV+ V L Sbjct: 61 ADLTHEMESALDLVRSKTQPATPELIDVLFVAAEQLETMVEDISQGGTGKLDVTTTVIRL 120 Query: 121 QAIVRGEIXXXXXXXXXXXXXXXXXXXVFLDEFQYSVLEQSLQEGHKVLYVDVAIRKDCQ 180 + + + D + SV+ QS+ G++ + V + D Sbjct: 121 KQFIDPDTESGKDTVKAAGTVMMNFE---CDVYSESVVRQSMASGYQAYVITVELSADVI 177 Query: 181 LKAVRAYMVFDLLERSGEVVKSFPSVQDIEQEKFDHSFSLYYITQKEASEIQAMILNLSE 240 LKA R YMVFD L+ G+V+ S P+ ++EQE+F+ F + ++T K A +IQ E Sbjct: 178 LKAARVYMVFDRLQNLGDVILSNPTSDELEQEQFETRFDVLFVTMKTAEDIQ------QE 231 Query: 241 IDKVTAVALDQESLRQMGQDMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPAPVR 300 I V+ VA + + Q P Sbjct: 232 IKAVSEVA------QVLIQPFEVSVEPAAAATLLEPVEETPAVNTSIETSTETQTPIA-- 283 Query: 301 TGGAPSRTIRVDIERLDVLMNLFSELLIDRVRLEQLASEVQNTDLTETVEHMGRVSGDLQ 360 ++TIRV++ER+D LMNLF E +IDR RLE++A+EV ++DLTETVE + R + +LQ Sbjct: 284 -----AKTIRVNLERIDRLMNLFEEFIIDRGRLERIAAEVGSSDLTETVERIKRGTNELQ 338 Query: 361 NIVMKLRMVPVDTVFNRFPRMVRDLAKSLDKKIDLVVTGAETELDRTVIDEIGDPLVHLL 420 ++V+ LRM+P++ VFNRFPRMVR ++K + K I L +TGAETELDRTVIDEIGDPLVHL+ Sbjct: 339 SLVLTLRMMPIEQVFNRFPRMVRSVSKDVGKNIKLHITGAETELDRTVIDEIGDPLVHLI 398 Query: 421 RNAVDHGVEGIQDRLAAGKSDTGTVNLRAFHSGNHVFIEIEDDGAGINPQKILQSAIKKG 480 RNAVDHG+E DR++AGK G ++LRA+HSGN VFIEIEDDGAGIN +++ + A++KG Sbjct: 399 RNAVDHGIESKADRISAGKPVEGNLSLRAYHSGNRVFIEIEDDGAGINQERVTKIALEKG 458 Query: 481 ILSQEQASSYSDDEAIQLLFAPGFSTAEVISDVSGRGVGLDVVKSKITSLGGNVVVYSTQ 540 +L++E+A+ + +EA LLFAPGFSTAE ++D+SGRGVGLDVVKSKI SLGG V V + + Sbjct: 459 LLTEEEATLLTPEEAAMLLFAPGFSTAETVTDLSGRGVGLDVVKSKIESLGGEVFVETKR 518 Query: 541 GKGTNFSVQLPLTLSIIAAMLVRLGTEKYAIPLSSIVETGIVKQTQIRSIHGNKMVEFRN 600 G+GT F + LPLTLSII+AMLV+L E YAIPL++I+ET +KQ I H K+ +FR Sbjct: 519 GEGTIFRISLPLTLSIISAMLVKLDQETYAIPLTAIIETTSLKQDVILQAHREKVFDFRG 578 Query: 601 SHIPLVSLSKIFSVPDYDXXXXXXXXIVVVRKGERLVALAVQDFIGQNEIVIKNLGKYLP 660 +PL+SL++++ +P + +VVVR GE+L L V + IGQ EIV+K LG YL Sbjct: 579 QLVPLISLNQVYGLPHVE---ADAYSVVVVRSGEKLAGLMVSELIGQQEIVMKPLGSYLE 635 Query: 661 EVQGISGATILGDGQVALIIDPNAFIK 687 ++ ISGATILGDGQVALIID NA ++ Sbjct: 636 GIRAISGATILGDGQVALIIDSNALLR 662 >ref|ZP_00059983.1| COG0643: Chemotaxis protein histidine kinase and related kinases [Clostridium thermocellum ATCC 27405] Length = 692 Score = 547 bits (1410), Expect = e-154, Method: Compositional matrix adjust. Identities = 303/698 (43%), Positives = 432/698 (61%), Gaps = 25/698 (3%) Query: 1 MDMNQYLSMFIDESNDHLQSLNESMMGLEANPEDLSIVQVIFRSAHTLKGMAATMGFEDL 60 MDM+QYL +FIDE+ +HLQSLN+S++ LE NP+D S++ IFR AHTLKGM+ TMGF + Sbjct: 1 MDMSQYLEIFIDETKEHLQSLNQSLLELEQNPDDTSVLNEIFRVAHTLKGMSGTMGFTKM 60 Query: 61 ASLTHQMENVLDLVRNNKLRMQDFIFDTLFKSLDALESMVEDITG-GGEGKADVSAIVAS 119 A LTH MENVL +RNN+++ + D LFK