BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0048.p (319 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242791.1| sugar transport system (permease) [Bacillus hal... 263 3e-69 ref|NP_822934.1| putative sugar transport system permease [Strep... 216 4e-55 ref|NP_627026.1| putative cellobiose transport permease [Strepto... 182 1e-44 ref|NP_826432.1| putative cellobiose transport permease [Strepto... 172 8e-42 gb|AAF37728.1| cellobiose transport permease BglA [Thermobifida ... 172 1e-41 >ref|NP_242791.1| sugar transport system (permease) [Bacillus halodurans] pir||E83890 sugar transport system (permease) BH1925 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05644.1| sugar transport system (permease) [Bacillus halodurans] Length = 305 Score = 263 bits (673), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 135/304 (44%), Positives = 195/304 (64%), Gaps = 9/304 (2%) Query: 10 HAESKRPFLTEQRRSRITAYTXXXXXXXXXXXXGLYPIFFTIYLSFFKWDALGPMKFXXX 69 H+ +R +LTE+RR+ ++AY GL+P+ F+ YLSFF+WD L PM + Sbjct: 3 HSAKER-WLTEERRTALSAYAFISPFFILFAVFGLFPMIFSFYLSFFRWDGLNPMSYVG- 60 Query: 70 XMKNYDLVTSDPTFWISFSNTLIMGLMGTVPQIIXXXXXXXXXHSGMTKFKKTFRILYFM 129 + N+ L+ +DPTF+ + NT I+G++GT+PQII +S + +F+ TFR L F+ Sbjct: 61 -LANFQLIFNDPTFFSAIKNTFIIGILGTLPQIIVGILLAFALNSALIRFQHTFRTLVFL 119 Query: 130 PNITSIVAVTLVFSTLFGNN--GMINWMLNGLGLDSVAFNSGWWGVKIAISTMVMWRWTG 187 P ITSIVAV ++F +F N G+ N++L+ +D V ++ +W VKIAI+TMV WRW G Sbjct: 120 PYITSIVAVAIIFGLVFNNQPFGLANYVLSLFNIDPVRWSQEYWPVKIAIATMVFWRWVG 179 Query: 188 YNAIIFLSGLQSIPTDLYEAARIDGANRRQQFTFITMPLLRPFIVFVTLLSTIGALQLFT 247 YN IIFL+G+QSIP +LYEAA+IDGA QQ IT+P+L+PFI+FV +TIG+LQLFT Sbjct: 180 YNTIIFLAGMQSIPKELYEAAKIDGATIGQQIRLITVPMLKPFILFVVFTATIGSLQLFT 239 Query: 248 EPYVFLGQSGTGSTRQEGITMVTYLYSEAFRNXXXXXXXXXXXXXXXXXIIFSLLNMLAS 307 EP +FLG+ R+EGITMV YL+ +AF I + +N+L + Sbjct: 240 EPLIFLGR----GLREEGITMVAYLWRDAFVLNAFGTASAAAIVLFFIIITLTAINLLIT 295 Query: 308 SRMG 311 +R+G Sbjct: 296 NRIG 299 >ref|NP_822934.1| putative sugar transport system permease [Streptomyces avermitilis MA-4680] dbj|BAC69469.1| putative sugar transport system permease [Streptomyces avermitilis MA-4680] Length = 320 Score = 216 bits (551), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 122/315 (38%), Positives = 179/315 (56%), Gaps = 14/315 (4%) Query: 5 VLASPHAESKRPFLTEQRRSRITAYTXXXXXXXXXXXXGLYPIFFTIYLSFFKWDALGPM 64 V A+P A S + L+ R Y GL P+ F++YLSF +WD LG M Sbjct: 14 VSATPTARSGKGVLSHWRL-----YAAISPFYLLFLAFGLIPVGFSLYLSFHRWDGLGSM 68 Query: 65 KFXXXXMKNYDLVTSDPTFWISFSNTLIMGLMGTVPQIIXXXXXXXXXHSGMTKFKKTFR 124 +F + Y + SD FW S NT+++ + T+P I+ +S + +FK +R Sbjct: 69 EFAG--LSQYRYLLSDSQFWTSIGNTIVIWALATIPMILLAMVTAVLLNSAV-RFKNVYR 125 Query: 125 ILYFMPNITSIVAVTLVFSTLFGNN-GMINWMLNGLGLDSVAFNSGWWGVKIAISTMVMW 183 +F+PN+TSIVAV ++F ++F N G++N +L +GLD VA+ + WG+K+AI+T++ W Sbjct: 126 FAFFLPNVTSIVAVAIIFGSVFSTNFGLMNAVLQAVGLDQVAWLNTPWGIKVAIATLMTW 185 Query: 184 RWTGYNAIIFLSGLQSIPTDLYEAARIDGANRRQQFTFITMPLLRPFIVFVTLLSTIGAL 243 +WTGYNAIIFL+GLQ+IP +LYEAAR+DGA Q F IT+PLLRP ++FV ++ST+ L Sbjct: 186 QWTGYNAIIFLAGLQTIPGELYEAARMDGAGPLQTFFRITLPLLRPVLLFVLVISTVTGL 245 Query: 244 QLFTEPYVFL-----GQSGTGSTRQEGITMVTYLYSEAFRNXXXXXXXXXXXXXXXXXII 298 Q F+EP V L S G G TMV Y + + F N ++ Sbjct: 246 QSFSEPQVLLQTTDNNSSFAGGPGHAGQTMVLYFFQQTFDNNDFGYGAAVAWGIFLVVVL 305 Query: 299 FSLLNMLASSRMGGD 313 FS++N R G + Sbjct: 306 FSIINWRLVQRRGEE 320 >ref|NP_627026.1| putative cellobiose transport permease [Streptomyces coelicolor A3(2)] emb|CAC10105.1| putative cellobiose transport permease [Streptomyces coelicolor A3(2)] Length = 337 Score = 182 bits (461), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 110/309 (35%), Positives = 170/309 (55%), Gaps = 6/309 (1%) Query: 7 ASPHAES-KRPFLTE--QRRSRITAYTXXXXXXXXXXXXGLYPIFFTIYLSFFKWDALGP 63 AS A+ KR L+ QR R + Y GL+P+ +T + S + P Sbjct: 26 ASAEADRRKRAKLSRRWQRDMRWSPYAFVSPFFLLFLAFGLFPLIYTGWASLHTVELTAP 85 Query: 64 MKFXXXXMKNYDLVTSDPTFWISFSNTLIMGLMGTVPQIIXXXXXXXXXHSGMTKFKKTF 123 + NY + D FW + NTL +G++ TVPQ++ + + + + Sbjct: 86 TDMQWTGLDNYTRIFDDEFFWNAAKNTLWIGVISTVPQLLMAMGLAHILNYKL-RASTFY 144 Query: 124 RILYFMPNITSIVAVTLVFSTLFGNN-GMINWMLNGLGLDSVAFNSGWWGVKIAISTMVM 182 R++ P TSI A +LVF LFG + GMINW+L+ +GLD + + +G W K A+ST+V+ Sbjct: 145 RVVMLAPYATSIAAASLVFVLLFGRDYGMINWVLDLVGLDKIDWQNGSWSSKFAVSTIVI 204 Query: 183 WRWTGYNAIIFLSGLQSIPTDLYEAARIDGANRRQQFTFITMPLLRPFIVFVTLLSTIGA 242 WRWTGYNA+I+L+ +Q+IP DLYE+A +DGA+R +QF +T+P LRP I+F ++STIGA Sbjct: 205 WRWTGYNALIYLAAMQAIPQDLYESAALDGASRWRQFIHVTLPSLRPTILFTVVVSTIGA 264 Query: 243 LQLFTEPYVFLGQSG-TGSTRQEGITMVTYLYSEAFRNXXXXXXXXXXXXXXXXXIIFSL 301 Q+F EP +F G +G ++ + T+ YLY + + N I+ + Sbjct: 265 SQVFGEPLLFDANKGASGGSQHQFQTLGLYLYEQGWVNQHLGRASAIAWAMFLILIVIGV 324 Query: 302 LNMLASSRM 310 LN + S R+ Sbjct: 325 LNAVISRRL 333 >ref|NP_826432.1| putative cellobiose transport permease [Streptomyces avermitilis MA-4680] dbj|BAC72967.1| putative cellobiose transport permease [Streptomyces avermitilis MA-4680] Length = 338 Score = 172 bits (437), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 91/264 (34%), Positives = 149/264 (56%), Gaps = 3/264 (1%) Query: 49 FTIYLSFFKWDALGPMKFXXXXMKNYDLVTSDPTFWISFSNTLIMGLMGTVPQIIXXXXX 108 +T + S + + P ++NY + D FW + NTL +G++ TVPQ++ Sbjct: 72 