BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0029.p (281 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00143933.1| hypothetical protein [Fusobacterium nucleatum... 308 1e-82 ref|NP_107617.1| hypothetical protein mlr7258 [Mesorhizobium lot... 241 2e-62 ref|ZP_00057354.1| hypothetical protein [Thermobifida fusca] 240 3e-62 ref|NP_824632.1| hypothetical protein [Streptomyces avermitilis ... 232 6e-60 ref|NP_628962.1| hypothetical protein SCD63A.16 [Streptomyces co... 231 2e-59 >ref|ZP_00143933.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gb|EAA24468.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 396 Score = 308 bits (788), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 141/280 (50%), Positives = 203/280 (72%), Gaps = 3/280 (1%) Query: 1 VKPDIQLVGTLLSLKGKIPEKTKDTARMXXXXXXXXXXXXXETDIRRAVTGALNKRQHSP 60 V+PDI L T++ LK +IP+K+K++ R E+DI+RAV ALNKRQHSP Sbjct: 114 VEPDINLASTIMLLKEQIPQKSKESVRAFIKKIVEEINKLLESDIKRAVRAALNKRQHSP 173 Query: 61 LPSLSGLDWKLTIQRNLKHYNQERRLIIPERFYYFDRARR--SKEWTVIVDIDQSGSMAS 118 +PS S LD+K TIQR +K+YN+E + IIPE +Y+F+RA + ++T+I+DIDQSGSM Sbjct: 174 IPSASSLDFKTTIQRGIKNYNKELKKIIPEHYYFFERASTNPTSKFTIILDIDQSGSMGE 233 Query: 119 SIIWASVIGSIFASIPALNTRVVVFDTEVVDLTEQCANDPVDMLFGIQLGGGTDIHKSVK 178 S+I++SV+ I AS+ +L TR+V FDTE+VDLTE+ ++DPVD+L+G QLGGGTDI+KS+K Sbjct: 234 SVIYSSVMACILASMASLKTRIVAFDTEIVDLTEK-SDDPVDLLYGFQLGGGTDINKSIK 292 Query: 179 YCEQFIEEPKKTLFIIVSDLYENGNQAGLVRRMRGLRESGVRTMTLLALSDEGKPSYDER 238 YC ++IE PKKT+F ++SDL E GN+ G++R + ++E+G+ + LLA+S +G+P YD + Sbjct: 293 YCMKYIENPKKTIFFLISDLMEGGNRGGMLRNLEDMKEAGITVVCLLAISGDGQPYYDAQ 352 Query: 239 LAGQLTRDGTPCFACTPALLPALVEGALKGQDLGELAKRL 278 +AG++ G PCFAC P LP L+E LK DL + Sbjct: 353 MAGKIAAMGIPCFACNPEKLPLLLERVLKNLDLSSFQEEF 392 >ref|NP_107617.1| hypothetical protein mlr7258 [Mesorhizobium loti MAFF303099] dbj|BAB53403.1| hypothetical protein [Mesorhizobium loti] Length = 415 Score = 241 bits (614), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 118/277 (42%), Positives = 174/277 (62%), Gaps = 3/277 (1%) Query: 1 VKPDIQLVGTLLSLKGKIPEKTKDTARMXXXXXXXXXXXXXETDIRRAVTGALNKRQHSP 60 ++ D+ LV L+SL+ +P KTKD AR E A+ GAL++ Q + Sbjct: 121 IEADVNLVADLISLRSVMPAKTKDIARTIIADIVAKLMQRLEQKTAEAIRGALDRSQRTN 180 Query: 61 LPSLSGLDWKLTIQRNLKHYNQERRLIIPERFYYFDRARRS--KEWTVIVDIDQSGSMAS 118 P +DW TI NL+HY E + I+PER F R +R V++ +DQSGSMAS Sbjct: 181 