BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0586.0004.p (700 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_980142.1| polyribonucleotide nucleotidyltransferase [Baci... 935 0.0 ref|NP_243273.1| polynucleotide phosphorylase [Bacillus halodura... 935 0.0 ref|NP_657775.1| RNase_PH, 3' exoribonuclease family [Bacillus a... 934 0.0 ref|NP_833527.1| Polyribonucleotide nucleotidyltransferase [Baci... 930 0.0 ref|NP_389551.1| polynucleotide phosphorylase (PNPase) [Bacillus... 926 0.0 >ref|NP_980142.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC 10987] gb|AAS42750.1| polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC 10987] Length = 712 Score = 935 bits (2417), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/692 (67%), Positives = 548/692 (79%), Gaps = 2/692 (0%) Query: 2 EKRV-EMQLGGRRLVLETGRLAKQANAAVMVRYGDTSVLCTVTASSEPKDLDFFPLTVNY 60 EK+V + L GR+L +ETG+LAKQAN AV+VRYGDT+VL T TAS E K++DFFPLTVNY Sbjct: 4 EKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNY 63 Query: 61 EERLYAVGKIPGGFIKREGRPSEKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQD 120 EERLYAVGKIPGGFIKREGRPSEKAIL+SRL DRPIRPLF +GFRN+VQV+++VMSVDQD Sbjct: 64 EERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQD 123 Query: 121 CAPDIAAMIGTSAALSISDVPFDGPIGGVAVGRINGGFVINPDVAQQAVSDIYVVVAGTK 180 C+ ++AAM+G+S ALSISD+PF+GPI G VGRING FVINP V QQ SDI++VVAGTK Sbjct: 124 CSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTK 183 Query: 181 DAIMMVEAEANEVPEDVMLEAIMFGHDEIRKXXXXXXXXXXXXGKEKMAVKLHTVNSEVN 240 DAI MVEA A++VPE+ MLEAIMFGHDEI++ GKEK VKL+ V++++N Sbjct: 184 DAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLN 243 Query: 241 AEVRAYAQIRLVEAVKIAEKHARQDAIDLINNETVEYFAEKYIETPELLKDVKEVLHDIV 300 VR A+ + A+++ EKHAR+DAI+ + +E++ + + + L V E+L+ IV Sbjct: 244 QSVREMAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADA-DTLGQVNEILYKIV 302 Query: 301 KDEVRRLITHDKIRPDGRKLDEIRPIECDTALLPRTHGSGLFTRGQTQILSVCTLGALGD 360 K+EVRRLIT +KIRPDGRK DEIRP+ + +L RTHGSGLFTRGQTQ LS+CTLGALGD Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362 Query: 361 VQILDGIDPAETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPSETEF 420 VQILDG+ E+KRFMHHYNFP FSVGE RP+R PGRREIGHGALGERAL VIPSE +F Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDF 422 Query: 421 PYTIRLVSEAIESNGSTSQASICASILAMMDAGVPIKAPVAGVAMGLIKDGEHVSILTDI 480 PYT+RLVSE +ESNGSTSQASIC S LAMMDAGVP+KAPVAG+AMGL+K GEH +ILTDI Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKSGEHYTILTDI 482 Query: 481 QGMEDHLGDMDFKVAGTAEGVTAIQMDIKIAGIDRKILQDALQQAKEGRMFILGKMMEAI 540 QGMEDHLGDMDFKVAGTA