BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0032.p (349 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00143935.1| MOXR-LIKE ATPASE [Fusobacterium nucleatum sub... 488 e-137 ref|NP_812819.1| conserved hypothetical protein [Bacteroides the... 379 e-104 ref|ZP_00057356.1| COG0714: MoxR-like ATPases [Thermobifida fusca] 374 e-102 ref|NP_824634.1| hypothetical protein [Streptomyces avermitilis ... 367 e-100 ref|NP_628960.1| conserved hypothetical protein [Streptomyces co... 364 1e-99 >ref|ZP_00143935.1| MOXR-LIKE ATPASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gb|EAA24470.1| MOXR-LIKE ATPASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 366 Score = 488 bits (1256), Expect = e-137, Method: Compositional matrix adjust. Identities = 234/349 (67%), Positives = 286/349 (81%) Query: 1 LYREELEALRKEDKGNIPAGWQMSPRAVLTFIAGGKAGKKVITPKYIGNTRLIEMAVATL 60 L++EE++AL K +K IP GW+MSP++VLT+I GGK GKK I PKYIGN RL+E+A++TL Sbjct: 15 LFQEEIDALIKAEKNPIPTGWKMSPKSVLTYICGGKVGKKNIIPKYIGNKRLVEIAISTL 74 Query: 61 VTDRALLLIGEPGTAKSWLSENLAAAIYGNSGLVVQGTAGTSEEHVRYSWNYAMLLANGP 120 VTDRALLLIGEPGTAKSWLSE+L AAI GNS V+QGTAGT+EE +RYSWNYAML+A GP Sbjct: 75 VTDRALLLIGEPGTAKSWLSEHLTAAINGNSTRVIQGTAGTTEEQIRYSWNYAMLIAEGP 134 Query: 121 TPEALVKSPIMRAMEDGGIARFEEISRCASEVQDALISILSEKTISVPELGKEAGARKGF 180 T EAL+ SPI +AMEDG IAR EEISRCASEVQDALIS+LSEK +SVPEL E A+KGF Sbjct: 135 TKEALIPSPIYKAMEDGAIARVEEISRCASEVQDALISLLSEKRLSVPELNIEIPAKKGF 194 Query: 181 SIIATANTRDRGVNEMSAALKRRFNIIVLPAPADIETELSIVKKRVAEIASSYNLGAAVP 240 S+IATANTRD+GVNEMSAALKRRFNI+VLP+P+ +E E+ IV+ RV ++A + +L A +P Sbjct: 195 SVIATANTRDKGVNEMSAALKRRFNIVVLPSPSSLEAEIDIVRTRVEQLAGNLDLNAKLP 254 Query: 241 ADEALLKVVTIFRELRSGMTLDKKEKVKTPAGVISTAEAISLLTNSMALAASFGDGELTD 300 +E + KV T+FRELR G+TLD K+K+K A V+STAEAISLL NSMALA SFGDGE++D Sbjct: 255 EEEVIEKVCTVFRELRQGVTLDGKQKIKPTANVLSTAEAISLLANSMALAGSFGDGEISD 314 Query: 301 RDLAAGLQGAXXXXXXXXXXXXXEYLDNVMKKKGAEWRGLYQACKEMNE 349 DLAAGLQGA EYL+N+MKK+G+EW GLY+ CK +N+ Sbjct: 315 YDLAAGLQGAIVKEDSKDGQIWEEYLENIMKKRGSEWLGLYKECKALNK 363 >ref|NP_812819.1| conserved hypothetical protein [Bacteroides thetaiotaomicron VPI-5482] gb|AAO79013.1| conserved hypothetical protein [Bacteroides thetaiotaomicron VPI-5482] Length = 359 Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/347 (53%), Positives = 251/347 (72%), Gaps = 2/347 (0%) Query: 2 YREELEALRKEDKGNIPAGWQMSPRAVLTFIAGGKAGKKV-ITPKYIGNTRLIEMAVATL 60 + EEL L++ + +P W+MSP++V+T++ GGK ++PKYIGN RL+E+AVATL Sbjct: 13 FAEELHELKQNETNPVPENWEMSPQSVVTYLMGGKLKNGFEVSPKYIGNRRLMEIAVATL 72 Query: 61 VTDRALLLIGEPGTAKSWLSENLAAAIYGNSGLVVQGTAGTSEEHVRYSWNYAMLLANGP 120 VTDRALLL G PGTAKSW+SE++AAAI G+S L+VQGTAGT EE +RY WNYA LLA GP Sbjct: 73 VTDRALLLYGLPGTAKSWVSEHIAAAISGDSTLIVQGTAGTGEEAIRYGWNYARLLAEGP 132 Query: 121 TPEALVKSPIMRAMEDGGIARFEEISRCASEVQDALISILSEKTISVPELGKEAGARKGF 