BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0584.0055.p (165 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_621736.1| Signal peptidase I [Thermoanaerobacter tengcong... 155 3e-37 ref|NP_925427.1| signal peptidase I [Gloeobacter violaceus] >gi|... 141 6e-33 ref|NP_924969.1| signal peptidase I [Gloeobacter violaceus] >gi|... 139 3e-32 ref|NP_440503.1| leader peptidase I [Synechocystis sp. PCC 6803]... 139 3e-32 sp|Q51876|LEP_PHOLA Signal peptidase I (SPase I) (Leader peptida... 137 1e-31 >ref|NP_621736.1| Signal peptidase I [Thermoanaerobacter tengcongensis] gb|AAM23340.1| Signal peptidase I [Thermoanaerobacter tengcongensis] Length = 176 Score = 155 bits (393), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 75/156 (48%), Positives = 106/156 (67%), Gaps = 3/156 (1%) Query: 7 QWVPSIAIGIVLSLFIRTYVAEAMRVPTGSMIPTIQINDRLVVEKMLW-LTSLKHGDIVV 65 W+ +I + ++LFIRTYV E + VPTGSM+ TI IND+ +V K ++ +K GDIVV Sbjct: 11 SWIFTILLAFAIALFIRTYVFELVDVPTGSMMDTIHINDKFIVNKFIYRFEPVKRGDIVV 70 Query: 66 FNPPVPGDEQKKYVKRLMGLPGDTLEIKDGALYRNGEQVDEPYLQEKMNYRFGPVTVPAD 125 F P + + +VKR++G+ GD +EIKDG L RNG+ V+EPY++E M FGP VP Sbjct: 71 FR--FPDNPKVNFVKRVIGIGGDVIEIKDGKLIRNGKVVNEPYVKEPMKGNFGPYVVPPG 128 Query: 126 HYFFLGDNRNTSYDAHLWSTPFVAKDKLIGKVLLDV 161 HYF LGDNRN S D+ W +V+KD+++GKV+ + Sbjct: 129 HYFMLGDNRNESMDSRFWQHKYVSKDQILGKVVFRI 164 >ref|NP_925427.1| signal peptidase I [Gloeobacter violaceus] dbj|BAC90422.1| signal peptidase I [Gloeobacter violaceus PCC 7421] Length = 197 Score = 141 bits (355), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 67/160 (41%), Positives = 108/160 (67%), Gaps = 5/160 (3%) Query: 3 KFLKQWVPSIAIGIVLSLFIRTYVAEAMRVPTGSMIPTIQINDRLVVEKMLW-LTSLKHG 61 K ++ + SIA+ +VL+ I+T+ A+A +P+GSM PT+ INDRL+VEK+ + ++ + G Sbjct: 28 KSQRENIQSIAVALVLTFTIQTFAAQAFYIPSGSMEPTLLINDRLMVEKITYDFSTPERG 87 Query: 62 DIVVFNPPVP--GDEQKKYVKRLMGLPGDTLEIKDGALYRNGEQVDEPYLQEKMNYRFGP 119 I+VF PP + ++KR++GLPGDT+E+K G ++ NG+ +DE Y+ E Y P Sbjct: 88 QIIVFTPPKNHFNSNDQPFIKRVIGLPGDTVEVKAGKVFINGKALDEKYIAEPPAYVMPP 147 Query: 120 VTVPADHYFFLGDNRNTSYDAHLWSTPFVAKDKLIGKVLL 159 V VPAD +F +GDNRN S+D+H+W F+ + +IG+ + Sbjct: 148 VKVPADQFFVMGDNRNNSFDSHIWG--FLPRQNVIGRAIF 185 >ref|NP_924969.1| signal peptidase I [Gloeobacter violaceus] dbj|BAC89964.1| signal peptidase I [Gloeobacter violaceus PCC 7421] Length = 191 Score = 139 bits (349), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 63/150 (42%), Positives = 102/150 (68%), Gaps = 3/150 (2%) Query: 11 SIAIGIVLSLFIRTYVAEAMRVPTGSMIPTIQINDRLVVEKMLW-LTSLKHGDIVVFNPP 69 +I + + L+LFIR++VAEA +P+GSM PT++I+DRL+VEK+ + + G ++VF PP Sbjct: 32 TIVLAVFLALFIRSFVAEARYIPSGSMEPTLRIDDRLIVEKLSYEFQQPERGQVIVFTPP 91 Query: 70 VPGDEQKKYVKRLMGLPGDTLEIKDGALYRNGEQVDEPYLQEKMNYRFGPVTVPADHYFF 