GVTA+QMDIKI G+ R+IL++ALQQAK GRM IL M+ I Sbjct: 483 QGMEDHLGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRMHILDHMLSVI 542 Query: 541 SEPRPSLSKYAXXXXXXXXXXXXXXXVXXXXXXXXXXXXEETGVKIDIEQDGRVFIGSSD 600 +EPR LS YA V EETGVKIDIEQDG VFI S + Sbjct: 543 AEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602 Query: 601 EAMIQKARGIIEGIVREVQVGEIYVGTVRRIEKFGAFVELIPGKDGLVHISQLSTERVAK 660 + M KA+ IIE IVREVQVGEIY G V+R+EKFGAFVEL GKDGLVHIS+L+ ERV K Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662 Query: 661 VEDVVAIGDTITVKVTEIDQQGRVNLSRKAVL 692 VEDVV IGD ITVKV EID+QGRVNLSRK +L Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVLL 694 >ref|NP_243273.1| polynucleotide phosphorylase [Bacillus halodurans] pir||G83950 polynucleotide phosphorylase pnpA [imported] - Bacillus halodurans (strain C-125) dbj|BAB06126.1| polynucleotide phosphorylase [Bacillus halodurans] Length = 704 Score = 935 bits (2416), Expect = 0.0, Method: Compositional matrix adjust. Identities = 472/693 (68%), Positives = 546/693 (78%), Gaps = 3/693 (0%) Query: 7 MQLGGRRLVLETGRLAKQANAAVMVRYGDTSVLCTVTASSEPKDLDFFPLTVNYEERLYA 66 + GR+L +ETG+LAKQAN AV+VRYGDT+VL T TAS EPKDL FFPLTVNYEERLYA Sbjct: 10 IDWAGRKLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEPKDLPFFPLTVNYEERLYA 69 Query: 67 VGKIPGGFIKREGRPSEKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCAPDIA 126 GKIPGGFIKREGRPSEKAIL+SRL DRPIRPLFPEGFRN+VQV+++VMSVDQDC+ ++A Sbjct: 70 AGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPEGFRNEVQVISIVMSVDQDCSSEMA 129 Query: 127 AMIGTSAALSISDVPFDGPIGGVAVGRINGGFVINPDVAQQAVSDIYVVVAGTKDAIMMV 186 AM+G+S ALSISD+PF+GPI GV VGRI+G FVINP Q SDI++VVAGTKDAI MV Sbjct: 130 AMVGSSLALSISDIPFEGPIAGVTVGRIDGQFVINPTQDQLEKSDIHLVVAGTKDAINMV 189 Query: 187 EAEANEVPEDVMLEAIMFGHDEIRKXXXXXXXXXXXXGKEKMAVKLHTVNSEVNAEVRAY 246 EA A EVPEDVMLEAIMFGH+EI++ GK K V L V+ + EVR Sbjct: 190 EAGAEEVPEDVMLEAIMFGHNEIKRLIEFQEKIAAEVGKSKTDVVLKQVDPMLEQEVRVK 249 Query: 247 AQIRLVEAVKIAEKHARQDAIDLINNETVEYFAEKYIETPELLKDVKEVLHDIVKDEVRR 306 A+ L +AV++ EKHARQDAI+ + ++ +E + E + P L +V E+LH IVK+EVRR Sbjct: 250 AEEDLKQAVQVPEKHARQDAIEAVMDKVLETY-EDNEDVP--LSEVNEILHKIVKEEVRR 306 Query: 307 LITHDKIRPDGRKLDEIRPIECDTALLPRTHGSGLFTRGQTQILSVCTLGALGDVQILDG 366 LIT +KIRPDGR++DEIRP+ +LPRTHGSGLFTRGQTQ LS+CTLGALGDVQILDG Sbjct: 307 LITVEKIRPDGREIDEIRPLSSQVGILPRTHGSGLFTRGQTQALSICTLGALGDVQILDG 366 Query: 367 IDPAETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPSETEFPYTIRL 426 + E+KRFMHHYNFP FSVGE P+R PGRREIGHGALGERAL VIPSE +FPYTIRL Sbjct: 367 LGIEESKRFMHHYNFPQFSVGETGPIRGPGRREIGHGALGERALEPVIPSEQDFPYTIRL 426 Query: 427 