BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0584.0067.p (361 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAF04310.1| SalE [Acinetobacter sp. ADP1] 243 4e-63 gb|EAJ77887.1| unknown [environmental sequence] 110 3e-23 ref|NP_980782.1| conserved hypothetical protein [Bacillus cereus... 95 2e-18 gb|EAI08490.1| unknown [environmental sequence] 89 2e-16 gb|EAI64775.1| unknown [environmental sequence] 86 1e-15 >gb|AAF04310.1| SalE [Acinetobacter sp. ADP1] Length = 239 Score = 243 bits (621), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 115/242 (47%), Positives = 162/242 (66%), Gaps = 4/242 (1%) Query: 120 LTFVLVHGAWVDASFWDGIAAELRKMGHTVYTPEYAGHGADPDKNVTHEQETQSVVDFIK 179 +T+VLVHG+W D S W+ +A LR GHTV+ P AGHG + D+NVTH Q +QS+ D+I Sbjct: 2 ITYVLVHGSWHDGSLWEPVATHLRAQGHTVHCPTVAGHGPNADRNVTHAQCSQSIADYIV 61 Query: 180 QKDLHHIILLAHSFGGTVIQKTAEQVPDRLKRLVFFDAFAPLDGQSAADQFPPPAAELFL 239 + DL I+LL HS+GGT+I K AE +P+R++RL++++AF DG++ D P ELF Sbjct: 62 KHDLSEIVLLGHSYGGTIISKVAEAIPERIQRLIYWNAFVLQDGENMFDNMPEAYYELFT 121 Query: 240 GLSKASGNNTIMLPFDLFRDTFVNTATLEQAKLLYKKVIPEPAGPLFQKLDLKKFYSLKT 299 L+ ASG+NT++LP++++R F+N A + A+ YK + PEP P +LDLKKFY+L Sbjct: 122 SLAAASGDNTVLLPYEVWRHAFINDADDQMAEETYKMLTPEPCQPFHDRLDLKKFYTLNI 181 Query: 300 PKSYLYLTEDIAMPELPSYGWHPVQSGHLGVYRFIEGTGDHMAAPHYAPKEIADKIVQAS 359 PKSYL TED A LP+ WHP S LG ++ +E G H A P+E+A KI++AS Sbjct: 182 PKSYLNCTEDQA---LPAGFWHPKMSNRLGEFKLVEMGGSHEAM-FTRPQELATKIIEAS 237 Query: 360 RD 361 D Sbjct: 238 HD 239 >gb|EAJ77887.1| unknown [environmental sequence] Length = 212 Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 72/216 (33%), Positives = 109/216 (50%), Gaps = 6/216 (2%) Query: 148 TVYTPEYAGHGADPDKNVTHEQE-TQSVVDFIKQKDLHHIILLAHSFGGTVIQKTAEQVP 206 TV+ P AG+ D+ T + S+ FI+ + L + L+ HS+GG VI ++P Sbjct: 1 TVHCPTLAGNRPGDDRAATGLADAVDSLAAFIEGQGLTDVRLVGHSYGGMVISHMPARLP 60 Query: 207 DRLKRLVFFDAFAPLDGQSAADQFPPPAAELFLGLSKASGNNTIMLPFDLFRDTFVNTAT 266 R++RLV+++AF P G+ D PP LF ++ AS N +MLP+ ++R+ F+N A Sbjct: 61 GRIRRLVYWNAFVPQPGECLNDLVPPHYRALFDQVA-ASNGNAVMLPYPIWREAFINDAD 119 Query: 267 LEQAKLLYKKVIPEPAGPLFQKLDLK-KFYSLKTPKSYLYLTEDIAMPELPSYGWHPVQS 325 A+ Y + P P + L +L+ KSYL +D A+P S WHP S Sbjct: 120 AALAQSTYALLNPHPYRTFTEPAQLPVPLAALEVGKSYLNAQQDTALPH--SLPWHPRLS 177 Query: 326 GHLGVYRFIEGTGDHMAAPHYAPKEIADKIVQASRD 361 LG++R +E G H P A I +A RD Sbjct: 178 ERLGLFRLVECAGSHELC-FSDPASAALHIERAGRD 212 >ref|NP_980782.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS43390.