BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0039.p (200 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_389801.1| similar to two-component response regulator [Yo... 280 1e-74 ref|NP_693772.1| two-component response regulator [Oceanobacillu... 272 4e-72 ref|NP_847752.1| DNA-binding response regulator [Bacillus anthra... 229 4e-59 ref|NP_981774.1| DNA-binding response regulator [Bacillus cereus... 228 6e-59 ref|NP_653814.1| REC, cheY-homologous receiver domain [Bacillus ... 227 1e-58 >ref|NP_389801.1| similar to two-component response regulator [YocF] [Bacillus subtilis] pir||D69901 two-component response regulator [YocF] homolog yocG - Bacillus subtilis gb|AAB84438.1| sensor regulator [Bacillus subtilis] emb|CAB13812.1| yocG [Bacillus subtilis subsp. subtilis str. 168] Length = 199 Score = 280 bits (717), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 138/200 (69%), Positives = 162/200 (81%), Gaps = 1/200 (0%) Query: 1 MIKIVIAEDQRMXXXXXXXXXXXXXXMKVVGRAANGEEAVKLVQQHQPDICIMDIEMPAM 60 MI I IAEDQ+M M+VVG+ G++AV V++ QPD+CIMDIEMP Sbjct: 1 MISIFIAEDQQMLLGALGSLLNLEDDMEVVGKGTTGQDAVDFVKKRQPDVCIMDIEMPGK 60 Query: 61 SGLEAAEALKDSGCKIMILTTFARAGYFERAVKAGVDAYLLKDSPSEELALSIRSVMSGK 120 +GLEAAE LKD+GCKI+ILTTFAR GYF+RA+KAGV YLLKDSPSEELA +IRSVM+GK Sbjct: 61 TGLEAAEELKDTGCKIIILTTFARPGYFQRAIKAGVKGYLLKDSPSEELANAIRSVMNGK 120 Query: 121 RLYAPELMDEAYSGEANPLTQREKEVLGLIADGKNTKEIASQLYITTGTVRNYISVILDK 180 R+YAPELM++ YS EANPLT REKEVL L+ADGKNTKEIA +L I +GTVRNYIS+IL+K Sbjct: 121 RIYAPELMEDLYS-EANPLTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEK 179 Query: 181 LDVGNRIEAITRFKEKGWFK 200 L+V NRIEAITR KEKGWFK Sbjct: 180 LEVKNRIEAITRSKEKGWFK 199 >ref|NP_693772.1| two-component response regulator [Oceanobacillus iheyensis HTE831] dbj|BAC14806.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 199 Score = 272 bits (695), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 129/200 (64%), Positives = 160/200 (80%), Gaps = 1/200 (0%) Query: 1 MIKIVIAEDQRMXXXXXXXXXXXXXXMKVVGRAANGEEAVKLVQQHQPDICIMDIEMPAM 60 MI+IVIAEDQ++ M+VVG+A NGEE + LV+Q +PD+CIMDIEMP Sbjct: 1 MIRIVIAEDQQLLLGALGTLLSMEEDMEVVGQAKNGEEVLNLVEQKKPDVCIMDIEMPVK 60 Query: 61 SGLEAAEALKDSGCKIMILTTFARAGYFERAVKAGVDAYLLKDSPSEELALSIRSVMSGK 120 +GL+AAE L+D CK+++LTTFAR GYFERA KA V+ YLLKDSPSE+LA SIR++M+G+ Sbjct: 61 TGLDAAEELRDDDCKVIVLTTFARTGYFERARKANVNGYLLKDSPSEDLANSIRAIMAGR 120 Query: 121 RLYAPELMDEAYSGEANPLTQREKEVLGLIADGKNTKEIASQLYITTGTVRNYISVILDK 180 ++YAPEL+D AY E NPLT RE++VL LIADGK TKEIA QLY+T GTVRNY+S I+DK Sbjct: 121 KVYAPELIDMAYE-EGNPLTTREEQVLKLIADGKTTKEIAGQLYLTNGTVRNYVSTIMDK 179 Query: 181 LDVGNRIEAITRFKEKGWFK 200 L+V NRIEAI+R KEKGWFK Sbjct: 180 LNVSNRIEAISRIKEKGWFK 199 >ref|NP_847752.