BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0026.p (216 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAN87363.1| protein translation elongation Factor Ts [Helioba... 272 4e-72 ref|NP_952969.1| translation elongation factor Ts [Geobacter sul... 257 1e-67 ref|NP_623026.1| Translation elongation factor Ts [Thermoanaerob... 253 2e-66 ref|ZP_00082206.1| COG0264: Translation elongation factor Ts [Ge... 251 7e-66 gb|EAH86993.1| unknown [environmental sequence] 241 1e-62 >gb|AAN87363.1| protein translation elongation Factor Ts [Heliobacillus mobilis] Length = 225 Score = 272 bits (695), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 141/214 (65%), Positives = 167/214 (78%) Query: 3 VDAKAVKELRERTGAGMLDCKKALEEANGDITKAAELLREKGLSAAANKAGRIATEGVVE 62 V A VKELRERTGAGM++CKKAL E NGD+ KA + LREKGL+AAA KA RIA EG+VE Sbjct: 12 VTAAMVKELRERTGAGMMECKKALGETNGDMEKAVDYLREKGLAAAAKKASRIAAEGLVE 71 Query: 63 SYIHAGGRIGVLVEINCETDFVGKTDSFKEFARDIAMQIAAANPLYVXXXXXXXXXXXXX 122 SYIH GGRIGVLVE+NCETDFV KTD++K RDIAMQIAA+ P YV Sbjct: 72 SYIHGGGRIGVLVEVNCETDFVAKTDAYKTLCRDIAMQIAASKPEYVRREEVPAEVIEKE 131 Query: 123 XXILKAQALNEGKPEKIVEKMVEGRISKFYEEHCLLEQTFVKDQDKTISQLLNEKISTIG 182 IL+ QALNEGKPEKIV+KMVEGR+ K+Y+E CLLEQ F+K+ D T+ QLL E ++ IG Sbjct: 132 KEILRNQALNEGKPEKIVDKMVEGRVEKYYKETCLLEQPFIKNPDVTVQQLLTEAVAKIG 191 Query: 183 ENISIRRFVRYELGEGLEKKVDNFVEEVMAQVNQ 216 ENIS+RRFVR+ELGEGL KK D+F EVMA++N+ Sbjct: 192 ENISVRRFVRFELGEGLAKKQDDFAAEVMAEINK 225 >ref|NP_952969.1| translation elongation factor Ts [Geobacter sulfurreducens PCA] gb|AAR35296.1| translation elongation factor Ts [Geobacter sulfurreducens PCA] Length = 216 Score = 257 bits (656), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 123/206 (59%), Positives = 155/206 (75%) Query: 1 MAVDAKAVKELRERTGAGMLDCKKALEEANGDITKAAELLREKGLSAAANKAGRIATEGV 60 M++ A V ELR+ TGAG++DCKKAL E NGD+ +A + LR+KGL+AA+ KAGR ATEG Sbjct: 1 MSITAAQVNELRKITGAGLMDCKKALTETNGDLEQAVDYLRKKGLAAASKKAGRAATEGA 60 Query: 61 VESYIHAGGRIGVLVEINCETDFVGKTDSFKEFARDIAMQIAAANPLYVXXXXXXXXXXX 120 V SYIHAGG+IGVLVE+NCETDFV + D+F+ F +DIAM IAAA+P YV Sbjct: 61 VGSYIHAGGKIGVLVEVNCETDFVARNDNFQAFVKDIAMHIAAASPQYVRREEVPAELLE 120 Query: 121 XXXXILKAQALNEGKPEKIVEKMVEGRISKFYEEHCLLEQTFVKDQDKTISQLLNEKIST 180 I +A+A GKPE I+EK++EG+I+KFY E CL+EQ FVKD DKT+ Q LNE IS+ Sbjct: 121 REKEIYRAKARETGKPENIIEKIIEGQINKFYAEICLMEQNFVKDPDKTVQQFLNETISS 180 Query: 181 IGENISIRRFVRYELGEGLEKKVDNF 206 IGEN+S+RRF R+ LGEGLEKK +F Sbjct: 181 IGENMSVRRFARFVLGEGLEKKESDF 206 >ref|NP_623026.1| Translation elongation factor Ts [Thermoanaerobacter tengcongensis] sp|Q8RA22|EFTS_THETN Elongation factor Ts (EF-Ts) gb|AAM24630.1| Translation elongation factor Ts [Thermoanaerobacter tengcongensis] Length = 200 Score = 253 bits (646), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 124/199 (62%), Positives = 156/199 (78%) Query: 3 VDAKAVKELRERTGAGMLDCKKALEEANGDITKAAELLREKGLSAAANKAGRIATEGVVE 62 + A+AVKELRERTGAGM+DCK AL EANGDI KA ++LREKGL+AAA KAGR A EG+VE Sbjct: 