180 + ALV++P+M+AM++G I R EE++R S+VQD LI+ILSEKT+ +PEL E A +GF Sbjct: 133 SVGALVQTPVMKAMQEGKIGRIEELTRIGSDVQDTLITILSEKTLPIPELNTEVQAIRGF 192 Query: 181 SIIATANTRDRGVNEMSAALKRRFNIIVLPAPADIETELSIVKKRVAEIASSYNLGAAVP 240 +IIATAN RD+GVN++S+ALKRRFN ++LP P I+ E+ IV++RV L A P Sbjct: 193 NIIATANNRDKGVNDLSSALKRRFNTVILPLPDSIDEEIDIVRRRVESFEKVMQLPAEKP 252 Query: 241 ADEALLKVVTIFRELRSGMTLDKKEKVKTPAGVISTAEAISLLTNSMALAASFGDGELTD 300 A E + +VVTIFRELR G T D K K+KTP+G +STAEAIS++ N +A+A FGDGE+ Sbjct: 253 ALEEIRRVVTIFRELRQGATADGKTKLKTPSGTLSTAEAISVVNNGLAMAGYFGDGEIHA 312 Query: 301 RDLAAGLQGAXXXXXXXXXXXXXEYLDNVMKKKGAEWRGLYQACKEM 347 DL +G+ GA EY++ V+K + W+ +Y+A ++M Sbjct: 313 EDLVSGILGAVVKDPVQDKVVWQEYMETVVKNRDG-WKDIYRASRDM 358 >ref|ZP_00057356.1| COG0714: MoxR-like ATPases [Thermobifida fusca] Length = 364 Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust. Identities = 193/347 (55%), Positives = 249/347 (71%), Gaps = 4/347 (1%) Query: 2 YREELEALRKEDKGNIPAGWQMSPRAVLTFIAGGKAGKKV-ITPKYIGNTRLIEMAVATL 60 Y +EL AL D + P GW++SP AV +I G ITPKY+G+ RL+E+AVATL Sbjct: 17 YADELAALAAIDDRHRPPGWKLSPWAVTQYILGTTLDDGTEITPKYVGSRRLVEVAVATL 76 Query: 61 VTDRALLLIGEPGTAKSWLSENLAAAIYGNSGLVVQGTAGTSEEHVRYSWNYAMLLANGP 120 TDRALLLIG PGTAK+WLSE+LAAAI G+S L+VQGTAGT EE +RY WNYA L+A GP Sbjct: 77 ATDRALLLIGVPGTAKTWLSEHLAAAISGDSTLLVQGTAGTVEEAIRYGWNYARLIAEGP 136 Query: 121 TPEALVKSPIMRAMEDGGIARFEEISRCASEVQDALISILSEKTISVPELGKEAGARKGF 180 + +ALV SP+M AM +G +AR EE++R S+VQDALI+ILSEKT+ VPELG E A++GF Sbjct: 137 SEQALVPSPVMTAMAEGRLARVEELTRIPSDVQDALITILSEKTLPVPELGIEVQAKRGF 196 Query: 181 SIIATANTRDRGVNEMSAALKRRFNIIVLPAPADIETELSIVKKRVAEIASSYNLGAAVP 240 +IIATAN RDRGVNE+S+AL+RRFN +VLP P + E+ IV +RVA++ + +L VP Sbjct: 197 NIIATANDRDRGVNELSSALRRRFNTLVLPVPQTADDEVDIVTRRVAQLGRNLDL-PEVP 255 Query: 241 AD-EALLKVVTIFRELRSGMTLDKKEKVKTPAGVISTAEAISLLTNSMALAASFGDGELT 299 A + +VVT+FRELR+G+T D KVKTP+G +STAEAIS++TN MALAA FGDG L Sbjct: 256 ASLTEIRRVVTVFRELRNGVTEDGHTKVKTPSGTLSTAEAISIITNGMALAAHFGDGVLR 315 Query: 300 DRDLAAGLQGAXXXXXXXXXXXXXEYLDNVMKKKGAEWRGLYQACKE 346 D+ G+ GA EYL+ V++ + +W Y AC+E Sbjct: 316 PADVVPGILGAVIQDPATDGVVWHEYLETVIRDRD-DWHDFYTACRE 361 >ref|NP_824634.1| hypothetical protein [Streptomyces avermitilis MA-4680] dbj|BAC71169.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 402 Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust. Identities = 181/338 (53%), Positives = 246/338 (72%), Gaps = 2/338 (0%) Query: 12 EDKGNIPAGWQMSPRAVLTFIAGGK-AGKKVITPKYIGNTRLIEMAVATLVTDRALLLIG 70 +D P W++SP AV T++ GG VITPKY+G R++E+AV TL TDRALLL+G Sbjct: 65 QDDRPRPVRWRLSPWAVATYLLGGTLPDGTVITPKYVGPRRIVEVAVTTLATDRALLLLG 124 Query: 71 EPGTAKSWLSENLAAAIYGNSGLVVQGTAGTSEEHVRYSWNYAMLLANGPTPEALVKSPI 130 PGTAK+W+SE+LAAA+ G+S L+VQGTAGT EE +RY WNYA LLA+GP+ +ALV SP+ Sbjct: 125 VPGTAKTWVSEHLAAAVSGDSTLLVQGTAGTPEEAIRYGWNYAQLLAHGPSRDALVPSPV 184 Query: 