BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0035.p (208 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_243300.1| inhibition of CheR-mediated methylation of MCPs... 224 1e-57 ref|ZP_00059985.1| COG1776: Chemotaxis protein CheC, inhibitor o... 192 6e-48 ref|NP_692501.1| CheC [Oceanobacillus iheyensis HTE831] >gi|2277... 186 4e-46 ref|NP_954241.1| chemotaxis protein, CheC family [Geobacter sulf... 182 4e-45 ref|NP_623033.1| Chemotaxis protein CheC, inhibitor of MCP methy... 180 2e-44 >ref|NP_243300.1| inhibition of CheR-mediated methylation of MCPs [Bacillus halodurans] pir||B83954 inhibition of CheR-mediated methylation of MCPs cheC [imported] - Bacillus halodurans (strain C-125) dbj|BAB06153.1| inhibition of CheR-mediated methylation of MCPs [Bacillus halodurans] Length = 209 Score = 224 bits (570), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 111/205 (54%), Positives = 154/205 (75%), Gaps = 2/205 (0%) Query: 1 VELFKNFKDFKMDVLKEVGNIGAGNAATALSQLLGKPIDMAVPKVQLLNFEEITDKVGGA 60 +E + F +D+LKE+GNIGAGNAATALSQLL K IDM VP V +++F+E+T+ +GG Sbjct: 1 MENLSELQAFHLDILKEIGNIGAGNAATALSQLLQKTIDMNVPNVHIVSFQELTEWIGGP 60 Query: 61 EELVYAVFLRVEGEAPGNLFFILTPEAAINLLSRIAGIELTG-NGELGEMELSALNEIGN 119 EE+V A FLR+EG+APG++FF+ T E A +++++ G + GE+ ++ +SAL E+GN Sbjct: 61 EEVVAATFLRIEGDAPGSMFFLATLEEAKGMVAQLTGASRSSLEGEMDDLSMSALKELGN 120 Query: 120 ILAGSYLSSLADFTSLSMYPTVPALAMDMAGAILSYGLLQFGQMGDDALLIDTTFL-EGH 178 ILAGSYLS+LADFT L +YP+VP L++DM GAIL+YGL+ Q+GD+A++IDT EG Sbjct: 121 ILAGSYLSALADFTKLKLYPSVPGLSIDMIGAILNYGLIPLSQIGDEAIVIDTQISEEGE 180 Query: 179 NEIEGQFFLIPDPESFPKIFKALGV 203 G FFL+PDPESF +F +LGV Sbjct: 181 RRGAGHFFLLPDPESFDVMFSSLGV 205 >ref|ZP_00059985.1| COG1776: Chemotaxis protein CheC, inhibitor of MCP methylation [Clostridium thermocellum ATCC 27405] Length = 216 Score = 192 bits (487), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 97/200 (48%), Positives = 145/200 (72%) Query: 4 FKNFKDFKMDVLKEVGNIGAGNAATALSQLLGKPIDMAVPKVQLLNFEEITDKVGGAEEL 63 F N + ++DVL+E+GNIG+GNAATAL+++L K ++M VP+V++L F+E++D +GGAE Sbjct: 15 FDNLDNIQIDVLREIGNIGSGNAATALAKMLNKRVNMDVPQVKVLQFQEVSDILGGAEIP 74 Query: 64 VYAVFLRVEGEAPGNLFFILTPEAAINLLSRIAGIELTGNGELGEMELSALNEIGNILAG 123 V + LRV G+ G++ FIL +AA L++ + G L E+ +SAL E+GNILAG Sbjct: 75 VVGLLLRVTGDISGSIMFILEKKAAGVLVNILMGKPLDEIVVFDEIAISALKEVGNILAG 134 Query: 124 SYLSSLADFTSLSMYPTVPALAMDMAGAILSYGLLQFGQMGDDALLIDTTFLEGHNEIEG 183 SYLS+L+ T+L++ P+VP LA+DMAGAI+S ++FG++GD L I+T F EG ++ G Sbjct: 135 SYLSALSTLTNLNILPSVPELAIDMAGAIISVPAIEFGKLGDSVLFIETEFSEGSTKVVG 194 Query: 184 QFFLIPDPESFPKIFKALGV 203 FFL+PD +S+ + KALGV Sbjct: 195 NFFLVPDIDSYEVLLKALGV 214 >ref|NP_692501.1| CheC [Oceanobacillus iheyensis HTE831] dbj|BAC13536.1| inhibition of CheR-mediated methylation of MCPs [Oceanobacillus iheyensis HTE831] Length = 212 Score = 186 bits (471), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 93/209 (44%), Positives = 139/209 (66%), Gaps = 6/209 (2%) Query: 5 KNFKDFKMDVLKEVGNIGAGNAATALSQLLGKPIDMAVPKVQLLNFEEITDKVGGAEELV 64 K + + D+L+E+GNIGAGNAATALSQLL + +DM VPKV ++ F+E+ D +GG E+ + Sbjct: 4 KKLNEDQRDLLREIGNIGAGNAATALSQLLNQKVDMKVPKVNVVGFDEVMDLIGGPEKTI 