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gb|AAP29238.1| DNA-binding response regulator [Bacillus anthracis str. Ames] Length = 200 Score = 229 bits (583), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 120/201 (59%), Positives = 145/201 (72%), Gaps = 3/201 (1%) Query: 1 MIKIVIAEDQRMXXXXXXXXXXXXXXMKVVGRAANGEEAVKLVQQHQPDICIMDIEMPAM 60 MI+I+IAEDQRM ++V+G+AANGEEA+KL++ +PD+ IMDIEMP Sbjct: 1 MIRIIIAEDQRMLRGALGALLDLEDDIEVIGQAANGEEALKLIESLKPDVSIMDIEMPIQ 60 Query: 61 SGLEAAEALKD--SGCKIMILTTFARAGYFERAVKAGVDAYLLKDSPSEELALSIRSVMS 118 SGL+ AE LK S CK+MILTTFAR GYFERA+KAGV YLLKDSPSE+LA SIR+VM Sbjct: 61 SGLDVAETLKKEKSACKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAASIRNVMK 120 Query: 119 GKRLYAPELMDEAYSGEANPLTQREKEVLGLIADGKNTKEIASQLYITTGTVRNYISVIL 178 GKR + +LM + E NPL+ REKEVL L +GK EIA LY++ GTVRNYIS +L Sbjct: 121 GKREISQDLMFGLWQ-EQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVL 179 Query: 179 DKLDVGNRIEAITRFKEKGWF 199 KLD NRIEAIT +EKGW Sbjct: 180 TKLDAKNRIEAITIAEEKGWI 200 >ref|NP_981774.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gb|AAS44382.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 200 Score = 228 bits (581), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 119/201 (59%), Positives = 145/201 (72%), Gaps = 3/201 (1%) Query: 1 MIKIVIAEDQRMXXXXXXXXXXXXXXMKVVGRAANGEEAVKLVQQHQPDICIMDIEMPAM 60 MI+I+IAEDQRM ++V+G+AANGEEA+KL++ +PD+ IMDIEMP Sbjct: 1 MIRIIIAEDQRMLRGALGALLDLEDDIEVIGQAANGEEALKLIESLKPDVSIMDIEMPIQ 60 Query: 61 SGLEAAEALKD--SGCKIMILTTFARAGYFERAVKAGVDAYLLKDSPSEELALSIRSVMS 118 SGL+ AE LK S CK+MILTTFAR GYFERA+KAGV YLLKDSPSE+LA SIR++M Sbjct: 61 SGLDVAETLKKEKSACKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLAASIRNIMK 120 Query: 119 GKRLYAPELMDEAYSGEANPLTQREKEVLGLIADGKNTKEIASQLYITTGTVRNYISVIL 178 GKR + +LM + E NPL+ REKEVL L +GK EIA LY++ GTVRNYIS +L Sbjct: 121 GKREISQDLMFGLWQ-EQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVL 179 Query: 179 DKLDVGNRIEAITRFKEKGWF 199 KLD NRIEAIT +EKGW Sbjct: 180 TKLDAKNRIEAITIAEEKGWI 200 >ref|NP_653814.1| REC, cheY-homologous receiver domain [Bacillus anthracis A2012] Length = 200 Score = 227 bits (578), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 119/201 (59%), Positives = 144/201 (71%), Gaps = 3/201 (1%) Query: 1 MIKIVIAEDQRMXXXXXXXXXXXXXXMKVVGRAANGEEAVKLVQQHQPDICIMDIEMPAM 60 MI+I+IAEDQRM ++V+G+AANGEEA+KL++ +PD+ IMDIEMP Sbjct: 1 MIRIIIAEDQRMLRGALGALLDLEDDIEVIGQAANGEEALKLIESLKPDVSIMDIEMPIQ 60 Query: 61 SGLEAAEALKD--SGCKIMILTTFARAGYFERAVKAGVDAYLLKDSPSEELALSIRSVMS 118 SGL+ AE LK S CK+MILTTFAR GYFERA+KAGV YLLKDSPSE+L SIR+VM Sbjct: 61 SGLDVAETLKKEKSACKVMILTTFARPGYFERAMKAGVHGYLLKDSPSEDLXASIRNVMK 120 Query: 119 GKRLYAPELMDEAYSGEANPLTQREKEVLGLIADGKNTKEIASQLYITTGTVRNYISVIL 178 GKR + +LM + E NPL+ REKEVL L +GK EIA LY++ GTVRNYIS +L Sbjct: 121 GKREISQDLMFGLWQ-EQNPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVL 179 Query: 179 DKLDVGNRIEAITRFKEKGWF 199 KLD NRIEAIT +EKGW Sbjct: 180 TKLDAKNRIEAITIAEEKGWI 200 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.133 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 242,969,229 Number of extensions: 8822692 Number of successful extensions: 44923 Number of sequences better than 1.0e-05: 1219 Number of HSP's gapped: 45472 Number of HSP's successfully gapped: 1220 Length of query: 200 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 81 Effective length of database: 434,140,797 Effective search space: 35165404557 Effective search space used: 35165404557 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)