VSEAIESNGSTSQASICASILAMMDAGVPIKAPVAGVAMGLIKDGEHVSILTDIQGMEDH 486 VSE +ESNGSTSQASICAS LAMMDAGVPIKAPVAG+AMGL+K EHVS+LTDIQGMED Sbjct: 427 VSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKQDEHVSVLTDIQGMEDA 486 Query: 487 LGDMDFKVAGTAEGVTAIQMDIKIAGIDRKILQDALQQAKEGRMFILGKMMEAISEPRPS 546 LGDMDFKVAGT +GVTA+QMDIKI+GIDR IL+ AL+QA++GRM IL M+EAISE R Sbjct: 487 LGDMDFKVAGTRKGVTALQMDIKISGIDRAILEQALEQARKGRMIILDNMLEAISESRSE 546 Query: 547 LSKYAXXXXXXXXXXXXXXXVXXXXXXXXXXXXEETGVKIDIEQDGRVFIGSSDEAMIQK 606 LS YA V E+TGVKIDIEQDG ++I S+D M K Sbjct: 547 LSPYAPKILTMTINPDKIRDVIGPSGKMINKIIEDTGVKIDIEQDGTIYISSADTNMNNK 606 Query: 607 ARGIIEGIVREVQVGEIYVGTVRRIEKFGAFVELIPGKDGLVHISQLSTERVAKVEDVVA 666 AR IIE IVREV+VG++Y+GTV+RIEKFGAFVEL GKDGLVHISQL+ ERV KVEDVV Sbjct: 607 AREIIEDIVREVEVGQMYLGTVKRIEKFGAFVELFKGKDGLVHISQLAEERVNKVEDVVK 666 Query: 667 IGDTITVKVTEIDQQGRVNLSRKAVLTSEGAAK 699 IGD I VKV EID QGRVNLSRKAVL + A+ Sbjct: 667 IGDEILVKVMEIDNQGRVNLSRKAVLKEQKKAE 699 >ref|NP_657775.1| RNase_PH, 3' exoribonuclease family [Bacillus anthracis A2012] ref|NP_846188.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. Ames] gb|AAP27674.1| polyribonucleotide nucleotidyltransferase [Bacillus anthracis str. Ames] Length = 712 Score = 934 bits (2414), Expect = 0.0, Method: Compositional matrix adjust. Identities = 465/692 (67%), Positives = 548/692 (79%), Gaps = 2/692 (0%) Query: 2 EKRV-EMQLGGRRLVLETGRLAKQANAAVMVRYGDTSVLCTVTASSEPKDLDFFPLTVNY 60 EK+V + L GR+L +ETG+LAKQAN AV+VRYGDT+VL T TAS E K++DFFPLTVNY Sbjct: 4 EKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNY 63 Query: 61 EERLYAVGKIPGGFIKREGRPSEKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQD 120 EERLYAVGKIPGGFIKREGRPSEKAIL+SRL DRPIRPLF +GFRN+VQV+N+VMSVDQD Sbjct: 64 EERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVNIVMSVDQD 123 Query: 121 CAPDIAAMIGTSAALSISDVPFDGPIGGVAVGRINGGFVINPDVAQQAVSDIYVVVAGTK 180 C+ ++AAM+G+S ALSISD+PF+GPI G VGRING FVINP V QQ SDI++VVAGTK Sbjct: 124 CSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTK 183 Query: 181 DAIMMVEAEANEVPEDVMLEAIMFGHDEIRKXXXXXXXXXXXXGKEKMAVKLHTVNSEVN 240 DAI MVEA A++VPE+ MLEAIMFGHDEI++ GKEK VKL+ V++++N Sbjct: 184 DAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLN 243 Query: 241 AEVRAYAQIRLVEAVKIAEKHARQDAIDLINNETVEYFAEKYIETPELLKDVKEVLHDIV 300 VR A+ + A+++ EKHAR+DAI+ + +E++ + + + L V E+L+ IV Sbjct: 244 QAVREMAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADA-DTLGQVNEILYKIV 302 Query: 301 KDEVRRLITHDKIRPDGRKLDEIRPIECDTALLPRTHGSGLFTRGQTQILSVCTLGALGD 360 K+EVRRLIT +KIRPDGRK DEIRP+ + +L RTHGSGLFTRGQTQ LS+CTLGALGD Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362 Query: 361 VQILDGIDPAETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPSETEF 420 VQILDG+ E+KRFMHHYNFP FSVGE RP+R PGRREIGHGALGERAL VIPSE +F Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEKDF 422 Query: 421 PYTIRLVSEAIESNGSTSQASICASILAMMDAGVPIKAPVAGVAMGLIKDGEHVSILTDI 480 PYT+RLVSE +ESNGSTSQASIC S LAMMDAGVP+KAPVAG+AMGL+K GEH +IL+DI Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDI 482 Query: 481 QGMEDHLGDMDFKVAGTAEGVTAIQMDIKIAGIDRKILQDALQQAKEGRMFILGKMMEAI 540 QGMEDHLGDMDFKVAGTA GVTA+QMDIKI G+ R+IL++ALQQAK GR+ IL M+ I Sbjct: 483 QGMEDHLGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVI 542 Query: 541 SEPRPSLSKYAXXXXXXXXXXXXXXXVXXXXXXXXXXXXEETGVKIDIEQDGRVFIGSSD 600 +EPR LS YA V EETGVKIDIEQDG VFI S + Sbjct: 543 AEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602 Query: 601 EAMIQKARGIIEGIVREVQVGEIYVGTVRRIEKFGAFVELIPGKDGLVHISQLSTERVAK 660 + M KA+ IIE IVREVQVGEIY G V+R+EKFGAFVEL GKDGLVHIS+L+ ERV K Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662 Query: 661 VEDVVAIGDTITVKVTEIDQQGRVNLSRKAVL 692 VEDVV IGD ITVKV EID+QGRVNLSRK +L Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVLL 694 >ref|NP_833527.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC 14579] gb|AAP10728.1| Polyribonucleotide nucleotidyltransferase [Bacillus cereus ATCC 14579] Length = 712 Score = 930 bits (2403), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/700 (66%), Positives = 550/700 (78%), Gaps = 2/700 (0%) Query: 2 EKRV-EMQLGGRRLVLETGRLAKQANAAVMVRYGDTSVLCTVTASSEPKDLDFFPLTVNY 60 EK+V + L GR+L +ETG+LAKQAN AV+VRYGDT+VL T TAS E K++DFFPLTVNY Sbjct: 4 EKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLTVNY 63 Query: 61 EERLYAVGKIPGGFIKREGRPSEKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQD 120 EERLYAVGKIPGGFIKREGRPSEKAIL+SRL DRPIRPLF +GFRN+VQV+++VMSVDQD Sbjct: 64 EERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSVDQD 123 Query: 121 CAPDIAAMIGTSAALSISDVPFDGPIGGVAVGRINGGFVINPDVAQQAVSDIYVVVAGTK 180 C+ ++AAM+G+S ALSISD+PF+GPI G VGRING FVINP V QQ SDI++VVAGTK Sbjct: 124 CSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVAGTK 183 Query: 181 DAIMMVEAEANEVPEDVMLEAIMFGHDEIRKXXXXXXXXXXXXGKEKMAVKLHTVNSEVN 240 DAI MVEA A++VPE+ MLEAIMFGHDEI++ GKEK VKL+ V++++N Sbjct: 184 DAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDADLN 243 Query: 241 AEVRAYAQIRLVEAVKIAEKHARQDAIDLINNETVEYFAEKYIETPELLKDVKEVLHDIV 300 VR A+ + A+++ EKHAR+DAI+ + +E++ + + + L V E+L+ IV Sbjct: 244 QAVREMAEEDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADA-DTLGQVNEILYKIV 302 