BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0580.0012.p (257 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00060978.1| COG1116: ABC-type nitrate/sulfonate/bicarbona... 211 2e-53 ref|NP_769958.1| ABC transporter ATP-binding protein [Bradyrhizo... 209 7e-53 ref|NP_348029.1| ABC transporter, ATPase component [Clostridium ... 205 1e-51 ref|NP_654674.1| ABC_tran, ABC transporter [Bacillus anthracis A... 201 1e-50 ref|NP_830533.1| Hydroxymethylpyrimidine transport ATP-binding p... 194 2e-48 >ref|ZP_00060978.1| COG1116: ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Clostridium thermocellum ATCC 27405] Length = 250 Score = 211 bits (536), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 105/252 (41%), Positives = 161/252 (63%), Gaps = 9/252 (3%) Query: 2 ISMTDLSYSFGTSPE-TPVFSGLSMDVRQGEFISLVGASGCGKSTLFKIIAGLLQQTGGE 60 I + +LS +F + + V + ++++V + +F+SL+G SGCGKST+F+I+AGL + G Sbjct: 5 IKIENLSKTFKVNKKPLEVLNNINIEVYENQFVSLIGPSGCGKSTIFRILAGLEKDFSGN 64 Query: 61 LNIPGTISADPSSRLGRVAYMPQQDLLLPWRTVLDNCLLPWELNRTGSKTEAVRS-IRNM 119 + + G S + G YMPQ+D+L+PWRTV N +LP E+N G K + ++ + N+ Sbjct: 65 ITVNGESIKASSCQFG---YMPQKDVLMPWRTVYKNIILPLEIN--GKKDRSKKTEVENL 119 Query: 120 LERFGLAGTEQRYPHELSGGMRQRTAMLRTLAAGHKLMLLDEPFGALDAITKRGLHRWLL 179 ++ FGL G E YP E+SGGM+QR +LRT +MLLDEPFGALDAIT+ + WLL Sbjct: 120 IKEFGLEGFENFYPGEISGGMKQRAGILRTFLMESDIMLLDEPFGALDAITRINMQEWLL 179 Query: 180 ELXXXXSLEQTVLFITHDLEEALLLSDRIYLMSGGAGGGVQEFPVDLPRPRHYRLNYDPH 239 ++ ++TVLFITHD+EEA+ LSDR+Y++SG ++ ++ PRPR + P Sbjct: 180 KVLVEH--KKTVLFITHDIEEAIFLSDRVYVLSGRPAHVIKTLDIEFPRPRDREVLSSPK 237 Query: 240 FVALRADLERRL 251 F+ + L + L Sbjct: 238 FLEYKDALLKAL 249 >ref|NP_769958.1| ABC transporter ATP-binding protein [Bradyrhizobium japonicum] dbj|BAC48583.1| ABC transporter ATP-binding protein [Bradyrhizobium japonicum USDA 110] Length = 287 Score = 209 bits (531), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 113/248 (45%), Positives = 157/248 (63%), Gaps = 8/248 (3%) Query: 1 MISMTDLSYSFGTSPETPVFSGLSMDVRQGEFISLVGASGCGKSTLFKIIAGLLQ-QTGG 59 ++ + + +FG+ SGL V GEF+++VG SGCGKSTLF I+AGL + GG Sbjct: 25 LLELRAIDKTFGS---VAALSGLQASVAPGEFVTVVGPSGCGKSTLFNIVAGLEEPDAGG 81 Query: 60 ELNIPGTISADPSSRLGRVAYMPQQDLLLPWRTVLDNCLLPWELNRTGSKTEAVRSIRNM 119 L G S + LGRV++MPQ+DLL PWR V+DN +L E+ + ++++ M Sbjct: 82 ILRFEGK-SCHAADLLGRVSFMPQRDLLFPWRNVVDNAILALEVEGMPREQARAKALK-M 139 Query: 120 LERFGLAGTEQRYPHELSGGMRQRTAMLRTLAAGHKLMLLDEPFGALDAITKRGLHRWLL 179 L FGLAG E++YP++LSGGMRQR A++RT LMLLDEPFGALDA+T+ + RWLL Sbjct: 140 LPEFGLAGFEKQYPNQLSGGMRQRVALMRTFLFERDLMLLDEPFGALDALTRAMMQRWLL 199 Query: 180 ELXXXXSLEQTVLFITHDLEEALLLSDRIYLMSGGAGGGVQEFPVDLPRPRHYRLNYDPH 239 ++ +T+LFITHD++EA+ L DR+ +M+ G E VDLPRPR + P Sbjct: 200 DV--WQKYRRTILFITHDVDEAIFLGDRVLVMTARPGSVKLEQVVDLPRPRRPEIVTSPE 257 Query: 240 FVALRADL 247 FV L+ L Sbjct: 258 FVRLKRTL 265 >ref|NP_348029.1| ABC transporter, ATPase component [Clostridium acetobutylicum] pir||F97072 ABC transporter, ATPase component CAC1401 [imported] - Clostridium acetobutylicum gb|AAK79369.1| ABC transporter, ATPase component [Clostridium acetobutylicum] Length = 252 Score = 205 bits (521), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 104/229 (45%), Positives = 150/229 (65%), Gaps = 23/229 (10%) Query: 1 MISMTDLSYSFGTSPETPVFSGLSMDVRQGEFISLVGASGCGKSTLFKIIAGLLQQTGGE 60 +I + +++ SF E V +S++V+ GEF+S++G SGCGKSTLF II L GE Sbjct: 19 VIDIKNVTKSF---DEETVLKDVSLNVKSGEFVSILGPSGCGKSTLFNIITALTDADSGE 75 Query: 