BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0584.0030.p (132 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_241603.1| cinnamoyl ester hydrolase [Bacillus halodurans]... 158 3e-38 ref|NP_388410.1| similar to hypothetical proteins [Bacillus subt... 157 5e-38 dbj|BAA19363.1| FUNCTION UNKNOWN, SIMILAR PRODUCT IN E. COLI, H.... 157 7e-38 ref|NP_391934.1| similar to hypothetical proteins [Bacillus subt... 156 1e-37 ref|NP_833059.1| Transcriptional regulator, MarR family [Bacillu... 134 6e-31 >ref|NP_241603.1| cinnamoyl ester hydrolase [Bacillus halodurans] pir||A83742 cinnamoyl ester hydrolase BH0737 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04456.1| cinnamoyl ester hydrolase [Bacillus halodurans] Length = 118 Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 79/126 (62%), Positives = 98/126 (77%), Gaps = 10/126 (7%) Query: 1 MRDRKGGFGNSPGCDQAACPVEFTLDXXXXXXXGGKWKGVLLYHMMEEKKRFSEFRRICP 60 MR+RK G+G S GC PVE TLD GGKWKGV+LY+++EEK+RF+E RR+ P Sbjct: 1 MRNRKSGYGCSEGC-----PVEATLDVI-----GGKWKGVILYYLLEEKRRFNELRRLMP 50 Query: 61 GITQRMLTLQLRELEEDGVVHREVYQQVPPKVEYSLTEFGRTLIPIIRLMRDWGVEYQTK 120 GITQR+L+LQLRELE+DG+VHREV+ +VPP+VEYS+TEFGRTL PII MRDWG EY+T+ Sbjct: 51 GITQRILSLQLRELEKDGIVHREVFPEVPPRVEYSITEFGRTLEPIINQMRDWGEEYKTR 110 Query: 121 QHSVES 126 E Sbjct: 111 IQEKED 116 >ref|NP_388410.1| similar to hypothetical proteins [Bacillus subtilis] sp|P96673|YDEP_BACSU Hypothetical protein ydeP pir||B69779 conserved hypothetical protein ydeP - Bacillus subtilis emb|CAB12336.1| ydeP [Bacillus subtilis subsp. subtilis str. 168] Length = 128 Score = 157 bits (398), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 79/127 (62%), Positives = 97/127 (76%), Gaps = 6/127 (4%) Query: 1 MRDRKGGFGNSPGCDQAACPVEFTLDXXXXXXXGGKWKGVLLYHMMEEKKRFSEFRRICP 60 MR+RK G S D CPVE TLD GGKWKG+LLYH+++ KKRF+EFR++ P Sbjct: 1 MRNRKLGIDYSSD-DFEGCPVETTLDII-----GGKWKGILLYHLIDGKKRFNEFRKLYP 54 Query: 61 GITQRMLTLQLRELEEDGVVHREVYQQVPPKVEYSLTEFGRTLIPIIRLMRDWGVEYQTK 120 ITQRMLTLQLRELE DGV+HREVY+QVPPKVEYSLTEFGRTL P+I M+DWG +Y+ + Sbjct: 55 KITQRMLTLQLRELERDGVIHREVYKQVPPKVEYSLTEFGRTLEPVILHMKDWGEKYKDR 114 Query: 121 QHSVESS 127 +E++ Sbjct: 115 IDKLEAA 121 >dbj|BAA19363.1| FUNCTION UNKNOWN, SIMILAR PRODUCT IN E. COLI, H. INFLUENZAE AND SYNECHOCYSTIS. [Bacillus subtilis] Length = 142 Score = 157 bits (397), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 78/127 (61%), Positives = 97/127 (76%), Gaps = 6/127 (4%) Query: 1 MRDRKGGFGNSPGCDQAACPVEFTLDXXXXXXXGGKWKGVLLYHMMEEKKRFSEFRRICP 60 +R+RK G S D CPVE TLD GGKWKG+LLYH+++ KKRF+EFR++ P Sbjct: 15 LRNRKLGIDYSSD-DFEGCPVETTLDII-----GGKWKGILLYHLIDGKKRFNEFRKLYP 68 Query: 61 GITQRMLTLQLRELEEDGVVHREVYQQVPPKVEYSLTEFGRTLIPIIRLMRDWGVEYQTK 120 ITQRMLTLQLRELE DGV+HREVY+QVPPKVEYSLTEFGRTL P+I M+DWG +Y+ + Sbjct: 69 KITQRMLTLQLRELERDGVIHREVYKQVPPKVEYSLTEFGRTLEPVILHMKDWGEKYKDR 128 Query: 121 QHSVESS 127 +E++ Sbjct: 129 IDKLEAA 135 >ref|NP_391934.1| similar to hypothetical proteins [Bacillus subtilis] sp|P37486|YYBR_BACSU Hypothetical protein yybR pir||S65979 conserved hypothetical protein yybR - Bacillus subtilis dbj|BAA05185.1| unknown [Bacillus subtilis] emb|CAB16091.1| yybR [Bacillus subtilis subsp. subtilis str. 168] Length = 125 Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 77/114 (67%), Positives = 88/114 (77%), Gaps = 10/114 (8%) Query: 1 MRDRKGGFGNSPGCDQAACPVEFTLDXXXXXXXGGKWKGVLLYHMMEEKKRFSEFRRICP 60 M ++K + N GC PVEFTLD GGKWKG+L YHM++ KKRF+EFRRICP Sbjct: 1 MSEKKNIYPNKEGC-----PVEFTLDVI-----GGKWKGILFYHMIDGKKRFNEFRRICP 50 Query: 61 GITQRMLTLQLRELEEDGVVHREVYQQVPPKVEYSLTEFGRTLIPIIRLMRDWG 114 ITQRMLTLQLRELE DG+VHREVY QVPPKVEYSLTEFGRTL PI+ M++WG Sbjct: 51 SITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEPIVLQMKEWG 104 >ref|NP_833059.1| Transcriptional regulator, MarR family [Bacillus cereus ATCC 14579] gb|AAP10260.1| Transcriptional regulator, MarR family [Bacillus cereus ATCC 14579] Length = 126 Score = 134 bits (337), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 62/111 (55%), Positives = 81/111 (72%), Gaps = 5/111 (4%) Query: 10 NSPGCDQAACPVEFTLDXXXXXXXGGKWKGVLLYHMMEEKKRFSEFRRICPGITQRMLTL 69 N P ++ +CPVE ++ GGKWKGV+LYH+++ KRF+E +R+ P ITQRMLTL Sbjct: 10 NYPFLNKYSCPVEAMVEVI-----GGKWKGVILYHLLDGTKRFNELKRLKPNITQRMLTL 64 Query: 70 QLRELEEDGVVHREVYQQVPPKVEYSLTEFGRTLIPIIRLMRDWGVEYQTK 120 QLRELE DG++HREVY++VPPKVEYSLTE G +L P+I LM +W K Sbjct: 65 QLRELEADGIIHREVYREVPPKVEYSLTELGESLRPVILLMMEWATHNMEK 115 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.139 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 193,549,407 Number of extensions: 7041730 Number of successful extensions: 12951 Number of sequences better than 1.0e-05: 276 Number of HSP's gapped: 12925 Number of HSP's successfully gapped: 276 Length of query: 132 Length of database: 757,237,578 Length adjustment: 95 Effective length of query: 37 Effective length of database: 499,303,173 Effective search space: 18474217401 Effective search space used: 18474217401 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 120 (50.8 bits)