RPRQRDIDWPRTISANLRHYQAEHKTIVPERLVGFMRKQRRLVDLDEVVLCVDQSGSMAS 240 Query: 119 SIIWASVIGSIFASIPALNTRVVVFDTEVVDLTEQCANDPVDMLFGIQLGGGTDIHKSVK 178 S+I+AS+ ++ AS+P + T++V FDT +VDLTE+ +DPV++LFG+QLGGGTDI+++V Sbjct: 241 SVIYASIFAAVMASLPVVRTKLVCFDTAIVDLTEEL-SDPVEVLFGVQLGGGTDINQAVA 299 Query: 179 YCEQFIEEPKKTLFIIVSDLYENGNQAGLVRRMRGLRESGVRTMTLLALSDEGKPSYDER 238 YC IE P K+ ++++DLYE GN L++R+ L SGV + LLAL+D+G+P YD + Sbjct: 300 YCADRIERPTKSHMVLITDLYEGGNGQELLQRLASLVRSGVNVVVLLALTDQGRPGYDPK 359 Query: 239 LAGQLTRDGTPCFACTPALLPALVEGALKGQDLGELA 275 +AG + G P F CTP L P ++ AL+ +D+ A Sbjct: 360 MAGSVAALGIPVFTCTPDLFPDMMAAALRREDVSAWA 396 >ref|ZP_00057354.1| hypothetical protein [Thermobifida fusca] Length = 569 Score = 240 bits (612), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 121/272 (44%), Positives = 173/272 (63%), Gaps = 2/272 (0%) Query: 1 VKPDIQLVGTLLSLKGKIPEKTKDTARMXXXXXXXXXXXXXETDIRRAVTGALNKRQHSP 60 V+PD+ LVGTLL+LK +PE ++TAR R V GAL++ + Sbjct: 287 VEPDVHLVGTLLALKDVMPESARETARTVVRRVVNDLERKLAHHTRSTVQGALDRSARTT 346 Query: 61 LPS-LSGLDWKLTIQRNLKHYNQERRLIIPERFYYFDRARRSKEWTVIVDIDQSGSMASS 119 P +S +DW TI+RNL+HY E R I+P+ + R R + VI+ +DQSGSMASS Sbjct: 347 RPRRVSDIDWDRTIRRNLQHYLPEHRTIVPQTLVGYARRSRGVQRDVILAVDQSGSMASS 406 Query: 120 IIWASVIGSIFASIPALNTRVVVFDTEVVDLTEQCANDPVDMLFGIQLGGGTDIHKSVKY 179 +++ASV ++ AS+ L T +VVFDT VVDLT+Q +DPVD+LFG QLGGGTDI++++ Y Sbjct: 407 VVYASVFSAVLASLRTLRTSLVVFDTAVVDLTDQL-SDPVDVLFGTQLGGGTDINRAIAY 465 Query: 180 CEQFIEEPKKTLFIIVSDLYENGNQAGLVRRMRGLRESGVRTMTLLALSDEGKPSYDERL 239 C+ I P ++F+++SDLYE G + ++RR+ + +GV+ + LLALSD+G P+Y Sbjct: 466 CQGLITRPANSIFVLISDLYEGGIREEMLRRVAEMTAAGVQVIVLLALSDDGAPAYHHDN 525 Query: 240 AGQLTRDGTPCFACTPALLPALVEGALKGQDL 271 A L G P FACTP P L+ A++GQ L Sbjct: 526 AAALAALGVPAFACTPDKFPDLMAAAIQGQSL 557 >ref|NP_824632.1| hypothetical protein [Streptomyces avermitilis MA-4680] dbj|BAC71167.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 349 Score = 232 bits (592), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 125/271 (46%), Positives = 177/271 (65%), Gaps = 1/271 (0%) Query: 1 VKPDIQLVGTLLSLKGKIPEKTKDTARMXXXXXXXXXXXXXETDIRRAVTGALNKRQHSP 60 V+ D+ LVGTLLSL +P+ TK+TAR T R +TGAL++ Sbjct: 74 VEADVHLVGTLLSLNKAMPDTTKETARAVVRKVVEDLEKRLATRTRATLTGALDRSARIT 133 Query: 61 LPSLSGLDWKLTIQRNLKHYNQERRLIIPERFYYFDRARRSKEWTVIVDIDQSGSMASSI 120 P +DW TI NLKHY E R I+PER + RA +S + V++ IDQSGSMA+S+ Sbjct: 