61 LNIPGTISADPSSRLGRVAYMPQQDLLLPWRTVLDNCLLPWEL---NRTGSKTEAVRSIR 117 + + G I YM Q+DLLLPW+TV+DN +LP +L N+ S++EA + I Sbjct: 76 VKVSGDI-----------GYMQQKDLLLPWKTVIDNVVLPLDLKGKNKKESRSEAKKYIE 124 Query: 118 NMLERFGLAGTEQRYPHELSGGMRQRTAMLRTLAAGHKLMLLDEPFGALDAITKRGLHRW 177 M GL G E +YP+ELSGGM+QR + LRT + ++MLLDEPFGALD+ITK + +W Sbjct: 125 IM----GLKGYENKYPYELSGGMKQRASFLRTFLSSSEIMLLDEPFGALDSITKGNMQKW 180 Query: 178 LLELXXXXSLEQTVLFITHDLEEALLLSDRIYLMSGGAGGGVQEFPVDL 226 +L++ L++T+LFITHD+EEA+LLSDRIY++ G +EF ++ Sbjct: 181 ILQMKDV--LKRTILFITHDIEEAILLSDRIYVLGSRPGVVKKEFNIEF 227 >ref|NP_654674.1| ABC_tran, ABC transporter [Bacillus anthracis A2012] ref|NP_843251.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP24737.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 249 Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 101/232 (43%), Positives = 148/232 (63%), Gaps = 10/232 (4%) Query: 16 ETPVFSGLSMDVRQGEFISLVGASGCGKSTLFKIIAGLLQQTGGELNIPGTISADPSSRL 75 E P+ + L+ ++ EF+S++G SGCGKSTLF++I GL + + G++ + T S Sbjct: 18 EKPIINELNASIQDKEFVSIIGPSGCGKSTLFRLITGLEEASTGQIELTETKSHP----- 72 Query: 76 GRVAYMPQQDLLLPWRTVLDNCLLPWELNRTGSKTEAVRSIRNMLERFGLAGTEQRYPHE 135 V YMPQ+D+LLPWRT+++N LP E K +++ + +L++FGL G E +YP + Sbjct: 73 --VGYMPQKDMLLPWRTIIENAALPLECQGVQKKEAQIKA-KELLQKFGLQGYETKYPKD 129 Query: 136 LSGGMRQRTAMLRTLAAGHKLMLLDEPFGALDAITKRGLHRWLLELXXXXSLEQTVLFIT 195 LSGGMRQR + +RTL G +++LLDEPF ALDA+TK L WL E E+T+LFIT Sbjct: 130 LSGGMRQRVSFIRTLLTGGEILLLDEPFSALDALTKASLQEWLFE--QWKEWEKTILFIT 187 Query: 196 HDLEEALLLSDRIYLMSGGAGGGVQEFPVDLPRPRHYRLNYDPHFVALRADL 247 HD+EEAL LS+RI+++ + E V L R R + Y P +AL+ +L Sbjct: 188 HDVEEALFLSNRIFVVENQPITTLTERIVPLDRNRTRKDLYKPEVLALKDEL 239 >ref|NP_830533.1| Hydroxymethylpyrimidine transport ATP-binding protein [Bacillus cereus ATCC 14579] gb|AAP07734.1| Hydroxymethylpyrimidine transport ATP-binding protein [Bacillus cereus ATCC 14579] Length = 249 Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 100/247 (40%), Positives = 152/247 (61%), Gaps = 13/247 (5%) Query: 1 MISMTDLSYSFGTSPETPVFSGLSMDVRQGEFISLVGASGCGKSTLFKIIAGLLQQTGGE 60 ++ ++S+ + E P+ L+ + + EF+S++G SGCGKSTLF++I GL + + G+ Sbjct: 6 ILQFHNVSFHYD---EKPIIHELNASIHEKEFVSIIGPSGCGKSTLFRLITGLEKVSTGQ 62 Query: 61 LNIPGTISADPSSRLGRVAYMPQQDLLLPWRTVLDNCLLPWELNRTGSKTEAVRSIRNML 120 + + T + V YMPQ+D+LLPWRT+++N LP E K V++ + +L Sbjct: 63 IELTETKNHP-------VGYMPQKDMLLPWRTIIENAALPLECQGVQKKEAEVKA-KELL 114 Query: 121 ERFGLAGTEQRYPHELSGGMRQRTAMLRTLAAGHKLMLLDEPFGALDAITKRGLHRWLLE 180 +FGL G E++YP +LSGGMRQR + +RTL G +++LLDEPF ALDA+TK L WL E Sbjct: 115 HKFGLQGYEKKYPKDLSGGMRQRVSFIRTLLTGGEILLLDEPFSALDALTKTSLQEWLFE 174 Query: 181 LXXXXSLEQTVLFITHDLEEALLLSDRIYLMSGGAGGGVQEFPVDLPRPRHYRLNYDPHF 240 E+T+LFITHD+EEAL LS+R+ ++ + E V L R + Y P Sbjct: 175 --QWQEWEKTILFITHDVEEALFLSNRVLVVEQQPITTLTERTVPLDHNRTRKDLYKPEV 232 Query: 241 VALRADL 247 +AL+ +L Sbjct: 233 LALKDEL 239 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.139 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 374,778,596 Number of extensions: 14861977 Number of successful extensions: 107845 Number of sequences better than 1.0e-05: 17797 Number of HSP's gapped: 85959 Number of HSP's successfully gapped: 18921 Length of query: 257 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 134 Effective length of database: 423,280,401 Effective search space: 56719573734 Effective search space used: 56719573734 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 124 (52.4 bits)