BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0584.0024.p (311 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00099366.1| COG0438: Glycosyltransferase [Desulfitobacter... 142 7e-33 ref|ZP_00099364.1| COG0438: Glycosyltransferase [Desulfitobacter... 120 4e-26 gb|AAN63755.1| Eps9L [Streptococcus thermophilus] 78 3e-13 gb|AAN63708.1| Eps5M [Streptococcus thermophilus] 74 4e-12 gb|AAL23736.1| Eps3M [Streptococcus thermophilus] 64 5e-09 >ref|ZP_00099366.1| COG0438: Glycosyltransferase [Desulfitobacterium hafniense] Length = 332 Score = 142 bits (359), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 92/289 (31%), Positives = 143/289 (49%), Gaps = 15/289 (5%) Query: 2 LRESDFPVSDIIVSNFYTTVPVSEAASQQGKGMHIRLSLCYEPLFLPENEVSFPSYHITD 61 L + P D I+ NF+ TV + A KG +RLSL +EPL++ E E + +YHI Sbjct: 56 LTPATIPAGDFILPNFWPTVFPAWGAQ---KGRVVRLSLGFEPLWVKEKENALATYHIDA 112 Query: 62 KLLVLSQWQQELIALSHGITGSIVPVGISTGFRNQHIRH--MLQEPLNITAILRKEENGF 119 +L +SQW +++I G +I+P G+ + H + M I ILR +E+G+ Sbjct: 113 PILSISQWHRQIIRQETGRDSTIIPGGVDLSLFHPHPKKSLMANTGPTIAYILRSKEHGY 172 Query: 120 ASHREQGYLVKQLDIVRHNAPQVNINFICPPDEFYSSESLQRMKAEGKYRFFTPKNDEEL 179 + + + I + P + + P Y S Y+ D EL Sbjct: 173 TWKGSDDFW-EAIRITAQSFPHFTLQIVAPEGAAYPSPV--------PYQPIVATTDAEL 223 Query: 180 CYHYNGADIFVSASAFDAGSLPGLEAMRCGAALVSVYSGGNLQYARHEENCLLSYRYENR 239 Y ADIFVS S F+A ++P LEAM CG A+V+ +GGN YA++ ENCL+ + + Sbjct: 224 ALFYAQADIFVSTSYFEAFAMPPLEAMACGTAVVTTDNGGNRDYAKNGENCLVVPPSDIQ 283 Query: 240 LAHDVLRLIADPAL-RARLAEQGEADSLAWTWDNSVNSMEQAVVRFMQN 287 L + A R RLA+ G+ + AWTW +S + +EQ + + +N Sbjct: 284 QLSQSLLHLLTQAQERQRLAQAGQHTAQAWTWRHSADRLEQFLFQLSRN 332 >ref|ZP_00099364.1| COG0438: Glycosyltransferase [Desulfitobacterium hafniense] Length = 327 Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 95/288 (32%), Positives = 139/288 (48%), Gaps = 34/288 (11%) Query: 2 LRESDFPVSDIIVSNFYTTVPVSEAASQQGKGMHIRLSLCYEPLFLPENEVSFPSYHITD 61 L ++ P D I+ NFYTTV + A SQ+GK +RLSL YEPL++P+ E + SY I Sbjct: 57 LSPANIPYGDFILPNFYTTVGAAWA-SQKGK--VVRLSLGYEPLWVPDTESAKQSYLIDA 113 Query: 62 KLLVLSQWQQELIALSHGITGSIVPVGISTG-FRNQHIRHMLQEPLNITAILRKEENGFA 120 +L +SQW ++LI G +++ G+ FR R NI ILR G+ Sbjct: 114 PILSISQWHRQLILQETGRNSTVISCGVDHHLFRPCPKRSSQTGRKNIFYILRNPALGYI 173 Query: 121 SHREQGY-----LVKQLD----IVRHNAPQVNINFICPPDEFYSSESLQRMKAEGKYRFF 171 + + L+K LD + A Q+ +F C R Sbjct: 174 WKGGEDFFNALSLLKGLDFEVTVTLTEATQLTGSFPC--------------------RTV 213 Query: 172 TPKNDEELCYHYNGADIFVSASAFDAGSLPGLEAMRCGAALVSVYSGGNLQYARHEENCL 231 +D+E+ Y AD+FV S F+A LP LEAM CG A+++ GG+ YA + ENCL Sbjct: 214 YAASDQEMAALYGEADLFVYNSYFEAFGLPPLEAMACGTAVITTDCGGSRDYAHNGENCL 273 Query: 232 LSYRYE-NRLAHDVLRLIADPALRARLAEQGEADSLAWTWDNSVNSME 278 + + N+L + L+ R RLA G A + AWTW + + +E Sbjct: 274 VVPPSDINQLQQALHLLLTQDGERQRLASAGFAFAQAWTWQRTADQVE 321 >gb|AAN63755.1| Eps9L [Streptococcus thermophilus] Length = 358 Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/285 (24%), Positives = 123/285 (43%), Gaps = 28/285 (9%) Query: 6 DFPVSDIIVSNFYTTVPVSEA-ASQQGKGMHIRLSLCYEPLFLPENEVSFPSYHITDKLL 