134 RPRHHDIDWNRTIAANLKHYLPEYRTIVPERLIGYGRASQSVKKEVVLCIDQSGSMAASV 193 Query: 121 IWASVIGSIFASIPALNTRVVVFDTEVVDLTEQCANDPVDMLFGIQLGGGTDIHKSVKYC 180 ++ASV G++ AS+ ++ TR+VVFDT VVDLT+Q +DPVD+LFG QLGGGTDI++++ YC Sbjct: 194 VYASVFGAVLASMRSIATRLVVFDTAVVDLTDQL-DDPVDVLFGTQLGGGTDINRALAYC 252 Query: 181 EQFIEEPKKTLFIIVSDLYENGNQAGLVRRMRGLRESGVRTMTLLALSDEGKPSYDERLA 240 + I P T+ +++SDLYE G + +++R+ ++ SGV+ +TLLALSDEG P+YD A Sbjct: 253 QSQITRPADTVVVLISDLYEGGIRDEMLKRVAAMKASGVQFVTLLALSDEGAPAYDREHA 312 Query: 241 GQLTRDGTPCFACTPALLPALVEGALKGQDL 271 L G P FACTP L P ++ A++ + L Sbjct: 313 AALAALGAPAFACTPDLFPEVMAAAIEKRPL 343 >ref|NP_628962.1| hypothetical protein SCD63A.16 [Streptomyces coelicolor A3(2)] emb|CAB92668.1| hypothetical protein SCD63A.16 [Streptomyces coelicolor A3(2)] Length = 384 Score = 231 bits (588), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 121/271 (44%), Positives = 178/271 (65%), Gaps = 1/271 (0%) Query: 1 VKPDIQLVGTLLSLKGKIPEKTKDTARMXXXXXXXXXXXXXETDIRRAVTGALNKRQHSP 60 V+ D+ LVGTLLSL +P+ T++TAR T R ++GAL++ + Sbjct: 109 VEADVHLVGTLLSLNEAMPDTTRETARAVVRKVVEDLEKRLVTRTRATLSGALDRSARTA 168 Query: 61 LPSLSGLDWKLTIQRNLKHYNQERRLIIPERFYYFDRARRSKEWTVIVDIDQSGSMASSI 120 P +DW TI NLKHY E R ++PER + RA RS +++ +DQSGSMA+S+ Sbjct: 169 RPRPHDIDWNRTIGANLKHYLPEYRTVVPERLVGYGRASRSVRKDIVLCVDQSGSMAASL 228 Query: 121 IWASVIGSIFASIPALNTRVVVFDTEVVDLTEQCANDPVDMLFGIQLGGGTDIHKSVKYC 180 ++ASV G++ AS+ +++TR+VVFDT V DLT+Q +DPVD+LFG +LGGGTDI++++ YC Sbjct: 229 VYASVFGAVLASMRSIDTRLVVFDTAVADLTDQL-DDPVDVLFGTRLGGGTDINRALAYC 287 Query: 181 EQFIEEPKKTLFIIVSDLYENGNQAGLVRRMRGLRESGVRTMTLLALSDEGKPSYDERLA 240 + I P T+ +++SDLYE G + +++R+ +R +GVR +TLLALSDEG P+YD A Sbjct: 288 QSRITRPADTVVVLISDLYEGGIREEMLKRVAAMRVAGVRFVTLLALSDEGTPAYDREHA 347 Query: 241 GQLTRDGTPCFACTPALLPALVEGALKGQDL 271 L G P FACTP L P ++ A++G+ L Sbjct: 348 AALAALGAPAFACTPDLFPEVMAAAIEGRPL 378 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 388,174,634 Number of extensions: 15262271 Number of successful extensions: 34709 Number of sequences better than 1.0e-05: 19 Number of HSP's gapped: 34674 Number of HSP's successfully gapped: 19 Length of query: 281 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 157 Effective length of database: 420,565,302 Effective search space: 66028752414 Effective search space used: 66028752414 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)