63 Query: 65 YAVFLRVEGEAPGNLFFILTPEAAINLLSRIAG---IELTGNGELGEMELSALNEIGNIL 121 + R+ G+ PG ++ IL E A L+ ++ L N E E+ +SAL+EIGNIL Sbjct: 64 VGLMFRINGDIPGTVYVILQIEEAEYLVRKLTNNPDYSLFDNNENQEIAISALSEIGNIL 123 Query: 122 AGSYLSSLADFTSLSMYPTVPALAMDMAGAILSYGLLQFGQMGDDALLIDTTFLEGHNEI 181 G+YLS+L+DFT++++ P+VP L +DMAGAIL+ GL++ D ++IDT + + Sbjct: 124 TGNYLSALSDFTTMNIQPSVPYLGIDMAGAILTVGLIEISHTNDYVIIIDTEMHQDDKKF 183 Query: 182 E---GQFFLIPDPESFPKIFKALGVPFDN 207 E G F IPDPESF K+F LG+ +++ Sbjct: 184 EKISGNFLFIPDPESFRKLFTKLGIDYND 212 >ref|NP_954241.1| chemotaxis protein, CheC family [Geobacter sulfurreducens PCA] gb|AAR36591.1| chemotaxis protein, CheC family [Geobacter sulfurreducens PCA] Length = 204 Score = 182 bits (462), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 92/202 (45%), Positives = 134/202 (66%) Query: 4 FKNFKDFKMDVLKEVGNIGAGNAATALSQLLGKPIDMAVPKVQLLNFEEITDKVGGAEEL 63 F + +D LKEV NIG +AATALSQL+GK I + VPKV L+ E+ + GGAE + Sbjct: 3 FDALTEEHLDALKEVSNIGVAHAATALSQLIGKGITLQVPKVHLMKITEVPEAFGGAERI 62 Query: 64 VYAVFLRVEGEAPGNLFFILTPEAAINLLSRIAGIELTGNGELGEMELSALNEIGNILAG 123 V ++L++ G+A GN+ +L E+A+ LLSR+ E + L E+E+SAL E+GNILA Sbjct: 63 VVGIYLQMLGDARGNILIVLPRESALKLLSRLLPREKSEGSLLTELEISALKEVGNILAS 122 Query: 124 SYLSSLADFTSLSMYPTVPALAMDMAGAILSYGLLQFGQMGDDALLIDTTFLEGHNEIEG 183 +YL++L ++ P+VP L+ DMAGA++ Y L++ G++GD AL+++T F +I G Sbjct: 123 AYLNALGALMRKTLIPSVPVLSFDMAGAVIDYVLIELGEVGDLALMVETEFFGEEEKIGG 182 Query: 184 QFFLIPDPESFPKIFKALGVPF 205 QFFL+PDPES I A+GV Sbjct: 183 QFFLLPDPESLRIILDAIGVKL 204 >ref|NP_623033.1| Chemotaxis protein CheC, inhibitor of MCP methylation [Thermoanaerobacter tengcongensis] gb|AAM24637.1| Chemotaxis protein CheC, inhibitor of MCP methylation [Thermoanaerobacter tengcongensis] Length = 211 Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 95/200 (47%), Positives = 133/200 (66%), Gaps = 2/200 (1%) Query: 4 FKNFKDFKMDVLKEVGNIGAGNAATALSQLLGKPIDMAVPKVQLLNFEEITDKVGGAEEL 63 + +DVLKE+GNIGAGNA TALS ++GK +DM VP V++L E+ D G + + Sbjct: 6 INRLNEIYLDVLKELGNIGAGNAITALSTMIGKKVDMKVPTVKILELVEVPDIFGSPDTV 65 Query: 64 VYAVFLRVEGEAPGNLFFILTPEAAINLLSRIAGIELTGNGELGEMELSALNEIGNILAG 123 + ++ ++G+ GN+ F L ++A +L+ + GIE E E+E SAL EIGNI+AG Sbjct: 66 IVGIYFGLDGDVKGNILFTLDLDSASSLIWNLMGIE--AKEEFDELEKSALEEIGNIMAG 123 Query: 124 SYLSSLADFTSLSMYPTVPALAMDMAGAILSYGLLQFGQMGDDALLIDTTFLEGHNEIEG 183 SY++SL+ TSL+M + PAL++DMAGAILS +Q+G++ D L I+T F+EG I G Sbjct: 124 SYVASLSTLTSLNMKISPPALSIDMAGAILSVPAIQYGEISDKILFIETQFVEGERLIRG 183 Query: 184 QFFLIPDPESFPKIFKALGV 203 FFLIPD SF I KALGV Sbjct: 184 DFFLIPDINSFDLILKALGV 203 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.140 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 308,549,117 Number of extensions: 12077611 Number of successful extensions: 29517 Number of sequences better than 1.0e-05: 46 Number of HSP's gapped: 29467 Number of HSP's successfully gapped: 47 Length of query: 208 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 88 Effective length of database: 431,425,698 Effective search space: 37965461424 Effective search space used: 37965461424 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)