Query: 301 KDEVRRLITHDKIRPDGRKLDEIRPIECDTALLPRTHGSGLFTRGQTQILSVCTLGALGD 360 K+EVRRLIT +KIRPDGRK DEIRP+ + +L RTHGSGLFTRGQTQ LS+CTLGALGD Sbjct: 303 KEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGALGD 362 Query: 361 VQILDGIDPAETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPSETEF 420 VQILDG+ E+KRFMHHYNFP FSVGE RP+R PGRREIGHGA+GERAL VIPSE +F Sbjct: 363 VQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGAIGERALEPVIPSEKDF 422 Query: 421 PYTIRLVSEAIESNGSTSQASICASILAMMDAGVPIKAPVAGVAMGLIKDGEHVSILTDI 480 PYT+RLVSE +ESNGSTSQASIC S LAMMDAGVP+KAPVAG+AMGL+K GEH +IL+DI Sbjct: 423 PYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILSDI 482 Query: 481 QGMEDHLGDMDFKVAGTAEGVTAIQMDIKIAGIDRKILQDALQQAKEGRMFILGKMMEAI 540 QGMEDHLGDMDFKVAGTA+GVTA+QMDIKI G+ R+IL++ALQQAK GR+ IL M+ I Sbjct: 483 QGMEDHLGDMDFKVAGTAQGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLSVI 542 Query: 541 SEPRPSLSKYAXXXXXXXXXXXXXXXVXXXXXXXXXXXXEETGVKIDIEQDGRVFIGSSD 600 EPR LS YA V EETGVKIDIEQDG VFI S + Sbjct: 543 PEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISSIN 602 Query: 601 EAMIQKARGIIEGIVREVQVGEIYVGTVRRIEKFGAFVELIPGKDGLVHISQLSTERVAK 660 + M KA+ IIE IVREVQVGEIY V+R+EKFGAFVEL GKDGLVHIS+L+ ERV K Sbjct: 603 QEMNDKAKKIIEDIVREVQVGEIYEAKVKRVEKFGAFVELFSGKDGLVHISELALERVGK 662 Query: 661 VEDVVAIGDTITVKVTEIDQQGRVNLSRKAVLTSEGAAKA 700 VEDVV IGD ITVKV EID+QGRVNLSRK +L E +A Sbjct: 663 VEDVVKIGDVITVKVIEIDKQGRVNLSRKVLLKEEQEKEA 702 >ref|NP_389551.1| polynucleotide phosphorylase (PNPase) [Bacillus subtilis] sp|P50849|PNP_BACSU Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (Vegetative protein 15) (VEG15) pir||S70691 polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) alpha chain pnpA - Bacillus subtilis gb|AAC43595.1| polynucleotide phosphorylase emb|CAB13542.1| polynucleotide phosphorylase (PNPase) [Bacillus subtilis subsp. subtilis str. 168] prf||2210369A polynucleotide phosphorylase Length = 705 Score = 926 bits (2393), Expect = 0.0, Method: Compositional matrix adjust. Identities = 455/686 (66%), Positives = 547/686 (79%), Gaps = 1/686 (0%) Query: 7 MQLGGRRLVLETGRLAKQANAAVMVRYGDTSVLCTVTASSEPKDLDFFPLTVNYEERLYA 66 + GR L +ETG+LAKQAN AVM+RYGDT+VL T TAS EPK LDFFPLTVNYEERLYA Sbjct: 10 IDWAGRTLTVETGQLAKQANGAVMIRYGDTAVLSTATASKEPKPLDFFPLTVNYEERLYA 69 Query: 67 VGKIPGGFIKREGRPSEKAILSSRLTDRPIRPLFPEGFRNDVQVLNLVMSVDQDCAPDIA 126 VGKIPGGFIKREGRPSEKA+L+SRL DRPIRPLF +GFRN+VQV+++VMSVDQ+C+ ++A Sbjct: 70 VGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSVDQNCSSEMA 129 Query: 127 AMIGTSAALSISDVPFDGPIGGVAVGRINGGFVINPDVAQQAVSDIYVVVAGTKDAIMMV 