131 MRAMEDGGIARFEEISRCASEVQDALISILSEKTISVPELGKEAGARKGFSIIATANTRD 190 MRAM DG AR EE++R ++VQD LI+ILSEKT+ +PELG+E A +GF++IATAN RD Sbjct: 185 MRAMADGMTARVEELTRVPADVQDTLITILSEKTLPIPELGQEVQAVRGFNLIATANDRD 244 Query: 191 RGVNEMSAALKRRFNIIVLPAPADIETELSIVKKRVAEIASSYNLGAAVPADEALLKVVT 250 RGVNE+S+AL+RRFN +VLP P + E+ IV +RV +I S +L A + + +VVT Sbjct: 245 RGVNELSSALRRRFNTVVLPLPESADAEVDIVSRRVDQIGRSLDLPAVPDGVDEIRRVVT 304 Query: 251 IFRELRSGMTLDKKEKVKTPAGVISTAEAISLLTNSMALAASFGDGELTDRDLAAGLQGA 310 +FRELR G+T D + K+K+P+G +STAEAIS++TN +ALAA FGDG L D+AAG+ GA Sbjct: 305 VFRELRDGVTTDGRTKLKSPSGTLSTAEAISVVTNGLALAAHFGDGVLRASDVAAGILGA 364 Query: 311 XXXXXXXXXXXXXEYLDNVMKKKGAEWRGLYQACKEMN 348 EYL+ V++++ W Y+AC+E++ Sbjct: 365 VVRDPAADRVIWQEYLEAVVRERDG-WMDFYRACREVS 401 >ref|NP_628960.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] emb|CAB92666.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] Length = 373 Score = 364 bits (935), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 182/348 (52%), Positives = 250/348 (71%), Gaps = 2/348 (0%) Query: 2 YREELEALRKEDKGNIPAGWQMSPRAVLTFIAGGK-AGKKVITPKYIGNTRLIEMAVATL 60 + EL +L +D PA W++SP AV T++ GG VITPKY+G R++E+AV TL Sbjct: 26 FAAELASLAGQDDRPRPARWRLSPWAVATYLLGGTLPDGTVITPKYVGPRRVVEVAVTTL 85 Query: 61 VTDRALLLIGEPGTAKSWLSENLAAAIYGNSGLVVQGTAGTSEEHVRYSWNYAMLLANGP 120 TDRALLL+G PGTAK+W+SE+LAAA+ G+S L+VQGTAGT EE +RY WNYA LLA+GP Sbjct: 86 ATDRALLLLGVPGTAKTWVSEHLAAAVSGDSTLLVQGTAGTPEEAIRYGWNYARLLAHGP 145 Query: 121 TPEALVKSPIMRAMEDGGIARFEEISRCASEVQDALISILSEKTISVPELGKEAGARKGF 180 +ALV SP+MRAM +G R EE++R ++VQD+LI++LSEKT+ +PELG+E A +GF Sbjct: 146 GRDALVPSPVMRAMTEGATVRVEELTRIPADVQDSLITLLSEKTLPIPELGEEVQAVRGF 205 Query: 181 SIIATANTRDRGVNEMSAALKRRFNIIVLPAPADIETELSIVKKRVAEIASSYNLGAAVP 240 ++IATAN RDRGVN++S+AL+RRFN +VLP P E E+ IV +RV +I S +L +A Sbjct: 206 NLIATANDRDRGVNDLSSALRRRFNTVVLPLPESAEAEVDIVTRRVDQIGRSLDLPSAPD 265 Query: 241 ADEALLKVVTIFRELRSGMTLDKKEKVKTPAGVISTAEAISLLTNSMALAASFGDGELTD 300 + + +VVT+FRELR G+T D + KVK+P+G +STAEAIS++T +AL A FGDG L Sbjct: 266 GTDEIRRVVTVFRELRDGLTSDGRTKVKSPSGPLSTAEAISVVTGGLALCAHFGDGVLRA 325 Query: 301 RDLAAGLQGAXXXXXXXXXXXXXEYLDNVMKKKGAEWRGLYQACKEMN 348 DLAAG+ GA EYL+ V++++ W+ Y+AC+E+ Sbjct: 326 GDLAAGVLGAVVRDPGTDRVVWQEYLETVVREREG-WQDFYRACREVT 372 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.314 0.131 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 458,544,306 Number of extensions: 17221445 Number of successful extensions: 39450 Number of sequences better than 1.0e-05: 80 Number of HSP's gapped: 39492 Number of HSP's successfully gapped: 80 Length of query: 349 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 223 Effective length of database: 415,135,104 Effective search space: 92575128192 Effective search space used: 92575128192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 126 (53.1 bits)