BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0580.0033.p
         (617 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00143936.1| hypothetical protein [Fusobacterium nucleatum...    72   3e-11

>ref|ZP_00143936.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gb|EAA24471.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 636

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 96/440 (21%), Positives = 175/440 (39%), Gaps = 52/440 (11%)

Query: 1   MSTALLQELHQEVRRLYIAGSELAAGDFRLKRLLPQFQQLGERAAVFKRLGEGITSLVEP 60
           M+   L EL   +  + + G  LA  DFRL+R + Q ++    A VFK++ +    L+  
Sbjct: 1   MNFEPLYELKNRLENVAVVGINLAKDDFRLQRAVEQIKEYSTVAKVFKQIYDMGQKLLSD 60

Query: 61  GAGDGAPAAVRXXXXXXXXXXXXXXXGVSTPDEAPGELRSRNFTLDTKLPYRKLAAVRQA 120
                                         P E     +S++F    +L Y +L+ +  A
Sbjct: 61  DEDKCDIFLDLLALLDAVLCTQATTYSGEKPQEIKTIAKSKDFY--KELHYSELSPLIYA 118

Query: 121 LTTTGSGRYEVVIEAFK--EGVFQDLRLLPLAIAALNDPYSEIAEFAMNNILPAYGPAIT 178
            T TG GRY+V+    K    +  D R+    I  L+D Y+ I +  +   L   G  + 
Sbjct: 119 FTETGGGRYQVIENTIKITSEIMNDFRVKTYMIKGLSDSYTAIGDLMIEE-LRKLGKEVI 177

Query: 179 GYLIESLNLTGGKSEVRKLKVIAKAGGTEALEKIFKAAEDGSDDIRAAAIECLGGHDAYL 238
             L +  +  G +  + +L +I+  G     +      E+GS +I+  AI  L      +
Sbjct: 178 PLLKDGFDPQGKREMLARLDIISHIGKENENDFYKYCIENGSKEIKEFAIGALKYSQDNI 237

Query: 239 QDLLEWSKDKKKVIREAAYKALATGGSSQGEDRLYEAFAGKK-----------DRELAAD 287
             +L+ +K +K  ++   ++ L+    S+ E + ++ F  KK           D++ A D
Sbjct: 238 DYILDLTKTEKGKLKNKVFEVLSYMNDSRAE-KEWDKFFKKKPLENIEYLRWTDQKWATD 296

Query: 288 ALAHCSSAPLVERLSALYMQELRELPEKNEDKKKAEQ---LWNNIRPFTTVLYGQQNPQL 344
            L +            +Y++EL     KN   K AE+   + N +    +V+  ++  ++
Sbjct: 297 YLNN---------FIGVYIEEL-----KNRSLKTAEERRIVENEVTRICSVILNKRTDKI 342

Query: 345 ----DELYSYVIADHGRFASLGLVNVIDEAARYKVRAATESAYEELRKLEQ--LESRFFP 398
                +LY Y   +  +  S  +V  ++       +  T+   E  RK E   LE  F  
Sbjct: 343 LSLFKDLYPYNKYEIKKILSFYIVTDLN-------KELTDLIKELARKYEGEFLEQEFLI 395

Query: 399 YVFRAAQQLMSPEELYKQFG 418
            + +       PE +YK F 
Sbjct: 396 SLIKD-----KPETVYKNFS 410


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.318    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 885,242,991
Number of extensions: 36796970
Number of successful extensions: 94890
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 94899
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 757,237,578
Length adjustment: 132
Effective length of query: 485
Effective length of database: 398,844,510
Effective search space: 193439587350
Effective search space used: 193439587350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)