BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0584.0056.p
         (100 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_866824.1| conserved hypothetical protein [Pirellula sp. 1...    63   3e-09
gb|AAB81983.1| unknown [Vibrio cholerae]                               62   4e-09
gb|EAI89723.1| unknown [environmental sequence]                        55   4e-07
gb|AAO39108.1| AdmN [Pantoea agglomerans]                              55   7e-07
dbj|BAB92723.1| B1108H10.8 [Oryza sativa (japonica cultivar-group)]    52   5e-06

>ref|NP_866824.1| conserved hypothetical protein [Pirellula sp. 1]
 emb|CAD74364.1| conserved hypothetical protein [Pirellula sp.]
          Length = 131

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 1/97 (1%)

Query: 1   MYEHLVVFRFNEQYKPGNGEQLVQTLLALKDSIPGIVELTAGVNETEETENIHGYTLGLR 60
           M  H+V+F F +     + +++V     L + IP I +   G N + E  N  G T    
Sbjct: 32  MLRHVVMFGFKDASSEADVQKVVDAFRNLPNEIPEIADFEYGTNNSPEGLN-DGLTHCFL 90

Query: 61  VTFSDQEALRKYGPHPAHQHFVGLLEGIIENVVVVDY 97
           VTFS ++    Y PHPAH+ FV +L+  +E VVV+DY
Sbjct: 91  VTFSSEKDREAYLPHPAHKAFVEVLKPHLEKVVVIDY 127


>gb|AAB81983.1| unknown [Vibrio cholerae]
          Length = 98

 Score = 62.4 bits (150), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 56/99 (56%), Gaps = 1/99 (1%)

Query: 1  MYEHLVVFRFNEQYKPGNGEQLVQTLLALKDSIPGIVELTAGVNETEETENIHGYTLGLR 60
          M  H+++ +F    +P   E+L     ++ D + G++ +  G N++ E +N  GY+  + 
Sbjct: 1  MIRHILLIKFKASAEPSEIEKLKGLFASMPDKVDGVLSVEWGENDSPEGKN-QGYSHSVL 59

Query: 61 VTFSDQEALRKYGPHPAHQHFVGLLEGIIENVVVVDYPV 99
          +TFSD++  + Y PHP H+    +   ++E++VV DY +
Sbjct: 60 MTFSDEKGRQNYLPHPEHEVLKKVFRPLLEDIVVFDYTI 98


>gb|EAI89723.1| unknown [environmental sequence]
          Length = 106

 Score = 55.5 bits (132), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 1  MYEHLVVFRFNEQYKPGNGEQLVQTLLALKDSIPGIVELTAGVNETEETENIHGYTLGLR 60
          M  H+++  F    +P   + +    LA+   + G++ +  G +++ E     G+T  + 
Sbjct: 1  MIRHILLIAFKPGTQPAQIDAVRAAFLAIPHQVSGVLAVEWGRDDSPEGRA-EGFTHSVL 59

Query: 61 VTFSDQEALRKYGPHPAHQHFVGLLEGIIENVVVVDY 97
          +TF+D+ A ++Y PHP H     +   ++E ++V+DY
Sbjct: 60 MTFADEAARQRYLPHPDHDALKAIFRPVLERIIVLDY 96


>gb|AAO39108.1| AdmN [Pantoea agglomerans]
          Length = 104

 Score = 54.7 bits (130), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 2/100 (2%)

Query: 1  MYEHLVVFRFNEQYKPGNGEQLVQTLLALKDSIPGIVELTAGVNETEETENIHGYTLGLR 60
          MY+H+++F+F          +L+  L  LKD IPGIV+ + G N+ + T N+ G+     
Sbjct: 1  MYKHIILFKFQTSVSTAEALELLHQLGELKDKIPGIVKYSYGKNDGDNTHNL-GFEYAFV 59

Query: 61 VTFSDQEALRKYGPHPAHQHFVG-LLEGIIENVVVVDYPV 99
          + FS ++    Y  +  HQ F+   L   I   +V D  V
Sbjct: 60 MEFSSKQDRDAYQINEHHQTFINKTLNSAISEAIVFDMVV 99


>dbj|BAB92723.1| B1108H10.8 [Oryza sativa (japonica cultivar-group)]
          Length = 113

 Score = 51.6 bits (122), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 3/96 (3%)

Query: 3   EHLVVFRFNEQYKPGNGEQLVQTLLALKDSIPGIVELTAGVNETEETENIH-GYTLGLRV 61
           +H+++ RF E   P   +QL++    L D +P +     G + +   EN+H G+T     
Sbjct: 12  KHILLARFKEDVAPERLDQLIRGYAGLVDLVPSMKAFHWGTDVS--IENMHQGFTHVFES 69

Query: 62  TFSDQEALRKYGPHPAHQHFVGLLEGIIENVVVVDY 97
           TF   E +++Y  HPAH  F      ++E  +++DY
Sbjct: 70  TFESTEGVKEYIEHPAHVEFANEFLPVLEKTLIIDY 105


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.319    0.140    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 157,055,693
Number of extensions: 5617690
Number of successful extensions: 12673
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 12682
Number of HSP's successfully gapped: 5
Length of query: 100
Length of database: 757,237,578
Length adjustment: 67
Effective length of query: 33
Effective length of database: 575,325,945
Effective search space: 18985756185
Effective search space used: 18985756185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)