BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0022.p (137 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_470132.1| lin0790 [Listeria innocua] >gi|25516317|pir||AF... 63 2e-09 ref|NP_464324.1| lmo0797 [Listeria monocytogenes EGD-e] >gi|2551... 62 3e-09 ref|ZP_00051497.1| COG1846: Transcriptional regulators [Magnetos... 56 2e-07 ref|NP_102318.1| probable transcription regulator [Mesorhizobium... 56 3e-07 ref|NP_815376.1| transcriptional regulator, MarR family [Enteroc... 56 3e-07 >ref|NP_470132.1| lin0790 [Listeria innocua] pir||AF1531 hypothetical protein lin0790 [imported] - Listeria innocua (strain Clip11262) emb|CAC96022.1| lin0790 [Listeria innocua] Length = 153 Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 2/117 (1%) Query: 3 DREQTIEVYQSFFAVARQLKRLAHQSAANLGLTVHQIGILNFLRQHPGQTQKEVTERLVF 62 D E E+ ++++++ R A Q+AA+LGLT+ Q+ ++N + PG + ++T+RL+ Sbjct: 7 DTENISELLKTYWSIQRISAGYADQNAASLGLTIQQLAMINVIYSTPGISVADLTKRLII 66 Query: 63 NKSRVSLQIDTLALKGLVTR--SVSELDRRETRLYLTEEGETLCLRYNEEAWSHKVL 117 S + +D L GLV + D + L L+++GE L R A+ +K + Sbjct: 67 TGSSAAANVDGLISLGLVVKLNKTIPTDNMDLTLKLSKKGEDLSKRSTANAFMYKAM 123 >ref|NP_464324.1| lmo0797 [Listeria monocytogenes EGD-e] pir||AE1174 hypothetical protein lmo0797 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98875.1| lmo0797 [Listeria monocytogenes] Length = 153 Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 2/117 (1%) Query: 3 DREQTIEVYQSFFAVARQLKRLAHQSAANLGLTVHQIGILNFLRQHPGQTQKEVTERLVF 62 D E E+ ++++++ R A Q+AA+LGLT+ Q+ ++N + PG + ++T+RL+ Sbjct: 7 DTENISELLKTYWSIQRISAGYADQNAASLGLTIQQLAMINVIYSTPGISVADLTKRLII 66 Query: 63 NKSRVSLQIDTLALKGLVTRSVSEL--DRRETRLYLTEEGETLCLRYNEEAWSHKVL 117 S + +D L GLV + + D + L L+++GE L R A+ +K + Sbjct: 67 TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRSTANAFMYKAM 123 >ref|ZP_00051497.1| COG1846: Transcriptional regulators [Magnetospirillum magnetotacticum] Length = 213 Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 51/101 (50%) Query: 6 QTIEVYQSFFAVARQLKRLAHQSAANLGLTVHQIGILNFLRQHPGQTQKEVTERLVFNKS 65 + V+ F ++R++ +LGL++ Q +L+ L + G TQ+E+ RL K Sbjct: 72 DPLRVWFRFIRLSRRVTAAVAAELRDLGLSIPQFDVLSTLSEREGLTQQELAARLYVTKG 131 Query: 66 RVSLQIDTLALKGLVTRSVSELDRRETRLYLTEEGETLCLR 106 VS +D L GLV R DRR L+LT EG+ L R Sbjct: 132 NVSGLVDRLVEAGLVERRAIPGDRRSHALHLTPEGKVLATR 172 >ref|NP_102318.1| probable transcription regulator [Mesorhizobium loti MAFF303099] dbj|BAB48104.1| probable transcription regulator [Mesorhizobium loti] Length = 150 Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 3/98 (3%) Query: 11 YQSFFAVARQ---LKRLAHQSAANLGLTVHQIGILNFLRQHPGQTQKEVTERLVFNKSRV 67 ++++ AVAR L+R A L L Q+ +L L +HPG +Q ++ +L+ +S + Sbjct: 14 FRNWVAVARASHVLERTLAVKLAPLDLKPAQLDVLMNLYRHPGMSQHDLARKLLVGRSNI 73 Query: 68 SLQIDTLALKGLVTRSVSELDRRETRLYLTEEGETLCL 105 ++ + L +GL+ R E D+R RL LTE GE L + Sbjct: 74 TMLLPQLETRGLLRREGDEKDKRILRLALTEAGEALLM 111 >ref|NP_815376.1| transcriptional regulator, MarR family [Enterococcus faecalis V583] gb|AAO81446.1| transcriptional regulator, MarR family [Enterococcus faecalis V583] Length = 142 Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 55/103 (53%) Query: 1 MADREQTIEVYQSFFAVARQLKRLAHQSAANLGLTVHQIGILNFLRQHPGQTQKEVTERL 60 M +++ ++ Y + +L++LA Q L + + +L L QT +++ E++ Sbjct: 1 MNQQQEALKAYIGLLRTSHRLEQLAKQDVTCYDLNITEFSVLELLLHKGPQTIQKIKEKI 60 Query: 61 VFNKSRVSLQIDTLALKGLVTRSVSELDRRETRLYLTEEGETL 103 + S + ID L KG VTR+ SE DRR T + LTE G+TL Sbjct: 61 LIASSSTTYVIDQLHKKGYVTRTPSEKDRRITYVELTEAGKTL 103 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.132 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 154,154,829 Number of extensions: 4796873 Number of successful extensions: 13800 Number of sequences better than 1.0e-05: 9 Number of HSP's gapped: 13830 Number of HSP's successfully gapped: 9 Length of query: 137 Length of database: 757,237,578 Length adjustment: 99 Effective length of query: 38 Effective length of database: 488,442,777 Effective search space: 18560825526 Effective search space used: 18560825526 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 120 (50.8 bits)