64 +FP +D I + TT + + S+ GK + +E LPE++V +Y Sbjct: 88 EFPEADFIFATAVTTAEIVKGLPSRCGKKCYFIQD--FETFILPEDKV-VETYQYDFLNF 144 Query: 65 VLSQWQQELIALSHGITGSIVPVGISTGFRNQHIRHMLQEPLN-----ITAILRKEENGF 119 +S W +++ G+ S P+ + ++ R + P+N +L E Sbjct: 145 TVSNWLSDIV----GVYTSNKPICLPNPIDTENFRVI--TPINERNTHTLGMLYHE---- 194 Query: 120 ASHREQGYLVKQLDIVRHNAPQVNINFICPPDEFYSSESLQRMKAEGKYRFFTPKNDEEL 179 H+ Y ++ +DIV+ V +N P+ + +++ N +L Sbjct: 195 GEHKGIPYALEAIDIVKKKYNDVVVNIFGVPN--------RPATLPDYFKYIQNANQIDL 246 Query: 180 CYHYNGADIFVSASAFDAGSLPGLEAMRCGAALVSVYSGGNLQYARHEENCLLS-YRYEN 238 YN IF+ A+ + L G E+M CG ALVS G +YA + N LLS R Sbjct: 247 LKLYNETSIFICATIDEGFGLTGAESMACGCALVSTAYDGVFEYAENGVNALLSPVRNSE 306 Query: 239 RLAHDVLRLIADPALRARLAEQGEADSLAWTWDNSVNSMEQAVVR 283 LA ++++LI + + R LA++ +WD ++ +E + R Sbjct: 307 ALAENIIKLIENESYRQSLAQKASEMIRERSWDKTIQKLEIVLAR 351 >gb|AAN63708.1| Eps5M [Streptococcus thermophilus] Length = 353 Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 69/287 (24%), Positives = 122/287 (42%), Gaps = 32/287 (11%) Query: 6 DFPVSDIIVSNFYTTVPVSEAASQQGKGMHIRLSLCYEPLFLPENEV------SFPSYHI 59 DFP +D + + +T + + G G +E E +V F ++ + Sbjct: 88 DFPKADFVFATAVSTAEIVKCLPA-GCGKKCYFIQDFETFIASEEKVVESYDYGFINFTV 146 Query: 60 TDKL--LVLSQWQQELIALSHGITGSIVPVGISTGFRNQHIRHMLQEPLNITAILRKEEN 117 + L LV S ++ I L + I + V RN P+ + + + E Sbjct: 147 STWLNNLVKSYTHKDTICLPNPIDTEVFKVVTPIENRN---------PMTLGMLYHEGE- 196 Query: 118 GFASHREQGYLVKQLDIVRHNAPQVNINFICPPDEFYSSESLQRMKAEGKYRFFTPKNDE 177 H+ Y +K ++ V+ P++ +N P+ R + + +F E Sbjct: 197 ----HKGVSYALKAIERVKEKYPEITVNIFGVPER-------PRFLPD-YFNYFQKVTQE 244 Query: 178 ELCYHYNGADIFVSASAFDAGSLPGLEAMRCGAALVSVYSGGNLQYARHEENCLLS-YRY 236 EL YN IFV A+ + L G E+M CG AL S G +YA N LLS R Sbjct: 245 ELLQLYNDTAIFVCATIDEGFGLTGAESMACGCALASTAYSGVFEYAVDGVNALLSPVRD 304 Query: 237 ENRLAHDVLRLIADPALRARLAEQGEADSLAWTWDNSVNSMEQAVVR 283 ++LA+++++LI D R LA++ + +W ++N +E+ + + Sbjct: 305 SSQLANNIIKLIEDNEHRQLLAKRASDMLIERSWKATINKLEEELSK 351 >gb|AAL23736.1| Eps3M [Streptococcus thermophilus] Length = 356 Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 1/103 (0%) Query: 177 EELCYHYNGADIFVSASAFDAGSLPGLEAMRCGAALVSVYSGGNLQYARHEENCLLS-YR 235 E+ YN IF+ A+ + L GLEAM CGA LVS G +YA + N LLS R Sbjct: 245 EDTVKIYNSVSIFLCATVSEGFGLTGLEAMSCGAVLVSSDYDGVREYAINGVNALLSPIR 304 Query: 236 YENRLAHDVLRLIADPALRARLAEQGEADSLAWTWDNSVNSME 278 N L +V + D LR RL++ G + TW+++++ +E Sbjct: 305 DSNSLVQNVALVFEDELLRNRLSKNGIQSARELTWESAMDKLE 347 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.135 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 469,450,724 Number of extensions: 19195989 Number of successful extensions: 45257 Number of sequences better than 1.0e-05: 9 Number of HSP's gapped: 45329 Number of HSP's successfully gapped: 9 Length of query: 311 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 186 Effective length of database: 417,850,203 Effective search space: 77720137758 Effective search space used: 77720137758 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)