BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0034.p (456 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00143937.1| hypothetical protein [Fusobacterium nucleatum... 246 7e-64 ref|NP_812817.1| conserved hypothetical protein [Bacteroides the... 71 6e-11 ref|ZP_00101755.1| hypothetical protein [Desulfitobacterium hafn... 68 4e-10 ref|ZP_00057358.1| hypothetical protein [Thermobifida fusca] 66 1e-09 ref|ZP_00048982.1| hypothetical protein [Magnetospirillum magnet... 60 1e-07 >ref|ZP_00143937.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gb|EAA24472.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 479 Score = 246 bits (628), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 160/461 (34%), Positives = 231/461 (50%), Gaps = 23/461 (4%) Query: 5 SFIRLHTSENGELLFGQCAGSGKTPYECSVDFISPDNPVFRCTCPSRQFPCKHTLGLLYA 64 +F++L S + G+C GSGK+ Y SVDFI +NPV RC+CPSRQFPCKH L LL+ Sbjct: 29 AFVKLAHSSDDTFYMGECKGSGKSNYIVSVDFIDEENPVIRCSCPSRQFPCKHGLALLFE 88 Query: 65 YVEGQAFTPAPVPEDISSXXXXXXXXXXXXXXXXXGGAESK-PKKVNKSALKKKINAQXX 123 +G+ F +PEDI + E K P KV+K+A KKIN Q Sbjct: 89 IADGKTFEECEIPEDILAKREKKEKAKAKKESAEGTEKEKKAPSKVSKAARIKKINKQIE 148 Query: 124 XXXXXXXXXXXXIRGGLSTIDSKTLKTVQEHVKQMGNYYLSGAQTQLRRFALLLG--KGE 181 ++ GLS + + +LK ++ VKQ+G+YYL G Q +R L + K + Sbjct: 149 GLDLIKKITSQLLKVGLSIMGTVSLKEYKDIVKQLGDYYLPGPQILFQRLMLEVQEYKED 208 Query: 182 NREESYTYAMEQLTRLHAFIKKARVYLTTRAEDPELALDHESTIDEWLGHAWQLSELKEY 241 + Y A+E L +L A KK R YL E L + ++T+ E LG W+L +L + Sbjct: 209 QDTKHYQQALECLKKLRAIEKKGREYLKAELEKENLEI-SDNTLYEDLGGVWKLEQLNDL 267 Query: 242 GLVKESVELLQLAFYSYDDPARQELVDLXXXYWLETASGAIHRTVNYRPYKAAKLMREED 301 GL KE+ L+QL+F D A + +D YW++ SG I T N RP A K ++++D Sbjct: 268 GLKKENARLIQLSFDVTYDEASKIFIDC--GYWIDIDSGEISYTANLRPLSAIKYIKQDD 325 Query: 302 SFFDLARIPLLYTYPGDMNVRVRYEEMTSRAVEAKDLERVAASANRSYAEALKKVKNQLK 361 S F L +P L YPG +N R+R+ E +++ A +A+K KN+LK Sbjct: 326 SNFSLLTVPTLTYYPGGLNKRIRWATANFDEREKSSFKKIKTYAT-DIEQAVKTAKNELK 384 Query: 362 NPLSDKTPVMLLHAASLGVT---GSGQYVLTDDAGVQLVLDDIPSLPQGTLEL----LPF 414 N L+D +LL + GS +Y+L D + L + G EL Sbjct: 385 NILTDNEVSLLLEFNKIMFIEEEGSKKYILVDKNQKMIELKN-----NGDRELAKVFYEL 439 Query: 415 LPASAMKNCCVLVMFEHLLDQGRLV-AQPLTIIQDGAITRL 454 LP ++N VMF L + R + A+P +II D I RL Sbjct: 440 LPNECLEN---QVMFVKLYQEDRTIYAEPHSIITDDKIIRL 477 >ref|NP_812817.1| conserved hypothetical protein [Bacteroides thetaiotaomicron VPI-5482] gb|AAO79011.1| conserved hypothetical protein [Bacteroides thetaiotaomicron VPI-5482] Length = 442 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 4/66 (6%) Query: 18 LFGQCAGSGKTPYECSVDFISPDNPVFRCTCPSRQFPCKHTLGLLYAYV-EGQAFTPAPV 76 ++G C GSGKTPY+ VD N F+C+CPSR+FPCKH LGLL+ Y F A Sbjct: 42 IWGHCQGSGKTPYQTVVD---TKNIAFKCSCPSRKFPCKHGLGLLFMYASHADLFKEAEE 98 Query: 77 PEDISS 82 P+ +++ Sbjct: 99 PDWVTA 104 >ref|ZP_00101755.1| hypothetical protein [Desulfitobacterium hafniense] Length = 299 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 30/64 (46%), Positives = 38/64 (59%), Gaps = 4/64 (6%) Query: 14 NGELLFGQCAGSGKTPYECSVDFISPDNPVFRCTCPSRQFPCKHTLGLLYAYVEGQAFTP 73 + E L+G+C GSG PY+ VD + V RC+CPSR+FPCKH L LL + G Sbjct: 26 DAEALWGECKGSGAKPYQAQVDLAAL---VTRCSCPSRKFPCKHALALLLMHARG-GIVA 81 Query: 74 APVP 77 AP P Sbjct: 82 APRP 85 >ref|ZP_00057358.1| hypothetical protein [Thermobifida fusca] Length = 444 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 34/54 (62%) Query: 18 LFGQCAGSGKTPYECSVDFISPDNPVFRCTCPSRQFPCKHTLGLLYAYVEGQAF 71 ++G+C GSG Y+ +V I P P +RC+CPSR+ PCKH L LL + E A Sbjct: 53 VWGECKGSGAKHYQVAVHLIGPGTPAYRCSCPSRKIPCKHVLALLVLWTEDVAV 106 >ref|ZP_00048982.1| hypothetical protein [Magnetospirillum magnetotacticum] Length = 301 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 9 LHTSENGELLFGQCAGSGKTPYECSVDFISPDNPVFRCTCPSRQFPCKHTLGLL 62 L G +++G+ GSG +PY D P +CTCPSR+FPCKH LGL+ Sbjct: 29 LGLGRAGTVIWGEIKGSGASPYRTVADLA---GPASKCTCPSRKFPCKHALGLM 79 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.134 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 609,304,569 Number of extensions: 23440589 Number of successful extensions: 54741 Number of sequences better than 1.0e-05: 6 Number of HSP's gapped: 54734 Number of HSP's successfully gapped: 6 Length of query: 456 Length of database: 757,237,578 Length adjustment: 129 Effective length of query: 327 Effective length of database: 406,989,807 Effective search space: 133085666889 Effective search space used: 133085666889 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)