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 231 Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/136 (38%), Positives = 72/136 (52%), Gaps = 3/136 (2%) Query: 121 TFVLVHGAWVDASFWDGIAAELRKMGHTVYTPEYAGHGADP---DKNVTHEQETQSVVDF 177 TFVLVHGAW W +A LR+ GH+VYTP G G N+ + Q +V+ Sbjct: 3 TFVLVHGAWDGGYVWKKLAKLLREEGHSVYTPTLTGLGERTHLMQPNIGLKTFIQDIVNT 62 Query: 178 IKQKDLHHIILLAHSFGGTVIQKTAEQVPDRLKRLVFFDAFAPLDGQSAADQFPPPAAEL 237 IK + L +IL+ HS+ G VI AE++P+ +K LV+ DA P +G S D P A Sbjct: 63 IKYESLRDVILVGHSYSGMVITGVAEEIPEFIKELVYVDAMLPENGDSVMDISGPEMAAH 122 Query: 238 FLGLSKASGNNTIMLP 253 F+ K G +LP Sbjct: 123 FIEEVKVYGEGWRVLP 138 >gb|EAI08490.1| unknown [environmental sequence] Length = 216 Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 6/190 (3%) Query: 122 FVLVHGAWVDASFWDGIAAELRKMGHTVYTPEYAGHGADP---DKNVTHEQETQSVVDFI 178 F+L+HGAW W+ I+ L G++V TP G G +T + + VV+ I Sbjct: 8 FLLIHGAWHGGWVWNEISEILSYQGYSVSTPTLTGLGEKKHLLSSKITIDMFIEDVVNHI 67 Query: 179 KQKDLHHIILLAHSFGGTVIQKTAEQVPDRLKRLVFFDAFAPLDGQSAADQFPPPAAELF 238 ++L +IIL+ HSF G+VI A+++ DR+++L++FDA DGQ D P Sbjct: 68 IFENLDNIILVGHSFAGSVISGVADKLKDRIQKLIYFDAVILKDGQKPFDIVPKELVNQR 127 Query: 239 LGLSKASGNNTIMLPFDLFRDTFVNTATLEQAKLLYKKVIPEPAGPLFQKLDLKKFYSLK 298 + L+K GN I +P D F +++A LL +K+ P P KL +K Sbjct: 128 IELAKRFGNG-ISIPAP-SADAF-GVFDVKKALLLEEKLTPHPLSTYQSKLTIKNEIGNG 184 Query: 299 TPKSYLYLTE 308 P Y++ + Sbjct: 185 IPLFYIFCND 194 >gb|EAI64775.1| unknown [environmental sequence] Length = 231 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 104/240 (43%), Gaps = 24/240 (10%) Query: 117 SGALTFVLVHGAWVDASFWDGIAAELRKMGHTVYTPEYAGHGADP---DKNVTHEQETQS 173 S L F+L+HG+W W+ + +L + G V P G G K +T + Sbjct: 2 SDKLHFLLIHGSWHGGWIWNDLRIKLIEKGFDVSCPTLTGLGERKHLISKKITIDTFIHD 61 Query: 174 VVDFIKQKDLHHIILLAHSFGGTVIQKTAEQVPDRLKRLVFFDAFAPLDGQSAADQFPPP 233 V + I DL +I+L+ HSF G++I A+++ ++K L++FD+ DG++ D P Sbjct: 62 VENHITFHDLENIVLVGHSFAGSIISGIADRMKSKIKLLIYFDSLILFDGETPFDTLPKQ 121 Query: 234 AAELFLGLSKASGNNTIMLP------FDLFRDTFVNTATLEQAKLLYKKVIPEPAGPLFQ 287 + LSK ++ I +P F +F ++Q+K L K+ P P Sbjct: 122 IVRDRINLSKLY-DDGISIPAPSPDKFGIF--------DIKQSKYLKSKLTPMPLSSFKS 172 Query: 288 KLDLKKFYSLKTPKSYLYLTEDIAMPELPSYGWHPVQSGHLG--VYRFIEGTGDHMAAPH 345 KL LK P YL PE +H + LG VY G ++ PH Sbjct: 173 KLTLKNKIGNNLPLCYLKCNN----PEYRILEYHRKRVEELGWSVYDLNAGHDAMLSNPH 228 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.137 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 563,396,375 Number of extensions: 24021732 Number of successful extensions: 54593 Number of sequences better than 1.0e-05: 61 Number of HSP's gapped: 54804 Number of HSP's successfully gapped: 61 Length of query: 361 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 234 Effective length of database: 412,420,005 Effective search space: 96506281170 Effective search space used: 96506281170 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)