YTGWASLHQVELTAPTDMEWVGLRNYTRIFDDDFFWNAAKNTLTIGIIATVPQLLMAMGL 131 Query: 109 XXXXHSGMTKFKKTFRILYFMPNITSIVAVTLVFSTLFGNN-GMINWMLNGLGLDSVAFN 167 + + + +R+ P TSI A +LVF LFG + GMINW L+ +G+ +V + Sbjct: 132 AHILNYKL-RASTFYRVAMLAPYATSIAAASLVFVLLFGRDYGMINWALHQVGIGAVDWQ 190 Query: 168 SGWWGVKIAISTMVMWRWTGYNAIIFLSGLQSIPTDLYEAARIDGANRRQQFTFITMPLL 227 + W + A+S++++WRWTGYNA+I+L+ +Q+IP DLYE+A +DGA+R +QF +T+P L Sbjct: 191 NDKWPSQFAVSSIIIWRWTGYNALIYLAAMQAIPQDLYESAALDGASRWRQFLHVTLPAL 250 Query: 228 RPFIVFVTLLSTIGALQLFTEPYVFLGQSG-TGSTRQEGITMVTYLYSEAFRNXXXXXXX 286 RP I+F ++STIGA Q+F EP +F G +G + T+ YLY + + N Sbjct: 251 RPTILFTVVVSTIGASQVFGEPLLFDANKGASGGAEHQFQTLGLYLYEQGWVNQHLGRAS 310 Query: 287 XXXXXXXXXXIIFSLLNMLASSRM 310 I+ ++N + S R+ Sbjct: 311 AIAWTMFLILILVGIVNYVISRRL 334 >gb|AAF37728.1| cellobiose transport permease BglA [Thermobifida fusca] Length = 302 Score = 172 bits (435), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 104/302 (34%), Positives = 162/302 (53%), Gaps = 5/302 (1%) Query: 12 ESKRPFLTEQRRSRITAYTXXXXXXXXXXXXGLYPIFFTIYLSFFKWDALGPMKFXXXXM 71 +R + R+T Y GL+P+ +T+++S W LG + Sbjct: 4 RERRQIFWTRMDLRVTPYLFIAPFFILFAIFGLFPLLYTVWVSLHDWTLLGGNQ-GFNWF 62 Query: 72 KNYDLVTSDPTFWISFSNTLIMGLMGTVPQIIXXXXXXXXXHSGMTKFKKTFRILYFMPN 131 +Y + D FW S NT + ++ VPQ++ S + FR+ +P Sbjct: 63 AHYTRLVQDAKFWNSLYNTFGIFVVAVVPQLLLAMYLADTL-SRRIRAVNFFRMGLLLPY 121 Query: 132 ITSIVAVTLVFSTLFGNN-GMINWMLNGLGLDSVAFNSGWWGVKIAISTMVMWRWTGYNA 190 +TSI AV +VFS LFG G+IN++L G+D + + +G + +AI+ M+ WRWTGYNA Sbjct: 122 LTSIAAVAIVFSQLFGTQFGLINYVLGFFGIDPINWQAGRFSSWVAIAVMIDWRWTGYNA 181 Query: 191 IIFLSGLQSIPTDLYEAARIDGANRRQQFTFITMPLLRPFIVFVTLLSTIGALQLFTEPY 250 +I+L+ + +IP ++YEAA IDGA+R +QF IT+P+LRP I+F ++STIG +QLFTEP Sbjct: 182 LIYLAAMSAIPREIYEAAAIDGASRMRQFWQITIPMLRPTIIFTVIVSTIGQMQLFTEPV 241 Query: 251 VFLGQSGTGSTRQEGITMVTYLYSEAFRNXXXXXXXXXXXXXXXXXIIFSLLNMLASSRM 310 +F G G+ Q TM+ ++ EAFR ++ S LN L +S++ Sbjct: 242 IF-GDVAGGTQGQFQTTMML-IFEEAFRFNNYGYGSAIAWTLFMIIVVLSALNALLTSKI 299 Query: 311 GG 312 G Sbjct: 300 KG 301 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.326 0.139 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 387,569,100 Number of extensions: 13356081 Number of successful extensions: 40348 Number of sequences better than 1.0e-05: 1142 Number of HSP's gapped: 39661 Number of HSP's successfully gapped: 1142 Length of query: 319 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 194 Effective length of database: 417,850,203 Effective search space: 81062939382 Effective search space used: 81062939382 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 126 (53.1 bits)