LDALE+ ++I G EG + + I+ Sbjct: 61 AKLTHDMENVLQALRNNQIKATSKLVDLLFKCLDALENYTDNIVNTGNEGSNEYNDIIKE 120 Query: 120 LQAIVRGEIXXXXXXXXXXXXXXXX-------------XXXVFLDEFQYSVLEQSLQEGH 166 L IV+ + + L++++ +V ++ + Sbjct: 121 LNDIVQTKSSDGGQQKSSLSGKKVSDLDGTSKEENQHPTAAIKLNQYELNVAAKAREMNM 180 Query: 167 KVLYVDVAIRKDCQLKAVRAYMVFDLLERSGEVVKSFPSVQDIEQEKFDHSFSLYYITQK 226 V + V + K C LK+ RA+++F LER GE+++S P V+DIE EKFD F++ +T K Sbjct: 181 NVFKITVVLNKGCVLKSARAFIIFQTLERHGEIIRSEPKVEDIEDEKFDFEFTVVCVT-K 239 Query: 227 EASEIQAMILN-LSEIDKVTAVALDQESLRQMGQDMVXXXXXXXXXXXXXXXXXXXXXXX 285 E E+ +N ++E+D+V V +D L+ Sbjct: 240 ENEEVFIKDINGIAEVDEVIVVPIDIPELKTS----TVQNDDNYERENVQTGGEEVHVQE 295 Query: 286 XXXXXXXXGKPAPVRTGGAPSRTIRVDIERLDVLMNLFSELLIDRVRLEQLASEVQNTDL 345 + +TG +T+RVDI+RLDVLMN SEL+I + RL L+ Sbjct: 296 EKSESNTSSQVHKTKTG----KTVRVDIDRLDVLMNFVSELIIIKTRLAGLSGSDNAQTY 351 Query: 346 TETVEHMGRVSGDLQNIVMKLRMVPVDTVFNRFPRMVRDLAKSLDKKIDLVVTGAETELD 405 ET+E++ R++ L + VMK+RMVPV+ VFNRFPRM+RD+A+ L K+I L ++G ETELD Sbjct: 352 NETIEYLDRITTSLNDAVMKVRMVPVEMVFNRFPRMIRDIARELGKEIQLNMSGVETELD 411 Query: 406 RTVIDEIGDPLVHLLRNAVDHGVEGIQDRLAAGKSDTGTVNLRAFHSGNHVFIEIEDDGA 465 RTVIDEIGDPL+HLLRN+ DHG+E + RLA GK G +NLRA+ G++V IE+EDDG Sbjct: 412 RTVIDEIGDPLIHLLRNSADHGIEPKEKRLAMGKPAVGHINLRAYQDGDNVVIEVEDDGQ 471 Query: 466 GINPQKILQSAIKKGILSQEQASSYSDDEAIQLLFAPGFSTAEVISDVSGRGVGLDVVKS 525 GI+ +K+ + A++KG++ +E ++ S + I LF P FST++ I+++SGRGVGLDVVK+ Sbjct: 472 GIDVEKVKKKAVEKGLVKKEIVNTLSQKDIIDFLFKPSFSTSDNITNISGRGVGLDVVKT 531 Query: 526 KITSLGGNVVVYSTQGKGTNFSVQLPLTLSIIAAMLVRLGTEKYAIPLSSIVETGIVKQT 585 KI LGG V V + GKG+ F ++LPLTL+II A+LV +G EKYAIPLSS E V Sbjct: 532 KIEQLGGVVEVETEAGKGSKFIIRLPLTLAIIQALLVMVGNEKYAIPLSSTKEIIKVTPE 591 Query: 586 QIRSIHGNKMVEFRNSHIPLVSLSKIFSVPDYDXXXXXXXXIVVVRKGERLVALAVQDFI 645 QI+++ +++ RN +P+V L KI VP + +V+V+KGE+L V I Sbjct: 592 QIKTVQKQEVILLRNMVVPIVRLDKILEVPPVE-RKKKDMTVVIVKKGEKLSGFLVDSLI 650 Query: 646 GQNEIVIKNLGKYLPEVQGISGATILGDGQVALIIDPN 683 GQ EIVIK+LGK L ++GI+GATILGDG VALI+D N Sbjct: 651 GQQEIVIKSLGKLLSNIKGIAGATILGDGNVALILDVN 688 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.136 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 824,769,527 Number of extensions: 30890297 Number of successful extensions: 100170 Number of sequences better than 1.0e-05: 374 Number of HSP's gapped: 99697 Number of HSP's successfully gapped: 541 Length of query: 687 Length of database: 757,237,578 Length adjustment: 133 Effective length of query: 554 Effective length of database: 396,129,411 Effective search space: 219455693694 Effective search space used: 219455693694 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)