2 ISAQAVKELRERTGAGMMDCKNALIEANGDIEKAIDILREKGLAAAAKKAGRTANEGLVE 61 Query: 63 SYIHAGGRIGVLVEINCETDFVGKTDSFKEFARDIAMQIAAANPLYVXXXXXXXXXXXXX 122 +YIH GGRIGVLVE+NCETDFV T+ F+ F ++I MQIAAANP Y+ Sbjct: 62 AYIHGGGRIGVLVEVNCETDFVANTEEFRNFVKEICMQIAAANPKYISKEDVPQEVLEKE 121 Query: 123 XXILKAQALNEGKPEKIVEKMVEGRISKFYEEHCLLEQTFVKDQDKTISQLLNEKISTIG 182 IL+AQALNEGKP +++++VEGR+ KFY+E+CLLEQ +++D +KT+ LLNE I+ +G Sbjct: 122 KEILRAQALNEGKPANVIDRIVEGRLEKFYKENCLLEQEYIRDPEKTVKDLLNEMIAKLG 181 Query: 183 ENISIRRFVRYELGEGLEK 201 ENI IRRF R+E GEG+EK Sbjct: 182 ENIVIRRFARFERGEGIEK 200 >ref|ZP_00082206.1| COG0264: Translation elongation factor Ts [Geobacter metallireducens] Length = 216 Score = 251 bits (642), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 121/206 (58%), Positives = 153/206 (74%) Query: 1 MAVDAKAVKELRERTGAGMLDCKKALEEANGDITKAAELLREKGLSAAANKAGRIATEGV 60 M++ A V ELR+ TGAG++DCKKAL E GD KA + LR+KGL+AA+ KAGR+A+EG Sbjct: 1 MSITAAQVNELRKATGAGLMDCKKALTETGGDHEKAIDYLRKKGLAAASKKAGRVASEGA 60 Query: 61 VESYIHAGGRIGVLVEINCETDFVGKTDSFKEFARDIAMQIAAANPLYVXXXXXXXXXXX 120 V SYIHAGG+IGVLVE+NCETDFV + ++F+ F +DIAM IAAA P YV Sbjct: 61 VGSYIHAGGKIGVLVEVNCETDFVARNENFQAFVKDIAMHIAAAAPQYVRREEVTADVVE 120 Query: 121 XXXXILKAQALNEGKPEKIVEKMVEGRISKFYEEHCLLEQTFVKDQDKTISQLLNEKIST 180 I +A+A GKPE I+EK++EG+++KFY + CLLEQ +VKD DKT+ Q LNE I++ Sbjct: 121 REKEIYRAKARETGKPENIIEKIIEGQVNKFYADICLLEQQYVKDSDKTVQQFLNETIAS 180 Query: 181 IGENISIRRFVRYELGEGLEKKVDNF 206 IGENISIRRFVRY LGEGL KK +F Sbjct: 181 IGENISIRRFVRYALGEGLAKKETDF 206 >gb|EAH86993.1| unknown [environmental sequence] Length = 206 Score = 241 bits (614), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 113/197 (57%), Positives = 145/197 (73%) Query: 1 MAVDAKAVKELRERTGAGMLDCKKALEEANGDITKAAELLREKGLSAAANKAGRIATEGV 60 M++DAK VK LRE+TGAGM+DCK AL ++NGD+ KA + LR+ G++ A K R EG+ Sbjct: 1 MSIDAKLVKTLREKTGAGMMDCKNALVDSNGDLDKAVDYLRKSGVAKAEKKGTRDTREGL 60 Query: 61 VESYIHAGGRIGVLVEINCETDFVGKTDSFKEFARDIAMQIAAANPLYVXXXXXXXXXXX 120 V SYIHAGGR+GVL+E+NCETDFV KTD F E A ++AMQIAA NPL + Sbjct: 61 VYSYIHAGGRLGVLLELNCETDFVAKTDGFTELAHNLAMQIAATNPLSLDRESIDDEIIA 120 Query: 121 XXXXILKAQALNEGKPEKIVEKMVEGRISKFYEEHCLLEQTFVKDQDKTISQLLNEKIST 180 I QA +EGKP+ I+EKMVEGR+SKF++E CLLEQT++KD DK +S LL E I+T Sbjct: 121 REKEIFTDQAKSEGKPDNIIEKMVEGRLSKFFQESCLLEQTYIKDPDKKVSDLLTETIAT 180 Query: 181 IGENISIRRFVRYELGE 197 +GENISI RF+R+ +GE Sbjct: 181 LGENISINRFIRFAVGE 197 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.133 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 257,726,531 Number of extensions: 9156707 Number of successful extensions: 35055 Number of sequences better than 1.0e-05: 703 Number of HSP's gapped: 34123 Number of HSP's successfully gapped: 953 Length of query: 216 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 95 Effective length of database: 428,710,599 Effective search space: 40727506905 Effective search space used: 40727506905 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 123 (52.0 bits)