BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0030.p
         (103 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_243295.1| BH2429~unknown [Bacillus halodurans] >gi|254904...    51   8e-06

>ref|NP_243295.1| BH2429~unknown [Bacillus halodurans]
 pir||E83953 hypothetical protein BH2429 [imported] - Bacillus halodurans
           (strain C-125)
 dbj|BAB06148.1| BH2429~unknown [Bacillus halodurans]
          Length = 103

 Score = 50.8 bits (120), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 50/102 (49%)

Query: 1   MSLKPVELQIAVPRTTEAGKIQNGLQHRPALDQQQLAGQNVKQTEQLAQRSSEVDESAEP 60
           MS++P+E Q A+PR+ + GKIQ+ LQ R  + Q+ +  Q   +T    ++ +E +E+   
Sbjct: 1   MSIRPIEYQGAIPRSQQVGKIQDQLQQRGQVGQEVIQEQLKDETNTKRKQVNEAEETDVA 60

Query: 61  ALRDXXXXXXXXXXXXXXPKPQKTETAHDAEHPYKGHRIDLS 102
             RD               + +K +      HPYKG  ID S
Sbjct: 61  RFRDGDKEKGQQKHEKEKEERKKQQKKVQKSHPYKGQFIDFS 102


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.308    0.125    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 113,586,247
Number of extensions: 2861980
Number of successful extensions: 5557
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5556
Number of HSP's successfully gapped: 1
Length of query: 103
Length of database: 757,237,578
Length adjustment: 70
Effective length of query: 33
Effective length of database: 567,180,648
Effective search space: 18716961384
Effective search space used: 18716961384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 120 (50.8 bits)