186 AM G+S ALS+SD+PF+GPI GV VGRI+ F+INP V Q SDI +VVAGTKDAI MV Sbjct: 130 AMFGSSLALSVSDIPFEGPIAGVTVGRIDDQFIINPTVDQLEKSDINLVVAGTKDAINMV 189 Query: 187 EAEANEVPEDVMLEAIMFGHDEIRKXXXXXXXXXXXXGKEKMAVKLHTVNSEVNAEVRAY 246 EA A+EVPE++MLEAIMFGH+EI++ GKEK +KL ++ E+N +V+A Sbjct: 190 EAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKSEIKLFEIDEELNEKVKAL 249 Query: 247 AQIRLVEAVKIAEKHARQDAIDLINNETVEYFAEKYIETPELLKDVKEVLHDIVKDEVRR 306 A+ L++A+++ EKHAR+DAI+ + N V F ++ + +K VK++L +VK+EVRR Sbjct: 250 AEEDLLKAIQVHEKHAREDAINEVKNAVVAKFEDEE-HDEDTIKQVKQILSKLVKNEVRR 308 Query: 307 LITHDKIRPDGRKLDEIRPIECDTALLPRTHGSGLFTRGQTQILSVCTLGALGDVQILDG 366 LIT +K+RPDGR +D+IRP+ + LLPRTHGSGLFTRGQTQ LSVCTLGALGDVQILDG Sbjct: 309 LITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGDVQILDG 368 Query: 367 IDPAETKRFMHHYNFPPFSVGEARPLRAPGRREIGHGALGERALSKVIPSETEFPYTIRL 426 + E+KRFMHHYNFP FSVGE P+R PGRREIGHGALGERAL VIPSE +FPYT+RL Sbjct: 369 LGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEKDFPYTVRL 428 Query: 427 VSEAIESNGSTSQASICASILAMMDAGVPIKAPVAGVAMGLIKDGEHVSILTDIQGMEDH 486 VSE +ESNGSTSQASICAS LAMMDAGVPIKAPVAG+AMGL+K GEH ++LTDIQGMED Sbjct: 429 VSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEHYTVLTDIQGMEDA 488 Query: 487 LGDMDFKVAGTAEGVTAIQMDIKIAGIDRKILQDALQQAKEGRMFILGKMMEAISEPRPS 546 LGDMDFKVAGT +GVTA+QMDIKI G+ R+IL++ALQQAK+GRM IL M+ +SE R Sbjct: 489 LGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLATLSESRKE 548 Query: 547 LSKYAXXXXXXXXXXXXXXXVXXXXXXXXXXXXEETGVKIDIEQDGRVFIGSSDEAMIQK 606 LS+YA V EETGVKIDIEQDG +FI S+DE+ QK Sbjct: 549 LSRYAPKILTMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTIFISSTDESGNQK 608 Query: 607 ARGIIEGIVREVQVGEIYVGTVRRIEKFGAFVELIPGKDGLVHISQLSTERVAKVEDVVA 666 A+ IIE +VREV+VG++Y+G V+RIEKFGAFVE+ GKDGLVHIS+L+ ERV KVEDVV Sbjct: 609 AKKIIEDLVREVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERVGKVEDVVK 668 Query: 667 IGDTITVKVTEIDQQGRVNLSRKAVL 692 IGD I VKVTEID+QGRVNLSRKAVL Sbjct: 669 IGDEILVKVTEIDKQGRVNLSRKAVL 694 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.136 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 885,969,759 Number of extensions: 34983427 Number of successful extensions: 103383 Number of sequences better than 1.0e-05: 1730 Number of HSP's gapped: 101324 Number of HSP's successfully gapped: 1823 Length of query: 700 Length of database: 757,237,578 Length adjustment: 133 Effective length of query: 567 Effective length of database: 396,129,411 Effective search space: 224605376037 Effective search space used: 224605376037 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)