BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0586.0005.p
         (47 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_243274.1| 30S ribosomal protein S15; ribosomal protein S1...    80   2e-14
sp|P05766|RS15_BACST 30S ribosomal protein S15 (BS18)                  78   7e-14
pdb|1A32|  Ribosomal Protein S15 From Bacillus Stearothermophilus      78   8e-14
ref|NP_389550.1| ribosomal protein S15 (BS18) [Bacillus subtilis...    77   1e-13
ref|NP_657776.1| Ribosomal_S15, Ribosomal protein S15 [Bacillus ...    76   2e-13

>ref|NP_243274.1| 30S ribosomal protein S15; ribosomal protein S15 (BS18) [Bacillus
          halodurans]
 pir||H83950 ribosomal protein S15 (BS18) rpsO [imported] - Bacillus
          halodurans (strain C-125)
 dbj|BAB06127.1| 30S ribosomal protein S15 [Bacillus halodurans]
          Length = 89

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/47 (80%), Positives = 42/47 (89%)

Query: 1  LRTHKKDHHSRRGLLKMVGQRRKLLAYLKNKDIRRYSALIEKLGLRR 47
          LRTHKKDHHSRRGLLKMVGQRR LL YL+NKD+ RY  L++KLGLRR
Sbjct: 43 LRTHKKDHHSRRGLLKMVGQRRNLLTYLRNKDVTRYRNLVDKLGLRR 89


>sp|P05766|RS15_BACST 30S ribosomal protein S15 (BS18)
          Length = 89

 Score = 77.8 bits (190), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/47 (78%), Positives = 43/47 (91%)

Query: 1  LRTHKKDHHSRRGLLKMVGQRRKLLAYLKNKDIRRYSALIEKLGLRR 47
          LR HKKDHHSRRGLLKMVG+RR+LLAYL+NKD+ RY  ++EKLGLRR
Sbjct: 43 LRVHKKDHHSRRGLLKMVGKRRRLLAYLRNKDVARYREIVEKLGLRR 89


>pdb|1A32|  Ribosomal Protein S15 From Bacillus Stearothermophilus
          Length = 88

 Score = 77.8 bits (190), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 37/47 (78%), Positives = 43/47 (91%)

Query: 1  LRTHKKDHHSRRGLLKMVGQRRKLLAYLKNKDIRRYSALIEKLGLRR 47
          LR HKKDHHSRRGLLKMVG+RR+LLAYL+NKD+ RY  ++EKLGLRR
Sbjct: 42 LRVHKKDHHSRRGLLKMVGKRRRLLAYLRNKDVARYREIVEKLGLRR 88


>ref|NP_389550.1| ribosomal protein S15 (BS18) [Bacillus subtilis]
 sp|P21473|RS15_BACSU 30S ribosomal protein S15 (BS18)
 pir||F69700 ribosomal protein S15 (rpsO) - Bacillus subtilis
 emb|CAB02560.1| ribosomal protein S15 [Bacillus subtilis]
 emb|CAB13541.1| ribosomal protein S15 (BS18) [Bacillus subtilis subsp. subtilis
          str. 168]
          Length = 89

 Score = 77.4 bits (189), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/47 (80%), Positives = 41/47 (87%)

Query: 1  LRTHKKDHHSRRGLLKMVGQRRKLLAYLKNKDIRRYSALIEKLGLRR 47
          LRTHKKDHHSRRGLLKMVG+RR LL YL+NKD+ RY  LI KLGLRR
Sbjct: 43 LRTHKKDHHSRRGLLKMVGKRRNLLTYLRNKDVTRYRELINKLGLRR 89


>ref|NP_657776.1| Ribosomal_S15, Ribosomal protein S15 [Bacillus anthracis A2012]
 ref|NP_833528.1| SSU ribosomal protein S15P [Bacillus cereus ATCC 14579]
 ref|NP_846189.1| ribosomal protein S15 [Bacillus anthracis str. Ames]
 ref|NP_980143.1| ribosomal protein S15 [Bacillus cereus ATCC 10987]
 gb|AAP10729.1| SSU ribosomal protein S15P [Bacillus cereus ATCC 14579]
 gb|AAP27675.1| ribosomal protein S15 [Bacillus anthracis str. Ames]
 gb|AAS42751.1| ribosomal protein S15 [Bacillus cereus ATCC 10987]
          Length = 89

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/47 (80%), Positives = 40/47 (85%)

Query: 1  LRTHKKDHHSRRGLLKMVGQRRKLLAYLKNKDIRRYSALIEKLGLRR 47
          LRTHKKDHHSRRGLLKMVG+RR LL YL+N DI RY  LI KLGLRR
Sbjct: 43 LRTHKKDHHSRRGLLKMVGKRRNLLTYLRNSDITRYRELITKLGLRR 89


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.327    0.142    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 63,445,627
Number of extensions: 1601499
Number of successful extensions: 5312
Number of sequences better than 1.0e-05: 347
Number of HSP's gapped: 5312
Number of HSP's successfully gapped: 347
Length of query: 47
Length of database: 757,237,578
Length adjustment: 20
Effective length of query: 27
Effective length of database: 702,935,598
Effective search space: 18979261146
Effective search space used: 18979261146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 120 (50.8 bits)