129 + + ++KR++GLPGDT+E+K+G + NG ++EPY+ Y VPA H+F Sbjct: 92 KRTNIDQAFIKRVIGLPGDTIEVKNGKVLLNGRTLNEPYIATPPAYILPRQKVPAGHFFV 151 Query: 130 LGDNRNTSYDAHLWSTPFVAKDKLIGKVLL 159 +GDNRN S+D+HLW F+ + +IG+ + Sbjct: 152 MGDNRNNSFDSHLWG--FLPRQNVIGRAVF 179 >ref|NP_440503.1| leader peptidase I [Synechocystis sp. PCC 6803] sp|P73157|LEP2_SYNY3 Probable signal peptidase I-2 (SPase I-2) (Leader peptidase I-2) pir||S75269 signal peptidase I (EC 3.4.21.89) slr1377 - Synechocystis sp. (strain PCC 6803) dbj|BAA17183.1| leader peptidase I [Synechocystis sp. PCC 6803] Length = 218 Score = 139 bits (349), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 67/153 (43%), Positives = 101/153 (66%), Gaps = 6/153 (3%) Query: 11 SIAIGIVLSLFIRTYVAEAMRVPTGSMIPTIQINDRLVVEKMLW-LTSLKHGDIVVFNPP 69 ++ ++L++ IRT+VAEA +P+ SM PT+QINDRL++EK+ + L + G+IVVFNP Sbjct: 27 TMVTAVILAIGIRTFVAEARYIPSSSMEPTLQINDRLIIEKISYRLRDPERGEIVVFNPT 86 Query: 70 ---VPGDEQKKYVKRLMGLPGDTLEIKDGALYRNGEQVDEPYLQEKMNYRFGPVTVPADH 126 + ++KR++GLPGD + + G +Y NG+ +DE Y+ Y +GPV VP D Sbjct: 87 DALKAKNFHDAFIKRIIGLPGDEVRVSQGNVYVNGKMLDENYIAAPPAYEYGPVKVPDDQ 146 Query: 127 YFFLGDNRNTSYDAHLWSTPFVAKDKLIGKVLL 159 Y LGDNRN SYD+H W FV ++KL+G+ + Sbjct: 147 YLVLGDNRNNSYDSHYWG--FVPREKLLGRAFV 177 >sp|Q51876|LEP_PHOLA Signal peptidase I (SPase I) (Leader peptidase I) pir||S51921 signal peptidase I (EC 3.4.21.89) [similarity] - Phormidium laminosum emb|CAA57518.1| leader peptidase I [Phormidium laminosum] Length = 203 Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 65/161 (40%), Positives = 110/161 (68%), Gaps = 8/161 (4%) Query: 5 LKQWVPSIAIGIVLSLFIRTYVAEAMRVPTGSMIPTIQINDRLVVEKMLW-LTSLKHGDI 63 L + + +I + +VL+L IRT+VAEA +P+ SM+PT+++NDRL+VEK+ + + GDI Sbjct: 28 LMEGIKTIGLSVVLALGIRTFVAEARYIPSESMLPTLEVNDRLIVEKISYHFNPPRRGDI 87 Query: 64 VVFNPPVPGDEQ-----KKYVKRLMGLPGDTLEIKDGALYRNGEQVDEPYLQEKMNYRFG 118 +VF+P +Q + ++KR++GLPG+T+++ G + NG+ ++E Y+Q +Y++G Sbjct: 88 IVFHPTEALKQQNPSLNEAFIKRVIGLPGETVQVTGGRVLINGQPLEENYIQSPPDYQWG 147 Query: 119 PVTVPADHYFFLGDNRNTSYDAHLWSTPFVAKDKLIGKVLL 159 P VPAD + LGDNRN SYD+H W +V + +IG+ ++ Sbjct: 148 PEKVPADSFLVLGDNRNNSYDSHFWG--YVPRQNIIGRAVV 186 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.141 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 276,354,781 Number of extensions: 11865787 Number of successful extensions: 25220 Number of sequences better than 1.0e-05: 540 Number of HSP's gapped: 24587 Number of HSP's successfully gapped: 552 Length of query: 165 Length of database: 757,237,578 Length adjustment: 116 Effective length of query: 49 Effective length of database: 442,286,094 Effective search space: 21672018606 Effective search space used: 21672018606 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 121 (51.2 bits)